pycom05g09870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011131
Physical Location & Seq
Reverse (-)
13141241 .. 13143975
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09870.1

Sequence Viewer

Length: 1191 bp
ATGATCGTTATCAAATCCTCGCCTGACCCGCTTAACATTTTGATCGTGCGGTCAAAATCACATCTCTCTCGAACAATACACCACACAAACCCCACAAACAGAAACGGAAAAACCCTAGCTACCAATCTGCCCCACTGTTCCAGTGACCCAGAGTGCCCCCCCTCCCCCCCCTCTCTCTCGACTGGTGGCAGTACCGGCTCTATGTCGCGACGAGACAGTCGGGATTCCGACTCCAGACGACACCGTTCCAGGTTTGACAGAGAACCCAGTCCCAAGAGGTCCCGGAGGGGTGAGAAAGATGAAAAAGACAGAATCGCCAGCAAAGGTAATTTAGAAAGTGCGAAGCAGAGTGACCAGGATCAGAAGCACCGCCTGAGGCTGCAAGATACATTGCCACTTGAATCTACATTAGCACCCGACTCAAAGGTGGAAAATGGGGATTCCAGAAAAGAATCCGATAAGAAACCCAGTGGACATCATGAAGGAACCAAGCACTCCACTAATCCATCTGAAATACCCCGGTCTCAATCTTATTTTCAGCAGCATGATGAGCGTGGTAATGCTGGGCAAGTTGTTCGAAGCTCTGGTCGTGGTTCAACTGCTGAGCGTGGATCGTGGAGGGATCCAAAGGATAGGCATGATGATAGGACAGTGAGCAAGACAACAACTAATGATTCAAGGTCAAGAAATGAGAAAGCTAAGGGGGGTGAAAACAGGAACTGGCGCCATGATGGGTTCTTTGAAATGGAGGCTGATCCACCATCGGCAAGGAAAAGACCTGCATTCAGGGAGAAGAAGATTCCTGTCGAGTCTGATAATGCTGACAAGACAGCAGCAGAGACTGCAAAGTCAAGCCATCCTGACCCTTCCATGGAAGGAAGCAGAAAAAAGGAGGAAAGAGGGCACAACCCACGCCACACGGATAGATCTGAGAAGCAATTTGCAGGAGAGAGGGGGTCTTACCGAAGAGATGCACCACCGGGTGTCTTTCCTTCGAGAGAGAGGTACACTGGTGGTGCTGGCCGGAACAACAGAGGAAGAGATAGATTCAGTGTGAGACAAGGGTATAATTCTAGTATGGGTCGTGCTGAGAAATGGACGCATGATTTGTATAACGAGGCTAATAGGAGTCCAACGCCGAAAAATGAAGAGGATCAAATTGCAAAGGTGGAAGCACTTTTGGCTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

397

Amino Acids

44.56

Weight (kDa)

