FvH4_2g04340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011131
Physical Location & Seq
Reverse (-)
3365401 .. 3368270
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04340.t2

Sequence Viewer

Length: 981 bp
ATGTCCCGACGCGATTCTGATTCCAGACGACACCGTTCCAAGTTCGACAGGGAACCCAGTCCCAAGAGGTCTAGGAGGGATGAGAAAGACAGAGTCCTTGAAAAGAGTAATGTGGAGGGTGCAAAGAAGACTTACCAGGATGTCCAGGAACAAAAGCAGCGGCGCAGGCTTCAAGATGCATTGCCACTCGAGTCCCCATTACGATCCAATGCCAAGGTGGAAAGTGGGGCTCCCTGGAAGGAGTCAGATGCGAAACCCAGTGGACATCAAGAACTAACCAAAAACTCTTCTGATGCAAATGAAGTTCCCTGGTCTCGATCATATTTTCAGCAGCATGATGAGCATAATGGTGCCGGACAAGCTGTTCGGAGCTCTGGCCGTGGTTCAACTTCTGAACATGGACGCCGGAGGGATTCGAGGGATCAGCATGATGATAAGACAACGAGCAAAAAAACTAATGGTTCACGGCTAAGAAATGAGAAACCTAATGGTGATGAAAACAGGAGCTGGCGTCATGATCGTTACTCAGAATTGGAGGCTGATCTACCAGCTGCAAGGAAAAGACCGGCATTCAGGGAGATGAAGGCTCCACTGGAGTCTGAAGATACTGAAAAAACAGCAGTAGAGACTGCAAAGTCAAGCCATCTTGACCGTTCGATGGATGGAAATAGAAAAAAGGAAGAAAGAAGTGACAACCGACGCCACTTGGATAGATCTGATAAGCAATTTGGGGGAGACAGGGTGCGTCACAAGGGAGAAGCACAGAGGGGTGTCTTTCCTTCAAGAGAAAGGTACACCAATGGTGCTGCTGTCCGCAACTACAGAGGAAGAGATAGATTCGGTGAGAGACAAGAATTTCATTCCAGTGGTGGTCGTGTTGAGAAATGGGAACATGATTTATATCATGAGGCTAACAGGAGTCCAACACCAAAAAATGAAGAGGATCAAATTGCAAAGGTAGAAACTCTTTTGGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

327

Amino Acids

37.84

Weight (kDa)

9.76

Isoelectric Point (pI)

