Rmu_co8218150.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8218150.1
OG0011131
Physical Location & Seq
Forward (+)
1 .. 731
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8218150.1_g000001.1.cds

Sequence Viewer

Length: 343 bp
tgccaagaggtataggagggatgagcaagacaacaaagatagagtcttcgagaagagtaatttggagggtgcaaagaagactgaccaggaggaccaggatcaaaagcagcgccgcaggctgcaagatgcattgccgctcgagtccccattaggatctgatgccaaggtggaaagtggggctcccaggaaggagtctgatacaaaacccagtggacatcaagagctaaccaaaaactcctctgatgcaactgaagcaccccggtctcgatcttattttcaggtgctggatatatttatgaatctcttcaacttattagcctttgtctgcagaatgtgtaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

113

Amino Acids

13.06

Weight (kDa)

8.63

Isoelectric Point (pI)

66.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 137
AciI CCGC 2 cut(s) 113, 135
AclWI GGATC 2 cut(s) 106, 161
AcuI CTGAAG 1 cut(s) 271
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 3 cut(s) 85, 94, 183
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 2 cut(s) 106, 161
AlwNI CAGNNNCTG 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 107, 119
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 38, 84
BbvI GCAGC 2 cut(s) 106, 119
BciT130I CCWGG 3 cut(s) 87, 96, 185
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 4 cut(s) 108, 113, 120, 135
BlsI GCNGC 4 cut(s) 109, 114, 121, 136
Bme1390I CCNGG 4 cut(s) 87, 96, 185, 260
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 4 cut(s) 87, 96, 185, 260
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 3 cut(s) 116, 149, 233
BmuI ACTGGG 1 cut(s) 202
BpiI GAAGAC 2 cut(s) 38, 84
BpuMI CCSGG 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 3 cut(s) 163, 183, 258
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 3 cut(s) 87, 96, 185
BseDI CCNNGG 3 cut(s) 163, 183, 258
BseGI GGATG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 106, 119
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 98, 153, 267
BspACI CCGC 2 cut(s) 113, 135
BspLI GGNNCC 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 330
BspPI GGATC 2 cut(s) 106, 161
BspTNI GGTCTC 1 cut(s) 268
BsrBI CCGCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 163, 183, 258
BssMI GATC 3 cut(s) 98, 153, 267
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 3 cut(s) 87, 96, 185
Bst6I CTCTTC 2 cut(s) 48, 309
BstC8I GCNNGC 1 cut(s) 117
BstF5I GGATG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 101, 156, 270
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 3 cut(s) 98, 153, 267
BstMWI GCNNNNNNNGC 2 cut(s) 116, 252
BstNI CCWGG 3 cut(s) 87, 96, 185
BstSCI CCNGG 4 cut(s) 85, 94, 183, 258
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 106, 119
BstV2I GAAGAC 2 cut(s) 38, 84
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 92
CviJI RGCY 4 cut(s) 119, 180, 224, 318
CviKI_1 RGCY 4 cut(s) 119, 180, 224, 318
DpnI GATC 3 cut(s) 100, 155, 269
DpnII GATC 3 cut(s) 98, 153, 267
Eam1104I CTCTTC 2 cut(s) 48, 309
EarI CTCTTC 2 cut(s) 48, 309
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 85, 94, 183
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 163
FaiI YATR 3 cut(s) 13, 291, 297
FaqI GGGAC 1 cut(s) 128
Fnu4HI GCNGC 4 cut(s) 108, 113, 120, 135
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 4 cut(s) 108, 113, 120, 135
GlaI GCGC 1 cut(s) 111
GluI GCNGC 4 cut(s) 108, 113, 120, 135
HaeII RGCGCY 1 cut(s) 113
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 4 cut(s) 43, 141, 192, 299
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 3 cut(s) 158, 197, 242
Hpy188III TCNNGA 3 cut(s) 50, 219, 265
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 1 cut(s) 182
HpyCH4V TGCA 5 cut(s) 72, 122, 129, 246, 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 252
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 3 cut(s) 98, 153, 267
LmnI GCTCC 1 cut(s) 185
Lsp1109I GCAGC 2 cut(s) 106, 119
LweI GCATC 3 cut(s) 116, 149, 233
MalI GATC 3 cut(s) 100, 155, 269
MbiI CCGCTC 1 cut(s) 137
MboI GATC 3 cut(s) 98, 153, 267
MboII GAAGA 4 cut(s) 38, 65, 89, 296
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 1 cut(s) 59
MlyI GAGTC 3 cut(s) 52, 150, 201
MnlI CCTC 4 cut(s) 10, 59, 83, 248
Mph1103I ATGCAT 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 303
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 4 cut(s) 87, 96, 185, 260
MvaI CCWGG 3 cut(s) 87, 96, 185
MwoI GCNNNNNNNGC 2 cut(s) 116, 252
NciI CCSGG 1 cut(s) 260
NdeII GATC 3 cut(s) 98, 153, 267
NlaIV GGNNCC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 4 cut(s) 109, 114, 121, 136
PleI GAGTC 3 cut(s) 51, 149, 200
PpsI GAGTC 3 cut(s) 51, 149, 200
Psp6I CCWGG 3 cut(s) 85, 94, 183
PspGI CCWGG 3 cut(s) 85, 94, 183
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 92
PspXI VCTCGAGB 1 cut(s) 138
PstI CTGCAG 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 153
SatI GCNGC 4 cut(s) 108, 113, 120, 135
Sau3AI GATC 3 cut(s) 98, 153, 267
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 3 cut(s) 52, 150, 201
ScrFI CCNGG 4 cut(s) 87, 96, 185, 260
SduI GDGCHC 1 cut(s) 182
SetI ASST 5 cut(s) 12, 169, 226, 283, 342
SfaNI GCATC 3 cut(s) 116, 149, 233
SfcI CTRYAG 1 cut(s) 326
Sfr274I CTCGAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 1 cut(s) 59
SsiI CCGC 2 cut(s) 113, 135
StyD4I CCNGG 4 cut(s) 85, 94, 183, 258
StyI CCWWGG 1 cut(s) 163
TaqI TCGA 3 cut(s) 49, 139, 266
TasI AATT 1 cut(s) 59
TauI GCSGC 2 cut(s) 115, 137
TfiI GAWTC 1 cut(s) 299
TscAI CASTG 1 cut(s) 215
TseI GCWGC 2 cut(s) 107, 119
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.