RLG00000014982

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011131
Physical Location & Seq
Forward (+)
60303063 .. 60303934
872 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014982

Sequence Viewer

Length: 411 bp
ATGTCCCGACGAGACAGTCGCGATTCTGATTCCAGACGACACCGTTCCAGGTTCGACAGGGAACCCAGTCCCAAGAGGTATAGGAGGGATGAGCAAGACAACAAAGATAGAGTCTTTGAGAAGAGTAATTTGAAGGGTGCAAAGAAGACTGACCAGGAGGTCCAGGATCAAAGGCAGCGCCGCAGGCTGCAAGATGCATTGCCGCTTGAGTCCCCATTAGGATCCGATGCCAAGGTGGAAAGTGGGGCTCCCAGGAAGGAGTCTGATACGAAACCCAGCGGACATCAAGAACTCACCAAAAACTCTTCTGATGCAACTGAAGCACCCCGGTCTCGATCTTATTTTCAGGTGCTGGATATATTTATGAATCTCTTCAACTTATTTCCCGTTGTATGCAGAATTTGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

137

Amino Acids

15.97

Weight (kDa)

9.87

Isoelectric Point (pI)

89.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 15, 158
AccII CGCG 1 cut(s) 21
AciI CCGC 3 cut(s) 181, 203, 279
AclWI GGATC 3 cut(s) 174, 216, 229
AcsI RAATTY 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 339
AgsI TTSAA 2 cut(s) 133, 376
AjnI CCWGG 4 cut(s) 47, 153, 162, 251
Alw26I GTCTC 2 cut(s) 6, 336
AlwI GGATC 3 cut(s) 174, 216, 229
AlwNI CAGNNNCTG 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 175, 187
ApoI RAATTY 1 cut(s) 399
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 160
BamHI GGATCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 174, 187
BciT130I CCWGG 4 cut(s) 49, 155, 164, 253
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 6, 336
BfoI RGCGCY 1 cut(s) 181
BisI GCNGC 4 cut(s) 176, 181, 188, 203
BlsI GCNGC 4 cut(s) 177, 182, 189, 204
Bme1390I CCNGG 5 cut(s) 49, 155, 164, 253, 328
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 63, 223, 249
BmrFI CCNGG 5 cut(s) 49, 155, 164, 253, 328
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 3 cut(s) 184, 217, 301
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 328
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 231, 251, 326
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 4 cut(s) 49, 155, 164, 253
BseDI CCNNGG 3 cut(s) 231, 251, 326
BseGI GGATG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 174, 187
BseYI CCCAGC 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 21
BsiSI CCGG 1 cut(s) 328
BslFI GGGAC 2 cut(s) 54, 196
BsmAI GTCTC 2 cut(s) 6, 336
BsmFI GGGAC 2 cut(s) 54, 196
Bso31I GGTCTC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 166, 221, 335
Bsp68I TCGCGA 1 cut(s) 21
BspACI CCGC 3 cut(s) 181, 203, 279
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 3 cut(s) 63, 223, 249
BspPI GGATC 3 cut(s) 174, 216, 229
BspTNI GGTCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 197
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 3 cut(s) 231, 251, 326
BssMI GATC 3 cut(s) 166, 221, 335
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 4 cut(s) 49, 155, 164, 253
Bst4CI ACNGT 2 cut(s) 17, 44
Bst6I CTCTTC 3 cut(s) 116, 310, 377
BstC8I GCNNGC 1 cut(s) 185
BstF5I GGATG 1 cut(s) 94
BstFNI CGCG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 3 cut(s) 169, 224, 338
BstMAI GTCTC 2 cut(s) 6, 336
BstMBI GATC 3 cut(s) 166, 221, 335
BstMWI GCNNNNNNNGC 2 cut(s) 184, 320
BstNI CCWGG 4 cut(s) 49, 155, 164, 253
BstSCI CCNGG 5 cut(s) 47, 153, 162, 251, 326
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 174, 187
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BtsCI GGATG 1 cut(s) 94