71.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 634
AccB1I GGYRCC 1 cut(s) 350
AccII CGCG 1 cut(s) 12
AciI CCGC 2 cut(s) 160, 814
AclWI GGATC 3 cut(s) 198, 429, 951
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 854
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 3 cut(s) 403, 511, 700
AfaI GTAC 1 cut(s) 794
AfiI CCNNNNNNNGG 1 cut(s) 658
AgsI TTSAA 4 cut(s) 101, 173, 387, 783
AjnI CCWGG 4 cut(s) 135, 144, 233, 308
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 4 cut(s) 362, 372, 507, 551
AluI AGCT 4 cut(s) 362, 372, 507, 551
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 4 cut(s) 318, 620, 729, 841
AlwI GGATC 3 cut(s) 198, 429, 951
AlwNI CAGNNNCTG 1 cut(s) 507
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 4 cut(s) 157, 331, 551, 806
ApoI RAATTY 1 cut(s) 854
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AspLEI GCGC 1 cut(s) 165
AsuHPI GGTGA 2 cut(s) 503, 854
AvaI CYCGRG 1 cut(s) 188
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 2 cut(s) 232, 374
BbsI GAAGAC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 4 cut(s) 169, 343, 538, 793
BccI CCATC 3 cut(s) 651, 652, 656
BceAI ACGGC 2 cut(s) 363, 482
BciT130I CCWGG 4 cut(s) 137, 146, 235, 310
BcoDI GTCTC 4 cut(s) 318, 620, 729, 841
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 820
BglII AGATCT 1 cut(s) 713
BisI GCNGC 5 cut(s) 158, 161, 332, 552, 807
BlsI GCNGC 5 cut(s) 159, 162, 333, 553, 808
Bme1390I CCNGG 4 cut(s) 137, 146, 235, 310
BmeT110I CYCGRG 1 cut(s) 188
BmiI GGNNCC 4 cut(s) 54, 231, 352, 588
BmrFI CCNGG 4 cut(s) 137, 146, 235, 310
BmrI ACTGGG 2 cut(s) 51, 252
BmsI GCATC 3 cut(s) 166, 238, 283
BmuI ACTGGG 2 cut(s) 51, 252
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 900
BsaHI GRCGYC 3 cut(s) 403, 511, 700
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 4 cut(s) 213, 233, 308, 379
BsaXI ACNNNNNCTCC 4 cut(s) 496, 526, 726, 756
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 4 cut(s) 57, 258, 597, 864
Bse3DI GCAATG 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 900
BseBI CCWGG 4 cut(s) 137, 146, 235, 310
BseDI CCNNGG 4 cut(s) 213, 233, 308, 379
BseGI GGATG 3 cut(s) 85, 145, 667
BseJI GATNNNNATC 1 cut(s) 900
BseLI CCNNNNNNNGG 1 cut(s) 658
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 4 cut(s) 57, 258, 597, 864
BseXI GCAGC 4 cut(s) 169, 343, 538, 793
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 378
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 3 cut(s) 354, 406, 566
BslFI GGGAC 2 cut(s) 45, 178
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 4 cut(s) 318, 620, 729, 841
BsmFI GGGAC 2 cut(s) 45, 178
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 1 cut(s) 378
Bso31I GGTCTC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 232, 374
Bsp143I GATC 7 cut(s) 203, 317, 421, 517, 541, 713, 943
BspACI CCGC 2 cut(s) 160, 814
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 1 cut(s) 539
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 2 cut(s) 514, 904
BspLI GGNNCC 4 cut(s) 54, 231, 352, 588
BspPI GGATC 3 cut(s) 198, 429, 951
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 4 cut(s) 57, 258, 597, 864
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 4 cut(s) 213, 233, 308, 379
BssMI GATC 7 cut(s) 203, 317, 421, 517, 541, 713, 943
BssNI GRCGYC 3 cut(s) 403, 511, 700
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 4 cut(s) 137, 146, 235, 310
Bst4CI ACNGT 2 cut(s) 35, 653
Bst6I CTCTTC 3 cut(s) 292, 823, 933
BstACI GRCGYC 3 cut(s) 403, 511, 700
BstC8I GCNNGC 2 cut(s) 167, 509
BstDEI CTNAG 2 cut(s) 470, 526
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 3 cut(s) 85, 145, 667
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 7 cut(s) 206, 320, 424, 520, 544, 716, 946
BstMAI GTCTC 4 cut(s) 318, 620, 729, 841
BstMBI GATC 7 cut(s) 203, 317, 421, 517, 541, 713, 943
BstMWI GCNNNNNNNGC 3 cut(s) 166, 340, 359
BstNI CCWGG 4 cut(s) 137, 146, 235, 310
BstSCI CCNGG 4 cut(s) 135, 144, 233, 308
BstSFI CTRYAG 1 cut(s) 820
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 4 cut(s) 169, 343, 538, 793
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 713
BstYI RGATCY 1 cut(s) 713
BsuRI GGCC 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 3 cut(s) 85, 145, 667
BtsIMutI CAGTG 3 cut(s) 265, 590, 871
Cac8I GCNNGC 2 cut(s) 167, 509
CaiI CAGNNNCTG 1 cut(s) 507
CciI TCATGA 2 cut(s) 514, 904
CfoI GCGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 565
CseI GACGC 5 cut(s) 18, 411, 500, 708, 734
Csp6I GTAC 1 cut(s) 793
CviAII CATG 6 cut(s) 335, 398, 428, 515, 893, 905
CviQI GTAC 1 cut(s) 793
DdeI CTNAG 2 cut(s) 470, 526
DpnI GATC 7 cut(s) 205, 319, 423, 519, 543, 715, 945
DpnII GATC 7 cut(s) 203, 317, 421, 517, 541, 713, 943
DrdI GACNNNNNNGTC 1 cut(s) 634
DseDI GACNNNNNNGTC 1 cut(s) 634