9.89

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 216, 847
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 723
AccII CGCG 1 cut(s) 208
AciI CCGC 3 cut(s) 29, 49, 370
AclWI GGATC 6 cut(s) 366, 617, 619, 630, 749, 1161
AcoI YGGCCR 1 cut(s) 1021
AcyI GRCGYC 1 cut(s) 724
AdeI CACNNNGTG 1 cut(s) 983
AfaI GTAC 2 cut(s) 193, 1007
AfiI CCNNNNNNNGG 1 cut(s) 871
AgsI TTSAA 4 cut(s) 401, 597, 678, 743
AjnI CCWGG 2 cut(s) 248, 354
AluBI AGCT 3 cut(s) 119, 582, 698
AluI AGCT 3 cut(s) 119, 582, 698
Alw26I GTCTC 4 cut(s) 207, 528, 833, 1051
AlwI GGATC 6 cut(s) 366, 617, 619, 630, 749, 1161
AlwNI CAGNNNCTG 2 cut(s) 720, 842
AoxI GGCC 1 cut(s) 1021
ApeKI GCWGC 3 cut(s) 379, 541, 833
ArsI GACNNNNNNTTYG 4 cut(s) 571, 603, 1090, 1122
AspLEI GCGC 1 cut(s) 726
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 3 cut(s) 283, 520, 981
AsuHPI GGTGA 2 cut(s) 302, 719
AsuII TTCGAA 1 cut(s) 577
AvaII GGWCC 1 cut(s) 279
AxyI CCTNAGG 1 cut(s) 374
BaeGI GKGCMC 2 cut(s) 158, 906
BaeI ACNNNNGTAYC 2 cut(s) 997, 1030
BamHI GGATCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 723
BbvI GCAGC 3 cut(s) 366, 553, 845
BccI CCATC 4 cut(s) 514, 725, 769, 864
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BciT130I CCWGG 2 cut(s) 250, 356
BcnI CCSGG 3 cut(s) 283, 520, 981
BcoDI GTCTC 4 cut(s) 207, 528, 833, 1051
BfaI CTAG 2 cut(s) 116, 1074
BfoI RGCGCY 1 cut(s) 727
BfuAI ACCTGC 1 cut(s) 787
BglII AGATCT 1 cut(s) 926
BisI GCNGC 3 cut(s) 380, 542, 834
BlpI GCTNAGC 1 cut(s) 603
BlsI GCNGC 3 cut(s) 381, 543, 835
Bme1390I CCNGG 5 cut(s) 250, 283, 356, 520, 981
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 4 cut(s) 281, 487, 624, 725
BmrFI CCNGG 5 cut(s) 250, 283, 356, 520, 981
BmrI ACTGGG 2 cut(s) 261, 462
BmsI GCATC 1 cut(s) 961
BmuI ACTGGG 2 cut(s) 261, 462
BpmI CTGGAG 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 603
Bpu14I TTCGAA 1 cut(s) 577
BpuMI CCSGG 3 cut(s) 283, 520, 981
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 724
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 518, 870
Bsc4I CCNNNNNNNGG 1 cut(s) 871
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 6 cut(s) 141, 187, 267, 468, 725, 1015
Bse21I CCTNAGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 389
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 250, 356
BseDI CCNNGG 2 cut(s) 518, 870
BseGI GGATG 1 cut(s) 856
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 871
BseMI GCAATG 1 cut(s) 389
BseMII CTCAG 4 cut(s) 365, 594, 921, 1080
BseNI ACTGG 6 cut(s) 141, 187, 267, 468, 725, 1015
BseSI GKGCMC 2 cut(s) 158, 906
BseXI GCAGC 3 cut(s) 366, 553, 845
BseYI CCCAGC 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 1023
BshNI GGYRCC 1 cut(s) 723
BsiSI CCGG 5 cut(s) 195, 283, 520, 980, 1024
BslFI GGGAC 2 cut(s) 255, 265
BslI CCNNNNNNNGG 1 cut(s) 871
BsmAI GTCTC 4 cut(s) 207, 528, 833, 1051
BsmFI GGGAC 2 cut(s) 255, 265
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 1 cut(s) 1023
Bso31I GGTCTC 1 cut(s) 528
Bsp119I TTCGAA 1 cut(s) 577
Bsp1286I GDGCHC 2 cut(s) 158, 906
Bsp143I GATC 8 cut(s) 3, 42, 358, 611, 622, 754, 926, 1153
Bsp1720I GCTNAGC 1 cut(s) 603
Bsp19I CCATGG 1 cut(s) 870
Bsp68I TCGCGA 1 cut(s) 208
BspACI CCGC 3 cut(s) 29, 49, 370
BspANI GGCC 1 cut(s) 1023
BspCNI CTCAG 4 cut(s) 366, 595, 922, 1081
BspFNI CGCG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 4 cut(s) 281, 487, 624, 725
