AT3G23170

at4g14450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010137
Physical Location & Seq
Reverse (-)
8267920 .. 8268961
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23170.1

Sequence Viewer

Length: 324 bp
ATGTCGACGACGATGAAGAGACAGGGCTGCAGCTCAGATTCCGGTGATCTACGGCGGCAGCCCAGTCGTCTACTAAAACGACCCCCGGCGTTAAAAATCGTTCCGGCGACTCCGGCGGCGAATAACTGGAATACGGCTATACCTCTCCTCTCGCCGTTAGCTCTTTCTCCCGAATCATCACCGGTAGACCAACCACCGGTTGAGAAAAATCAGTCGACGGCGGTGGCGGTTGAGAAAACGCCGGTTTTCAAGAAATGGCAACATCCCGCGGCGCCGTTTTATTACGAGTCATCGACGTTTGTTCCACCGTTTGTTCCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.7

Weight (kDa)

9.73

Isoelectric Point (pI)

96.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04330 AT3G23170 AT4G14450
fragaria_vesca FvH4_4g03100 FvH4_7g33480
malus_domestica MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica Prupe.1G034700_v2.0.a1
pyrus_communis pycom13g18280
rosa_chinensis RchiOBHm_Chr4g0391391
rosa_laevigata RLG00000009867
rosa_multiflora Rmu_sc0007466.1_g000006
rosa_roxburghii Rroxscaffold_5G00337120
rosa_rugosa Rorug03G0335800
rosa_samantha Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana Rw4G002900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 271
AccI GTMKAC 4 cut(s) 5, 70, 186, 215
AccII CGCG 1 cut(s) 269
AciI CCGC 6 cut(s) 55, 116, 221, 227, 267, 269
AcyI GRCGYC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 196
AgeI ACCGGT 2 cut(s) 181, 196
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 2 cut(s) 33, 161
AluI AGCT 2 cut(s) 33, 161
Alw26I GTCTC 1 cut(s) 13
ApeKI GCWGC 3 cut(s) 27, 30, 58
AsiGI ACCGGT 2 cut(s) 181, 196
AspLEI GCGC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 56, 171
BanI GGYRCC 1 cut(s) 271
BbvI GCAGC 3 cut(s) 14, 42, 70
BceAI ACGGC 5 cut(s) 68, 139, 150, 234, 259
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 13
BfmI CTRYAG 1 cut(s) 28
BfoI RGCGCY 1 cut(s) 275
BisI GCNGC 6 cut(s) 28, 31, 56, 59, 117, 270
BlsI GCNGC 6 cut(s) 29, 32, 57, 60, 118, 271
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 84, 267
BsaWI WCCGGW 4 cut(s) 41, 181, 196, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 3 cut(s) 181, 196, 241
Bse1I ACTGG 2 cut(s) 63, 131
BseDI CCNNGG 2 cut(s) 84, 267
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 63, 131
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 14, 42, 70
Bsh1236I CGCG 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 271
BshTI ACCGGT 2 cut(s) 181, 196
BsiSI CCGG 8 cut(s) 42, 86, 104, 113, 182, 197, 242, 317
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 6 cut(s) 55, 116, 221, 227, 267, 269
BspCNI CTCAG 1 cut(s) 47
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 273
BspMAI CTGCAG 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 271
BsrFI RCCGGY 3 cut(s) 181, 196, 241
BsrI ACTGG 2 cut(s) 63, 131
BssAI RCCGGY 3 cut(s) 181, 196, 241
BssECI CCNNGG 2 cut(s) 84, 267
BssMI GATC 1 cut(s) 46
BssNI GRCGYC 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 28
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 14, 42, 70
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 262
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 3 cut(s) 181, 196, 241
Cfr42I CCGCGG 1 cut(s) 270
CspAI ACCGGT 2 cut(s) 181, 196
CviJI RGCY 5 cut(s) 27, 33, 61, 137, 161
CviKI_1 RGCY 5 cut(s) 27, 33, 61, 137, 161
DdeI CTNAG 1 cut(s) 34
DinI GGCGCC 1 cut(s) 273
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EgeI GGCGCC 1 cut(s) 273
EheI GGCGCC 1 cut(s) 273
FaiI YATR 1 cut(s) 140
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 4 cut(s) 5, 70, 186, 215
Fnu4HI GCNGC 6 cut(s) 28, 31, 56, 59, 117, 270
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 6 cut(s) 28, 31, 56, 59, 117, 270
GlaI GCGC 1 cut(s) 273
GluI GCNGC 6 cut(s) 28, 31, 56, 59, 117, 270
HaeII RGCGCY 1 cut(s) 275
HapII CCGG 8 cut(s) 42, 86, 104, 113, 182, 197, 242, 317
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 272
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 2 cut(s) 6, 216
HindII GTYRAC 2 cut(s) 6, 216
HinfI GANTC 4 cut(s) 38, 109, 173, 287
HpaII CCGG 8 cut(s) 42, 86, 104, 113, 182, 197, 242, 317
HphI GGTGA 2 cut(s) 56, 171
Hpy166II GTNNAC 4 cut(s) 6, 71, 187, 216
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 170, 250
Hpy8I GTNNAC 4 cut(s) 6, 71, 187, 216
Hpy99I CGWCG 4 cut(s) 10, 13, 220, 298
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 272
HspAI GCGC 1 cut(s) 272
KasI GGCGCC 1 cut(s) 271
KspI CCGCGG 1 cut(s) 270
Kzo9I GATC 1 cut(s) 46
Lsp1109I GCAGC 3 cut(s) 14, 42, 70
MaeII ACGT 1 cut(s) 296
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 28
Mly113I GGCGCC 1 cut(s) 272
MlyI GAGTC 2 cut(s) 103, 296
MnlI CCTC 2 cut(s) 153, 158
MseI TTAA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 8 cut(s) 42, 86, 104, 113, 182, 197, 242, 317
MspR9I CCNGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 113
NarI GGCGCC 1 cut(s) 272
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 38, 173
PinAI ACCGGT 2 cut(s) 181, 196
PkrI GCNGC 6 cut(s) 29, 32, 57, 60, 118, 271
PleI GAGTC 2 cut(s) 103, 295
PluTI GGCGCC 1 cut(s) 275
PpsI GAGTC 2 cut(s) 103, 295
PspN4I GGNNCC 1 cut(s) 273
PstI CTGCAG 1 cut(s) 32
SacII CCGCGG 1 cut(s) 270
SalI GTCGAC 2 cut(s) 4, 214
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 6 cut(s) 28, 31, 56, 59, 117, 270
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 2 cut(s) 103, 296
ScrFI CCNGG 1 cut(s) 86
SetI ASST 4 cut(s) 35, 145, 163, 299
SfcI CTRYAG 1 cut(s) 28
SfoI GGCGCC 1 cut(s) 273
Sfr303I CCGCGG 1 cut(s) 270
SgrBI CCGCGG 1 cut(s) 270
SsiI CCGC 6 cut(s) 55, 116, 221, 227, 267, 269
SspDI GGCGCC 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 1 cut(s) 299
TaqI TCGA 3 cut(s) 5, 215, 293
TauI GCSGC 3 cut(s) 58, 119, 272
TfiI GAWTC 2 cut(s) 38, 173
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 3 cut(s) 27, 30, 58
TspDTI ATGAA 1 cut(s) 29
XmiI GTMKAC 4 cut(s) 5, 70, 186, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.