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 292, 823, 933
EarI CTCTTC 3 cut(s) 292, 823, 933
Ecl136II GAGCTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 2 cut(s) 232, 374
Eco31I GGTCTC 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 621
Eco88I CYCGRG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 372
EcoRII CCWGG 4 cut(s) 135, 144, 233, 308
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 2 cut(s) 232, 374
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 6 cut(s) 338, 401, 431, 518, 896, 908
FaqI GGGAC 2 cut(s) 45, 178
FatI CATG 6 cut(s) 334, 397, 427, 514, 892, 904
Fnu4HI GCNGC 5 cut(s) 158, 161, 332, 552, 807
FokI GGATG 3 cut(s) 92, 152, 674
FriOI GRGCYC 2 cut(s) 232, 374
Fsp4HI GCNGC 5 cut(s) 158, 161, 332, 552, 807
FspBI CTAG 1 cut(s) 72
GlaI GCGC 1 cut(s) 164
GluI GCNGC 5 cut(s) 158, 161, 332, 552, 807
GsuI CTGGAG 1 cut(s) 614
HaeIII GGCC 1 cut(s) 378
HapII CCGG 3 cut(s) 354, 406, 566
HgaI GACGC 5 cut(s) 18, 411, 500, 708, 734
HhaI GCGC 1 cut(s) 165
Hin1I GRCGYC 3 cut(s) 403, 511, 700
Hin1II CATG 6 cut(s) 338, 401, 431, 518, 896, 908
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 9 cut(s) 14, 20, 93, 191, 242, 413, 596, 837, 919
HpaII CCGG 3 cut(s) 354, 406, 566
HphI GGTGA 2 cut(s) 503, 854
Hpy166II GTNNAC 3 cut(s) 263, 464, 795
Hpy188I TCNGA 8 cut(s) 19, 247, 292, 369, 394, 529, 601, 718
Hpy188III TCNNGA 9 cut(s) 6, 24, 173, 269, 315, 515, 647, 783, 905
Hpy8I GTNNAC 3 cut(s) 263, 464, 795
Hpy99I CGWCG 2 cut(s) 12, 702
HpyAV CCTTC 3 cut(s) 232, 577, 789
HpyCH4III ACNGT 2 cut(s) 35, 653
HpyCH4V TGCA 6 cut(s) 122, 179, 296, 554, 632, 953
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 340, 359
HpyF3I CTNAG 2 cut(s) 470, 526
Hsp92I GRCGYC 3 cut(s) 403, 511, 700
Hsp92II CATG 6 cut(s) 338, 401, 431, 518, 896, 908
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 7 cut(s) 203, 317, 421, 517, 541, 713, 943
LmnI GCTCC 4 cut(s) 235, 369, 504, 592
Lsp1109I GCAGC 4 cut(s) 169, 343, 538, 793
LweI GCATC 3 cut(s) 166, 238, 283
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 521, 689, 746
MalI GATC 7 cut(s) 205, 319, 423, 519, 543, 715, 945
MboI GATC 7 cut(s) 203, 317, 421, 517, 541, 713, 943
MboII GAAGA 6 cut(s) 139, 279, 614, 692, 840, 950
MflI RGATCY 1 cut(s) 713
MhlI GDGCHC 2 cut(s) 232, 374
MluCI AATT 4 cut(s) 530, 725, 854, 948
MlyI GAGTC 5 cut(s) 102, 200, 251, 605, 928
MmeI TCCRAC 1 cut(s) 947
Mph1103I ATGCAT 1 cut(s) 181
MslI CAYNNNNRTG 2 cut(s) 348, 864
MspA1I CMGCKG 2 cut(s) 160, 551
MspI CCGG 3 cut(s) 354, 406, 566
MspR9I CCNGG 4 cut(s) 137, 146, 235, 310
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 4 cut(s) 137, 146, 235, 310
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 166, 340, 359
NdeII GATC 7 cut(s) 203, 317, 421, 517, 541, 713, 943
NlaIII CATG 6 cut(s) 338, 401, 431, 518, 896, 908
NlaIV GGNNCC 4 cut(s) 54, 231, 352, 588
NmuCI GTSAC 2 cut(s) 689, 746
NsiI ATGCAT 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 188
PagI TCATGA 2 cut(s) 514, 904
PctI GAATGC 1 cut(s) 569
PfeI GAWTC 4 cut(s) 14, 20, 413, 837
PflFI GACNNNGTC 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 5 cut(s) 159, 162, 333, 553, 808
PleI GAGTC 5 cut(s) 101, 199, 250, 604, 927
PpsI GAGTC 5 cut(s) 101, 199, 250, 604, 927
Psp124BI GAGCTC 1 cut(s) 374
Psp6I CCWGG 4 cut(s) 135, 144, 233, 308
PspGI CCWGG 4 cut(s) 135, 144, 233, 308
PspN4I GGNNCC 4 cut(s) 54, 231, 352, 588
PspXI VCTCGAGB 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 507
PsuI RGATCY 1 cut(s) 713
PsyI GACNNNGTC 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 1 cut(s) 794
RsaNI GTAC 1 cut(s) 793
RseI CAYNNNNRTG 2 cut(s) 348, 864
SacI GAGCTC 1 cut(s) 374
SatI GCNGC 5 cut(s) 158, 161, 332, 552, 807
Sau3AI GATC 7 cut(s) 203, 317, 421, 517, 541, 713, 943
SchI GAGTC 5 cut(s) 102, 200, 251, 605, 928
ScrFI CCNGG 4 cut(s) 137, 146, 235, 310
SduI GDGCHC 2 cut(s) 232, 374
SetI ASST 9 cut(s) 71, 219, 364, 374, 487, 509, 553, 794, 960
SfaNI GCATC 3 cut(s) 166, 238, 283
SfcI CTRYAG 1 cut(s) 820
Sfr274I CTCGAG 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 348, 864
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 4 cut(s) 530, 725, 854, 948
SsiI CCGC 2 cut(s) 160, 814
SspMI CTAG 1 cut(s) 72
SstI GAGCTC 1 cut(s) 374
StyD4I CCNGG 4 cut(s) 135, 144, 233, 308
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 35, 653
TaqI TCGA 5 cut(s) 45, 189, 316, 416, 656
TasI AATT 4 cut(s) 530, 725, 854, 948
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 4 cut(s) 14, 20, 413, 837
TscAI CASTG 3 cut(s) 265, 597, 871
TseFI GTSAC 2 cut(s) 689, 746
TseI GCWGC 4 cut(s) 157, 331, 551, 806
Tsp45I GTSAC 2 cut(s) 689, 746
TspDTI ATGAA 6 cut(s) 315, 510, 596, 848, 951, 966
TspRI CASTG 3 cut(s) 265, 597, 871
Tth111I GACNNNGTC 1 cut(s) 92
XapI RAATTY 1 cut(s) 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.