Prupe.8G144600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011131
Physical Location & Seq
Reverse (-)
16089247 .. 16092438
3192 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G144600.2

Sequence Viewer

Length: 984 bp
ATGTCGCGACGAGACAGTCGGGATTCCGACTCAAGACGACATCGTTCCAGATTTGACAGAGAACCCAGTCCTAAGAGGTCCAGGAGGGATGGAAAAGACGAAAAAGAGAGAGTCACCAGCAAAATTAATTCGGAAAGTGCAAAGCAGTCTGACCAGGATCAAAAGCACCAGCCCAGGCTGCAAGATACATTGCCACTTGAATCCCCATTAGCAACTGACTCGAGGGTTGAAAATGGGGCATCCAGAAAAGAGTCTGATAAGAAACCCAGTGGACATCTAGAAGGAACCAAACTCTCTTCTGATCCAACTGATGTACCCCGGTCGCAATCTTATTTTCAGCAGCACGATGAGCGTGGTAATGCCAGGCAAGTTGATCGAAGCTCTCGTCGTGGTTCAGCTGCCGAACGTGGATCGTGGAGGGATTCCAAGGATAGGCATGATGATAGGACAGTGAGCAAGACAACAACTAATGATTCACGGCCAAGAAATGAGAAACCCAAGGGGGATGAAAACAGGACCTGGCGCCATAATGGGTTCTTTGAAATGGAGGCTAATCCACCACCGGAAAGGAAAAGACCTGCATTCAGGGAGAAGAAGATTTCACTGGAGTCAGAAAATGGTGACAAAACAACTGCAGAGACTGCAAAGTCAAACCATCCTGATGCAGAAGGAAGTAGAAAAAGGGAGGAAAGAGGCAACAACCCACGCCACTTGGATAGATCTGAGAAGCAATTTGCAGGAGAGAGGTTGCCTTACAGAGGAGACGCACAACGGGGTTCCTTTCCTTCGAGAGAAAGGTACACTGATGGTGCCAGCCGCAACTATAGAGGAAGAGATAGATTCAGTGGGAGACAAGGGTTTCAATCTAGTGGTGGTCGTGGTGAGAAATGGAAGCATGATTTATATCACGAGGCCAACAGGAGCCCAACACCGAAAAATGAAGAGGATCAAATTGCAAAGGTGGAAACACTTTTGGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

328

Amino Acids

37.72

Weight (kDa)

9.92

Isoelectric Point (pI)