BtuMI TCGCGA 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 160
CviJI RGCY 2 cut(s) 187, 248
CviKI_1 RGCY 2 cut(s) 187, 248
DpnI GATC 3 cut(s) 168, 223, 337
DpnII GATC 3 cut(s) 166, 221, 335
DrdI GACNNNNNNGTC 2 cut(s) 15, 158
DseDI GACNNNNNNGTC 2 cut(s) 15, 158
Eam1104I CTCTTC 3 cut(s) 116, 310, 377
EarI CTCTTC 3 cut(s) 116, 310, 377
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 339
EcoRII CCWGG 4 cut(s) 47, 153, 162, 251
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 231
FaiI YATR 4 cut(s) 81, 359, 365, 394
FaqI GGGAC 2 cut(s) 54, 196
Fnu4HI GCNGC 4 cut(s) 176, 181, 188, 203
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 4 cut(s) 176, 181, 188, 203
GlaI GCGC 1 cut(s) 179
GluI GCNGC 4 cut(s) 176, 181, 188, 203
GsaI CCCAGC 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 181
HapII CCGG 1 cut(s) 328
HhaI GCGC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 6 cut(s) 23, 29, 111, 209, 260, 367
HpaII CCGG 1 cut(s) 328
HphI GGTGA 1 cut(s) 286
Hpy188I TCNGA 4 cut(s) 28, 226, 265, 310
Hpy188III TCNNGA 5 cut(s) 6, 20, 33, 287, 333
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 127, 250
HpyCH4III ACNGT 2 cut(s) 17, 44
HpyCH4V TGCA 5 cut(s) 140, 190, 197, 314, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 320
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 3 cut(s) 166, 221, 335
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 2 cut(s) 174, 187
LweI GCATC 3 cut(s) 184, 217, 301
MalI GATC 3 cut(s) 168, 223, 337
MboI GATC 3 cut(s) 166, 221, 335
MboII GAAGA 4 cut(s) 133, 157, 297, 364
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 2 cut(s) 127, 399
MlyI GAGTC 3 cut(s) 120, 218, 269
MnlI CCTC 3 cut(s) 69, 78, 151
Mph1103I ATGCAT 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 279
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 5 cut(s) 49, 155, 164, 253, 328
MvaI CCWGG 4 cut(s) 49, 155, 164, 253
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 184, 320
NciI CCSGG 1 cut(s) 328
NdeII GATC 3 cut(s) 166, 221, 335
NlaIV GGNNCC 3 cut(s) 63, 223, 249
NruI TCGCGA 1 cut(s) 21
NsiI ATGCAT 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 3 cut(s) 23, 29, 367
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 4 cut(s) 177, 182, 189, 204
PleI GAGTC 3 cut(s) 119, 217, 268
PpsI GAGTC 3 cut(s) 119, 217, 268
Psp6I CCWGG 4 cut(s) 47, 153, 162, 251
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 4 cut(s) 47, 153, 162, 251
PspN4I GGNNCC 3 cut(s) 63, 223, 249
PspPI GGNCC 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 221
RruI TCGCGA 1 cut(s) 21
SatI GCNGC 4 cut(s) 176, 181, 188, 203
Sau3AI GATC 3 cut(s) 166, 221, 335
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 3 cut(s) 120, 218, 269
ScrFI CCNGG 5 cut(s) 49, 155, 164, 253, 328
SduI GDGCHC 1 cut(s) 250
SetI ASST 5 cut(s) 53, 80, 162, 237, 351
SfaNI GCATC 3 cut(s) 184, 217, 301
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 127, 399
SsiI CCGC 3 cut(s) 181, 203, 279
StyD4I CCNGG 5 cut(s) 47, 153, 162, 251, 326
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 17, 44
TaqI TCGA 2 cut(s) 54, 334
TasI AATT 2 cut(s) 127, 399
TauI GCSGC 2 cut(s) 183, 205
TfiI GAWTC 3 cut(s) 23, 29, 367
TseI GCWGC 2 cut(s) 175, 187
TspDTI ATGAA 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 371
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.