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 6 cut(s) 366, 617, 619, 630, 749, 1161
BspT104I TTCGAA 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 723
BspTNI GGTCTC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 6 cut(s) 141, 187, 267, 468, 725, 1015
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 518, 870
BssMI GATC 8 cut(s) 3, 42, 358, 611, 622, 754, 926, 1153
BssNI GRCGYC 1 cut(s) 724
BssT1I CCWWGG 1 cut(s) 870
Bst2UI CCWGG 2 cut(s) 250, 356
Bst4CI ACNGT 4 cut(s) 137, 218, 245, 652
Bst6I CTCTTC 3 cut(s) 961, 1033, 1143
BstACI GRCGYC 1 cut(s) 724
BstAPI GCANNNNNTGC 1 cut(s) 842
BstBI TTCGAA 1 cut(s) 577
BstC8I GCNNGC 2 cut(s) 319, 1021
BstDEI CTNAG 5 cut(s) 374, 603, 699, 930, 1089
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 1 cut(s) 856
BstFNI CGCG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 727
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 8 cut(s) 6, 45, 361, 614, 625, 757, 929, 1156
BstMAI GTCTC 4 cut(s) 207, 528, 833, 1051
BstMBI GATC 8 cut(s) 3, 42, 358, 611, 622, 754, 926, 1153
BstMWI GCNNNNNNNGC 5 cut(s) 28, 195, 550, 842, 1181
BstNI CCWGG 2 cut(s) 250, 356
BstSCI CCNGG 5 cut(s) 248, 281, 354, 518, 979
BstSLI GKGCMC 2 cut(s) 158, 906
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 3 cut(s) 366, 553, 845
BstX2I RGATCY 2 cut(s) 622, 926
BstYI RGATCY 2 cut(s) 622, 926
Bsu36I CCTNAGG 1 cut(s) 374
BsuRI GGCC 1 cut(s) 1023
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 1 cut(s) 856
BtsIMutI CAGTG 6 cut(s) 133, 148, 475, 657, 1008, 1057
BtuMI TCGCGA 1 cut(s) 208
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 2 cut(s) 319, 1021
CaiI CAGNNNCTG 2 cut(s) 720, 842
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 726
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 1 cut(s) 1108
Csp6I GTAC 2 cut(s) 192, 1006
CviAII CATG 6 cut(s) 479, 545, 638, 728, 871, 1103
CviQI GTAC 2 cut(s) 192, 1006
DdeI CTNAG 5 cut(s) 374, 603, 699, 930, 1089
DinI GGCGCC 1 cut(s) 725
DpnI GATC 8 cut(s) 5, 44, 360, 613, 624, 756, 928, 1155
DpnII GATC 8 cut(s) 3, 42, 358, 611, 622, 754, 926, 1153
DraIII CACNNNGTG 1 cut(s) 983
DrdI GACNNNNNNGTC 2 cut(s) 216, 847
DseDI GACNNNNNNGTC 2 cut(s) 216, 847
EaeI YGGCCR 1 cut(s) 1021
Eam1104I CTCTTC 3 cut(s) 961, 1033, 1143
EarI CTCTTC 3 cut(s) 961, 1033, 1143
Eco130I CCWWGG 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 248, 354
EcoT14I CCWWGG 1 cut(s) 870
EgeI GGCGCC 1 cut(s) 725
EheI GGCGCC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 870
FaeI CATG 6 cut(s) 482, 548, 641, 731, 874, 1106
FaqI GGGAC 2 cut(s) 255, 265
FatI CATG 6 cut(s) 478, 544, 637, 727, 870, 1102
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 380, 542, 834
FokI GGATG 1 cut(s) 843
Fsp4HI GCNGC 3 cut(s) 380, 542, 834
FspBI CTAG 2 cut(s) 116, 1074
GlaI GCGC 1 cut(s) 725
GluI GCNGC 3 cut(s) 380, 542, 834
GsaI CCCAGC 1 cut(s) 567
GsuI CTGGAG 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 727
HaeIII GGCC 1 cut(s) 1023
HapII CCGG 5 cut(s) 195, 283, 520, 980, 1024
HgaI GACGC 1 cut(s) 1108
HhaI GCGC 1 cut(s) 726
Hin1I GRCGYC 1 cut(s) 724
Hin1II CATG 6 cut(s) 482, 548, 641, 731, 874, 1106
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HpaII CCGG 5 cut(s) 195, 283, 520, 980, 1024
HphI GGTGA 2 cut(s) 302, 719
Hpy166II GTNNAC 2 cut(s) 473, 1008
Hpy188I TCNGA 6 cut(s) 229, 363, 457, 511, 814, 931
Hpy8I GTNNAC 2 cut(s) 473, 1008
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 4 cut(s) 476, 869, 876, 1002