61.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 15, 646
Acc36I ACCTGC 1 cut(s) 586
AccB1I GGYRCC 2 cut(s) 522, 809
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 817
AclWI GGATC 4 cut(s) 165, 296, 418, 954
AcoI YGGCCR 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 523
AfaI GTAC 2 cut(s) 315, 800
AfiI CCNNNNNNNGG 2 cut(s) 432, 758
AgsI TTSAA 4 cut(s) 200, 230, 542, 863
AjnI CCWGG 5 cut(s) 80, 153, 173, 362, 518
AluBI AGCT 2 cut(s) 381, 398
AluI AGCT 2 cut(s) 381, 398
Alw26I GTCTC 4 cut(s) 6, 632, 756, 844
AlwI GGATC 4 cut(s) 165, 296, 418, 954
AlwNI CAGNNNCTG 2 cut(s) 519, 641
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 2 cut(s) 479, 912
ApeKI GCWGC 3 cut(s) 178, 340, 398
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
AseI ATTAAT 1 cut(s) 126
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 78, 516
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 3 cut(s) 106, 632, 893
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 2 cut(s) 78, 516
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BanI GGYRCC 2 cut(s) 522, 809
BanII GRGCYC 1 cut(s) 926
BauI CACGAG 1 cut(s) 908
BbvI GCAGC 3 cut(s) 165, 352, 385
BccI CCATC 3 cut(s) 83, 663, 800
BceAI ACGGC 1 cut(s) 494
BcgI CGANNNNNNTGC 4 cut(s) 201, 235, 356, 390
BciT130I CCWGG 5 cut(s) 82, 155, 175, 364, 520
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 4 cut(s) 6, 632, 756, 844
BfaI CTAG 2 cut(s) 278, 867
BfmI CTRYAG 2 cut(s) 633, 823
BfoI RGCGCY 1 cut(s) 526
BfuAI ACCTGC 1 cut(s) 586
BglII AGATCT 1 cut(s) 719
BisI GCNGC 4 cut(s) 179, 341, 399, 817
BlsI GCNGC 4 cut(s) 180, 342, 400, 818
Bme1390I CCNGG 6 cut(s) 82, 155, 175, 319, 364, 520
Bme18I GGWCC 2 cut(s) 78, 516
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 78, 516
BmiI GGNNCC 5 cut(s) 286, 524, 778, 811, 923
BmrFI CCNGG 6 cut(s) 82, 155, 175, 319, 364, 520
BmrI ACTGGG 2 cut(s) 60, 261
BmsI GCATC 2 cut(s) 248, 652
BmuI ACTGGG 2 cut(s) 60, 261
BpmI CTGGAG 1 cut(s) 626
BpuEI CTTGAG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 903
BsaHI GRCGYC 1 cut(s) 523
BsaJI CCNNGG 4 cut(s) 173, 317, 426, 498
BsaWI WCCGGW 1 cut(s) 562
Bsc4I CCNNNNNNNGG 2 cut(s) 432, 758
Bse1I ACTGG 3 cut(s) 66, 267, 609
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 903
BseBI CCWGG 5 cut(s) 82, 155, 175, 364, 520
BseDI CCNNGG 4 cut(s) 173, 317, 426, 498
BseGI GGATG 4 cut(s) 94, 239, 511, 655
BseJI GATNNNNATC 1 cut(s) 903
BseLI CCNNNNNNNGG 2 cut(s) 432, 758
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 3 cut(s) 66, 267, 609
BseRI GAGGAG 1 cut(s) 774
BseXI GCAGC 3 cut(s) 165, 352, 385
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 481, 914
BshNI GGYRCC 2 cut(s) 522, 809
BsiEI CGRYCG 1 cut(s) 323
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 2 cut(s) 319, 563
BslI CCNNNNNNNGG 2 cut(s) 432, 758
BsmAI GTCTC 4 cut(s) 6, 632, 756, 844
BsmBI CGTCTC 1 cut(s) 756
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 2 cut(s) 481, 914
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 926
Bsp143I GATC 6 cut(s) 157, 301, 373, 410, 719, 946
Bsp68I TCGCGA 1 cut(s) 7
BspACI CCGC 1 cut(s) 817
BspANI GGCC 2 cut(s) 481, 914
BspCNI CTCAG 1 cut(s) 715
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 5 cut(s) 286, 524, 778, 811, 923
BspMAI CTGCAG 1 cut(s) 637
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 4 cut(s) 165, 296, 418, 954
BspT107I GGYRCC 2 cut(s) 522, 809
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 3 cut(s) 66, 267, 609
