Rh6AG062100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011131
Physical Location & Seq
Reverse (-)
9167046 .. 9169922
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG062100.1

Sequence Viewer

Length: 447 bp
ATGGAGGCTGATCTACCAGCTGCAAGGAAAAGACCCGCTTTCAGGGAGAAGAAAGTTCCACTGGAGTCTGAAAATACTGAAAAAACAGCAGTAGAGACTGCAAAGTCAAGTCATCCTGACCGTTCGATGGAAGGAAGTAGAAAGGAGGAAAGAGGTGACAACCGACGCCACTTTGATAGATCTGAGAAGCAATTTGGAGGAGACAGGGTGCGTTACAAGGGAGATGCGCAGAGAGGTGCCTTTCCTTCGAGAGAAAGGTACACCAATGGTGGTGCTGGCCGCAACTATAGAGGAAGAGATAGATTTGGTGAGAGGCAAGGGTATCATTCTACTGGTGGTCGTGTTGAGAAATGGGGACATGATTTATATCATGAGGCTAATAGGAGTCCAACACCAAAAAATGAAGAGGATCAAATTGCAAAGGTAGAAGCACTTTTGGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

148

Amino Acids

16.93

Weight (kDa)

9.65

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
Acc16I TGCGCA 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 236
AciI CCGC 2 cut(s) 36, 280
AclWI GGATC 1 cut(s) 417
AcoI YGGCCR 1 cut(s) 277
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 42, 127
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 89, 195
AlwI GGATC 1 cut(s) 417
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 167, 320
BanI GGYRCC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 89, 195
BfmI CTRYAG 1 cut(s) 286
BglII AGATCT 1 cut(s) 179
BisI GCNGC 2 cut(s) 21, 280
BlsI GCNGC 2 cut(s) 22, 281
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 127
Bse1I ACTGG 2 cut(s) 66, 337
Bse8I GATNNNNATC 1 cut(s) 366
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 42, 127
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 66, 337
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 236
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 2 cut(s) 42, 127
BsmAI GTCTC 2 cut(s) 89, 195
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 10, 179, 409
BspACI CCGC 2 cut(s) 36, 280
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 2 cut(s) 66, 337
BssMI GATC 3 cut(s) 10, 179, 409
BssNI GRCGYC 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 2 cut(s) 289, 399
BstACI GRCGYC 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 3 cut(s) 13, 182, 412
BstMAI GTCTC 2 cut(s) 89, 195
BstMBI GATC 3 cut(s) 10, 179, 409
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 277
CciI TCATGA 1 cut(s) 370
CfoI GCGC 1 cut(s) 229
CseI GACGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 359, 371
CviJI RGCY 5 cut(s) 8, 20, 279, 377, 440
CviKI_1 RGCY 5 cut(s) 8, 20, 279, 377, 440
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 12, 181, 411
DpnII GATC 3 cut(s) 10, 179, 409
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 289, 399
EarI CTCTTC 2 cut(s) 289, 399
FaeI CATG 2 cut(s) 362, 374
FaiI YATR 5 cut(s) 288, 360, 367, 372, 445
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 1 cut(s) 369
FatI CATG 2 cut(s) 358, 370
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 21, 280
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 21, 280
FspI TGCGCA 1 cut(s) 228
GlaI GCGC 1 cut(s) 228
GluI GCNGC 2 cut(s) 21, 280
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 1 cut(s) 279
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 2 cut(s) 362, 374
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 2 cut(s) 65, 385
HphI GGTGA 2 cut(s) 167, 320
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 2 cut(s) 70, 184
Hpy188III TCNNGA 3 cut(s) 116, 249, 371
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 125, 255
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 23, 101, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 2 cut(s) 362, 374
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 3 cut(s) 10, 179, 409
LpnPI CCDG 7 cut(s) 28, 30, 47, 129, 190, 261, 318
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 214
MaeIII GTNAC 2 cut(s) 155, 212
MalI GATC 3 cut(s) 12, 181, 411
MboI GATC 3 cut(s) 10, 179, 409
MboII GAAGA 3 cut(s) 61, 306, 416
MflI RGATCY 1 cut(s) 179
MluCI AATT 2 cut(s) 191, 414
MlyI GAGTC 2 cut(s) 74, 394
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 8 cut(s) 139, 146, 191, 227, 284, 306, 367, 400
MspA1I CMGCKG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 437
NdeII GATC 3 cut(s) 10, 179, 409
NlaIII CATG 2 cut(s) 362, 374
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 155
NsbI TGCGCA 1 cut(s) 228
PagI TCATGA 1 cut(s) 370
PkrI GCNGC 2 cut(s) 22, 281
PleI GAGTC 2 cut(s) 73, 393
PpsI GAGTC 2 cut(s) 73, 393
PspN4I GGNNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 2 cut(s) 21, 280
Sau3AI GATC 3 cut(s) 10, 179, 409
SchI GAGTC 2 cut(s) 74, 394
SetI ASST 5 cut(s) 22, 157, 238, 260, 426
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 286
Sse9I AATT 2 cut(s) 191, 414
SsiI CCGC 2 cut(s) 36, 280
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 125, 248
TasI AATT 2 cut(s) 191, 414
TauI GCSGC 1 cut(s) 282
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 417, 432
TspRI CASTG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.