HpyCH4III ACNGT 4 cut(s) 137, 218, 245, 652
HpyCH4V TGCA 6 cut(s) 382, 782, 845, 944, 974, 1163
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 195, 550, 842, 1181
HpyF3I CTNAG 5 cut(s) 374, 603, 699, 930, 1089
Hsp92I GRCGYC 1 cut(s) 724
Hsp92II CATG 6 cut(s) 482, 548, 641, 731, 874, 1106
HspAI GCGC 1 cut(s) 724
KasI GGCGCC 1 cut(s) 723
Kzo9I GATC 8 cut(s) 3, 42, 358, 611, 622, 754, 926, 1153
Lsp1109I GCAGC 3 cut(s) 366, 553, 845
LweI GCATC 1 cut(s) 961
MaeI CTAG 2 cut(s) 116, 1074
MaeIII GTNAC 2 cut(s) 143, 350
MalI GATC 8 cut(s) 5, 44, 360, 613, 624, 756, 928, 1155
MboI GATC 8 cut(s) 3, 42, 358, 611, 622, 754, 926, 1153
MboII GAAGA 5 cut(s) 805, 808, 978, 1050, 1160
MflI RGATCY 2 cut(s) 622, 926
MhlI GDGCHC 2 cut(s) 158, 906
MluCI AATT 4 cut(s) 328, 938, 1069, 1158
Mly113I GGCGCC 1 cut(s) 724
MlyI GAGTC 4 cut(s) 224, 413, 818, 1138
MmeI TCCRAC 2 cut(s) 252, 1157
MseI TTAA 1 cut(s) 33
MspI CCGG 5 cut(s) 195, 283, 520, 980, 1024
MspR9I CCNGG 5 cut(s) 250, 283, 356, 520, 981
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 2 cut(s) 250, 356
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 5 cut(s) 28, 195, 550, 842, 1181
NarI GGCGCC 1 cut(s) 724
NciI CCSGG 3 cut(s) 283, 520, 981
NcoI CCATGG 1 cut(s) 870
NdeII GATC 8 cut(s) 3, 42, 358, 611, 622, 754, 926, 1153
NlaIII CATG 6 cut(s) 482, 548, 641, 731, 874, 1106
NlaIV GGNNCC 4 cut(s) 281, 487, 624, 725
NmuCI GTSAC 2 cut(s) 143, 350
NruI TCGCGA 1 cut(s) 208
NspV TTCGAA 1 cut(s) 577
PagI TCATGA 1 cut(s) 478
PctI GAATGC 1 cut(s) 782
PfeI GAWTC 8 cut(s) 224, 312, 401, 440, 452, 674, 799, 1047
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 3 cut(s) 381, 543, 835
PleI GAGTC 4 cut(s) 224, 413, 817, 1137
PluTI GGCGCC 1 cut(s) 727
PpsI GAGTC 4 cut(s) 224, 413, 817, 1137
PpuMI RGGWCCY 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 2 cut(s) 248, 354
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 2 cut(s) 248, 354
PspN4I GGNNCC 4 cut(s) 281, 487, 624, 725
PspPI GGNCC 1 cut(s) 279
PspPPI RGGWCCY 1 cut(s) 279
PstNI CAGNNNCTG 2 cut(s) 720, 842
PsuI RGATCY 2 cut(s) 622, 926
RruI TCGCGA 1 cut(s) 208
RsaI GTAC 2 cut(s) 193, 1007
RsaNI GTAC 2 cut(s) 192, 1006
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 3 cut(s) 380, 542, 834
Sau3AI GATC 8 cut(s) 3, 42, 358, 611, 622, 754, 926, 1153
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 4 cut(s) 224, 413, 818, 1138
ScrFI CCNGG 5 cut(s) 250, 283, 356, 520, 981
SduI GDGCHC 2 cut(s) 158, 906
SfaNI GCATC 1 cut(s) 961
SfoI GGCGCC 1 cut(s) 725
SfuI TTCGAA 1 cut(s) 577
SinI GGWCC 1 cut(s) 279
Sse9I AATT 4 cut(s) 328, 938, 1069, 1158
SsiI CCGC 3 cut(s) 29, 49, 370
SspDI GGCGCC 1 cut(s) 723
SspMI CTAG 2 cut(s) 116, 1074
StyD4I CCNGG 5 cut(s) 248, 281, 354, 518, 979
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 4 cut(s) 137, 218, 245, 652
TaqI TCGA 5 cut(s) 70, 179, 577, 807, 995
TasI AATT 4 cut(s) 328, 938, 1069, 1158
TfiI GAWTC 8 cut(s) 224, 312, 401, 440, 452, 674, 799, 1047
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 6 cut(s) 140, 148, 475, 657, 1015, 1057
TseFI GTSAC 2 cut(s) 143, 350
TseI GCWGC 3 cut(s) 379, 541, 833
Tsp45I GTSAC 2 cut(s) 143, 350
TspDTI ATGAA 3 cut(s) 315, 495, 1161
TspGWI ACGGA 2 cut(s) 120, 935
TspRI CASTG 6 cut(s) 140, 148, 475, 657, 1015, 1057
VpaK11BI GGWCC 1 cut(s) 279
XspI CTAG 2 cut(s) 116, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.