BssECI CCNNGG 4 cut(s) 173, 317, 426, 498
BssMI GATC 6 cut(s) 157, 301, 373, 410, 719, 946
BssNI GRCGYC 1 cut(s) 523
BssSI CACGAG 1 cut(s) 908
BssT1I CCWWGG 2 cut(s) 426, 498
Bst2BI CACGAG 1 cut(s) 908
Bst2UI CCWGG 5 cut(s) 82, 155, 175, 364, 520
Bst4CI ACNGT 2 cut(s) 17, 451
Bst6I CTCTTC 3 cut(s) 301, 826, 936
BstACI GRCGYC 1 cut(s) 523
BstAPI GCANNNNNTGC 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 814
BstDEI CTNAG 2 cut(s) 72, 723
BstENI CCTNNNNNAGG 1 cut(s) 756
BstF5I GGATG 4 cut(s) 94, 239, 511, 655
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 6 cut(s) 160, 304, 376, 413, 722, 949
BstMAI GTCTC 4 cut(s) 6, 632, 756, 844
BstMBI GATC 6 cut(s) 157, 301, 373, 410, 719, 946
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 3 cut(s) 178, 349, 641
BstNI CCWGG 5 cut(s) 82, 155, 175, 364, 520
BstSCI CCNGG 6 cut(s) 80, 153, 173, 317, 362, 518
BstSFI CTRYAG 2 cut(s) 633, 823
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 3 cut(s) 165, 352, 385
BstX2I RGATCY 1 cut(s) 719
BstYI RGATCY 1 cut(s) 719
BsuRI GGCC 2 cut(s) 481, 914
BtsCI GGATG 4 cut(s) 94, 239, 511, 655
BtsIMutI CAGTG 5 cut(s) 274, 456, 602, 801, 850
BtuMI TCGCGA 1 cut(s) 7
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 1 cut(s) 814
CaiI CAGNNNCTG 2 cut(s) 519, 641
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 78, 516
CseI GACGC 1 cut(s) 773
Csp6I GTAC 2 cut(s) 314, 799
CspCI CAANNNNNGTGG 2 cut(s) 693, 728
CviAII CATG 2 cut(s) 437, 896
CviQI GTAC 2 cut(s) 314, 799
DdeI CTNAG 2 cut(s) 72, 723
DinI GGCGCC 1 cut(s) 524
DpnI GATC 6 cut(s) 159, 303, 375, 412, 721, 948
DpnII GATC 6 cut(s) 157, 301, 373, 410, 719, 946
DrdI GACNNNNNNGTC 2 cut(s) 15, 646
DseDI GACNNNNNNGTC 2 cut(s) 15, 646
EaeI YGGCCR 1 cut(s) 479
Eam1104I CTCTTC 3 cut(s) 301, 826, 936
EarI CTCTTC 3 cut(s) 301, 826, 936
Eco130I CCWWGG 2 cut(s) 426, 498
Eco24I GRGCYC 1 cut(s) 926
Eco47I GGWCC 2 cut(s) 78, 516
Eco88I CYCGRG 1 cut(s) 220
EcoNI CCTNNNNNAGG 1 cut(s) 756
EcoO109I RGGNCCY 1 cut(s) 516
EcoRII CCWGG 5 cut(s) 80, 153, 173, 362, 518
EcoT14I CCWWGG 2 cut(s) 426, 498
EcoT38I GRGCYC 1 cut(s) 926
EgeI GGCGCC 1 cut(s) 524
EheI GGCGCC 1 cut(s) 524
ErhI CCWWGG 2 cut(s) 426, 498
Esp3I CGTCTC 1 cut(s) 756
FaeI CATG 2 cut(s) 440, 899
FaiI YATR 6 cut(s) 438, 528, 825, 897, 904, 982
FatI CATG 2 cut(s) 436, 895
Fnu4HI GCNGC 4 cut(s) 179, 341, 399, 817
FokI GGATG 4 cut(s) 101, 226, 518, 642
FriOI GRGCYC 1 cut(s) 926
Fsp4HI GCNGC 4 cut(s) 179, 341, 399, 817
FspBI CTAG 2 cut(s) 278, 867
GlaI GCGC 1 cut(s) 524
GluI GCNGC 4 cut(s) 179, 341, 399, 817
GsuI CTGGAG 1 cut(s) 626
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 2 cut(s) 481, 914
HapII CCGG 2 cut(s) 319, 563
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 525
Hin1I GRCGYC 1 cut(s) 523
Hin1II CATG 2 cut(s) 440, 899
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HpaII CCGG 2 cut(s) 319, 563
HphI GGTGA 3 cut(s) 106, 632, 893
Hpy166II GTNNAC 2 cut(s) 272, 801
Hpy188I TCNGA 7 cut(s) 28, 133, 151, 256, 301, 613, 724
Hpy188III TCNNGA 9 cut(s) 6, 20, 33, 48, 243, 278, 659, 789, 908
Hpy8I GTNNAC 2 cut(s) 272, 801
Hpy99I CGWCG 2 cut(s) 12, 390
HpyAV CCTTC 3 cut(s) 275, 662, 795
HpyCH4III ACNGT 2 cut(s) 17, 451
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 8 cut(s) 140, 181, 581, 635, 644, 665, 737, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 349, 641
HpyF3I CTNAG 2 cut(s) 72, 723
HpySE526I ACGT 1 cut(s) 406
Hsp92I GRCGYC 1 cut(s) 523
Hsp92II CATG 2 cut(s) 440, 899
