FvH4_2g03741

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011131
Physical Location & Seq
Reverse (-)
2979293 .. 2980807
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03741.t1

Sequence Viewer

Length: 366 bp
ATGTCCCGACGCGATTCTGATTCCAGACGACACCGTTCCAAGTTCGACAGGGAACCCAGTCCCAAGAGGTCTAGGAGGGATGAGAAAGGCAGGGTCCTTGAAAAGAGTAATGTGGGGGGTGCAAAGAAGACTTACCAGGATGTCCTGGAACAAAAGCAGCAGCACAGGCTTCAAGATGCATTGCCACTCGAGTCCCCATTACGATCCAATGCCAAGGTGGAAAGTGGGGCTCCCAGGAAGGAGTCAGATGCGAAACCCAGTGGACATCAAGCACTAACCAAAAACTCTTCTGATCCAAATGAAGTTCCCTGGTCTCGATCATATTTTCAGCATCATGAGCGTGGTGGTGCCGGGCAAGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

122

Amino Acids

13.74

Weight (kDa)

10.17

Isoelectric Point (pI)

87.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 12
AclWI GGATC 2 cut(s) 198, 287
AgsI TTSAA 2 cut(s) 101, 173
AjnI CCWGG 4 cut(s) 135, 144, 233, 308
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 2 cut(s) 198, 287
Ama87I CYCGRG 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 157, 160
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 134
BbvI GCAGC 2 cut(s) 169, 172
BciT130I CCWGG 4 cut(s) 137, 146, 235, 310
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 72
BisI GCNGC 2 cut(s) 158, 161
BlsI GCNGC 2 cut(s) 159, 162
Bme1390I CCNGG 5 cut(s) 137, 146, 235, 310, 352
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 4 cut(s) 54, 95, 231, 349
BmrFI CCNGG 5 cut(s) 137, 146, 235, 310, 352
BmrI ACTGGG 2 cut(s) 51, 252
BmsI GCATC 3 cut(s) 166, 238, 340
BmuI ACTGGG 2 cut(s) 51, 252
BpiI GAAGAC 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 213, 233, 308
Bse1I ACTGG 2 cut(s) 57, 258
Bse3DI GCAATG 1 cut(s) 179
BseBI CCWGG 4 cut(s) 137, 146, 235, 310
BseDI CCNNGG 3 cut(s) 213, 233, 308
BseGI GGATG 2 cut(s) 85, 145
BseMI GCAATG 1 cut(s) 179
BseNI ACTGG 2 cut(s) 57, 258
BseXI GCAGC 2 cut(s) 169, 172
Bsh1236I CGCG 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 2 cut(s) 45, 178
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 2 cut(s) 45, 178
Bso31I GGTCTC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 3 cut(s) 203, 292, 317
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 4 cut(s) 54, 95, 231, 349
BspPI GGATC 2 cut(s) 198, 287
BspT107I GGYRCC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 179
BsrI ACTGG 2 cut(s) 57, 258
BssECI CCNNGG 3 cut(s) 213, 233, 308
BssMI GATC 3 cut(s) 203, 292, 317
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 4 cut(s) 137, 146, 235, 310
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 357
BstF5I GGATG 2 cut(s) 85, 145
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 3 cut(s) 206, 295, 320
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 3 cut(s) 203, 292, 317
BstMWI GCNNNNNNNGC 3 cut(s) 166, 337, 356
BstNI CCWGG 4 cut(s) 137, 146, 235, 310
BstSCI CCNGG 5 cut(s) 135, 144, 233, 308, 350
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 169, 172
BstV2I GAAGAC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 85, 145
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 357
CciI TCATGA 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 1 cut(s) 18
CviAII CATG 1 cut(s) 335
CviJI RGCY 3 cut(s) 169, 230, 359
CviKI_1 RGCY 3 cut(s) 169, 230, 359
DpnI GATC 3 cut(s) 205, 294, 319
DpnII GATC 3 cut(s) 203, 292, 317
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 4 cut(s) 135, 144, 233, 308
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 338
FaiI YATR 2 cut(s) 322, 336
FaqI GGGAC 2 cut(s) 45, 178
FatI CATG 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 158, 161
FokI GGATG 2 cut(s) 92, 152
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 2 cut(s) 158, 161
FspBI CTAG 1 cut(s) 72
GluI GCNGC 2 cut(s) 158, 161
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 338
HinfI GANTC 4 cut(s) 14, 20, 191, 242
HpaII CCGG 1 cut(s) 351
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 19, 247, 292
Hpy188III TCNNGA 5 cut(s) 6, 24, 173, 315, 335
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 122, 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 337, 356
Hsp92II CATG 1 cut(s) 338
Kzo9I GATC 3 cut(s) 203, 292, 317
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 2 cut(s) 169, 172
LweI GCATC 3 cut(s) 166, 238, 340
MaeI CTAG 1 cut(s) 72
MalI GATC 3 cut(s) 205, 294, 319
MboI GATC 3 cut(s) 203, 292, 317
MboII GAAGA 2 cut(s) 139, 279
MhlI GDGCHC 1 cut(s) 232
MlyI GAGTC 2 cut(s) 200, 251
MnlI CCTC 2 cut(s) 60, 69
Mph1103I ATGCAT 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 5 cut(s) 137, 146, 235, 310, 352
MvaI CCWGG 4 cut(s) 137, 146, 235, 310
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 166, 337, 356
NciI CCSGG 1 cut(s) 352
NdeII GATC 3 cut(s) 203, 292, 317
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 4 cut(s) 54, 95, 231, 349
NsiI ATGCAT 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 188
PagI TCATGA 1 cut(s) 334
PfeI GAWTC 2 cut(s) 14, 20
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 2 cut(s) 159, 162
PleI GAGTC 2 cut(s) 199, 250
PpsI GAGTC 2 cut(s) 199, 250
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 4 cut(s) 135, 144, 233, 308
PspGI CCWGG 4 cut(s) 135, 144, 233, 308
PspN4I GGNNCC 4 cut(s) 54, 95, 231, 349
PspPI GGNCC 1 cut(s) 94
PspPPI RGGWCCY 1 cut(s) 94
PspXI VCTCGAGB 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 339
SatI GCNGC 2 cut(s) 158, 161
Sau3AI GATC 3 cut(s) 203, 292, 317
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 2 cut(s) 200, 251
ScrFI CCNGG 5 cut(s) 137, 146, 235, 310, 352
SduI GDGCHC 1 cut(s) 232
SetI ASST 3 cut(s) 71, 219, 361
SfaNI GCATC 3 cut(s) 166, 238, 340
Sfr274I CTCGAG 1 cut(s) 188
SinI GGWCC 1 cut(s) 94
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 5 cut(s) 135, 144, 233, 308, 350
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 45, 189, 316
TfiI GAWTC 2 cut(s) 14, 20
TscAI CASTG 1 cut(s) 265
TseI GCWGC 2 cut(s) 157, 160
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.