HspAI GCGC 1 cut(s) 523
KasI GGCGCC 1 cut(s) 522
Kzo9I GATC 6 cut(s) 157, 301, 373, 410, 719, 946
LmnI GCTCC 1 cut(s) 921
Lsp1109I GCAGC 3 cut(s) 165, 352, 385
LweI GCATC 2 cut(s) 248, 652
MaeI CTAG 2 cut(s) 278, 867
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 112, 620
MalI GATC 6 cut(s) 159, 303, 375, 412, 721, 948
MboI GATC 6 cut(s) 157, 301, 373, 410, 719, 946
MboII GAAGA 5 cut(s) 288, 604, 607, 843, 953
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 1 cut(s) 926
MluCI AATT 4 cut(s) 123, 127, 731, 951
Mly113I GGCGCC 1 cut(s) 523
MlyI GAGTC 5 cut(s) 23, 120, 212, 260, 617
MmeI TCCRAC 2 cut(s) 51, 329
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 2 cut(s) 319, 563
MspR9I CCNGG 6 cut(s) 82, 155, 175, 319, 364, 520
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 5 cut(s) 82, 155, 175, 364, 520
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 178, 349, 641
NarI GGCGCC 1 cut(s) 523
NciI CCSGG 1 cut(s) 319
NdeII GATC 6 cut(s) 157, 301, 373, 410, 719, 946
NlaIII CATG 2 cut(s) 440, 899
NlaIV GGNNCC 5 cut(s) 286, 524, 778, 811, 923
NmuCI GTSAC 2 cut(s) 112, 620
NruI TCGCGA 1 cut(s) 7
PaeR7I CTCGAG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 5 cut(s) 23, 200, 422, 473, 840
PfoI TCCNGGA 1 cut(s) 80
PkrI GCNGC 4 cut(s) 180, 342, 400, 818
PleI GAGTC 5 cut(s) 23, 119, 212, 259, 616
PluTI GGCGCC 1 cut(s) 526
PpsI GAGTC 5 cut(s) 23, 119, 212, 259, 616
PpuMI RGGWCCY 1 cut(s) 516
PshBI ATTAAT 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 516
Psp6I CCWGG 5 cut(s) 80, 153, 173, 362, 518
PspGI CCWGG 5 cut(s) 80, 153, 173, 362, 518
PspN4I GGNNCC 5 cut(s) 286, 524, 778, 811, 923
PspPI GGNCC 2 cut(s) 78, 516
PspPPI RGGWCCY 1 cut(s) 516
PspXI VCTCGAGB 1 cut(s) 220
PstI CTGCAG 1 cut(s) 637
PstNI CAGNNNCTG 2 cut(s) 519, 641
PsuI RGATCY 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 398
RruI TCGCGA 1 cut(s) 7
RsaI GTAC 2 cut(s) 315, 800
RsaNI GTAC 2 cut(s) 314, 799
RseI CAYNNNNRTG 1 cut(s) 660
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 4 cut(s) 179, 341, 399, 817
Sau3AI GATC 6 cut(s) 157, 301, 373, 410, 719, 946
Sau96I GGNCC 2 cut(s) 78, 516
SchI GAGTC 5 cut(s) 23, 120, 212, 260, 617
ScrFI CCNGG 6 cut(s) 82, 155, 175, 319, 364, 520
SduI GDGCHC 1 cut(s) 926
SetI ASST 9 cut(s) 80, 383, 400, 409, 521, 580, 749, 800, 963
SfaNI GCATC 2 cut(s) 248, 652
SfcI CTRYAG 2 cut(s) 633, 823
SfoI GGCGCC 1 cut(s) 524
Sfr274I CTCGAG 1 cut(s) 220
SinI GGWCC 2 cut(s) 78, 516
SlaI CTCGAG 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 2 cut(s) 31, 220
SmoI CTYRAG 2 cut(s) 31, 220
Sse9I AATT 4 cut(s) 123, 127, 731, 951
SsiI CCGC 1 cut(s) 817
SspDI GGCGCC 1 cut(s) 522
SspMI CTAG 2 cut(s) 278, 867
StyD4I CCNGG 6 cut(s) 80, 153, 173, 317, 362, 518
StyI CCWWGG 2 cut(s) 426, 498
TaaI ACNGT 2 cut(s) 17, 451
TaiI ACGT 1 cut(s) 409
TaqI TCGA 3 cut(s) 221, 376, 788
TasI AATT 4 cut(s) 123, 127, 731, 951
TauI GCSGC 1 cut(s) 819
TfiI GAWTC 5 cut(s) 23, 200, 422, 473, 840
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 5 cut(s) 274, 456, 609, 808, 850
TseFI GTSAC 2 cut(s) 112, 620
TseI GCWGC 3 cut(s) 178, 340, 398
Tsp45I GTSAC 2 cut(s) 112, 620
TspDTI ATGAA 3 cut(s) 522, 954, 969
TspRI CASTG 5 cut(s) 274, 456, 609, 808, 850
VpaK11BI GGWCC 2 cut(s) 78, 516
VspI ATTAAT 1 cut(s) 126
XagI CCTNNNNNAGG 1 cut(s) 756
XbaI TCTAGA 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 220
XspI CTAG 2 cut(s) 278, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.