Rh4CG040400

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010137
Physical Location & Seq
Reverse (-)
8197690 .. 8199866
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG040400.1

Sequence Viewer

Length: 558 bp
ATGAGATTGTTGGTTCAGAATTTGGATATAACTCGGAGGAGATGGAGCCCCCAAATACTCTCATATGTGATCTGGTGCCATAACAGAAACAATCTCTCTATTGGATGTTGCAATTCGAGATGGGGATTGATGTTGACAGAGAGGGCTACTTCAATCTATGCGAACATGCTTCCAGGAACCATACAATTTCCAACTACGCAACAGATGGCAAGACAAGGAATTCTAGCAGATGCAATGGCACTTGGGAAGACTGTGATGACAACTGCTCTAATACTTGCAAGACCAAGGAGAGTAAGCTCCAGTATTATTAATATTACAAAGAAGAGGGAGATAGTTTCAGCTACAAGCTTAGCATTCAAACCAAAGGGGGGCACTCTTATTATCTGTCCCTGGTCTTCTTTAAGCCAGTGGAAGGGCACAGTGGAGGAACGCATGCAACAAGCTCAAGCCAGGTCGAAGCCAATGAATGCCCGTGTGAAAATTCGATCTGCCAGAATTGAGAAGTTCAAAATGCTTTTCACTTTGAATCTCATTGTTTTACATGTTACCGAAATTTAA

Protein Analysis

185

Amino Acids

21.01

Weight (kDa)

11.26

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 67 - 147 7.6e-11 SNF2-related domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04330 AT3G23170 AT4G14450
fragaria_vesca FvH4_4g03100 FvH4_7g33480
malus_domestica MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica Prupe.1G034700_v2.0.a1
pyrus_communis pycom13g18280
rosa_chinensis RchiOBHm_Chr4g0391391
rosa_laevigata RLG00000009867
rosa_multiflora Rmu_sc0007466.1_g000006
rosa_roxburghii Rroxscaffold_5G00337120
rosa_rugosa Rorug03G0335800
rosa_samantha Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana Rw4G002900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 75
AcsI RAATTY 4 cut(s) 19, 219, 480, 552
AfiI CCNNNNNNNGG 2 cut(s) 368, 412
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 4 cut(s) 153, 358, 508, 526
AjnI CCWGG 3 cut(s) 172, 389, 449
AluBI AGCT 4 cut(s) 297, 341, 348, 443
AluI AGCT 4 cut(s) 297, 341, 348, 443
ApoI RAATTY 4 cut(s) 19, 219, 480, 552
AseI ATTAAT 1 cut(s) 309
BaeGI GKGCMC 2 cut(s) 374, 419
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 254, 387
BccI CCATC 3 cut(s) 36, 114, 199
BciT130I CCWGG 3 cut(s) 174, 391, 451
BfaI CTAG 1 cut(s) 224
BlpI GCTNAGC 1 cut(s) 349
Bme1390I CCNGG 3 cut(s) 174, 391, 451
BmiI GGNNCC 3 cut(s) 47, 77, 178
BmrFI CCNGG 3 cut(s) 174, 391, 451
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 2 cut(s) 254, 387
BpmI CTGGAG 1 cut(s) 283
Bpu1102I GCTNAGC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 284, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 412
Bse1I ACTGG 2 cut(s) 300, 406
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 3 cut(s) 174, 391, 451
BseDI CCNNGG 2 cut(s) 284, 389
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 368, 412
BseMI GCAATG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 300, 406
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 2 cut(s) 374, 419
BshNI GGYRCC 1 cut(s) 75
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 368, 412
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 2 cut(s) 353, 472
Bsp1286I GDGCHC 3 cut(s) 50, 374, 419
Bsp143I GATC 2 cut(s) 69, 485
Bsp1720I GCTNAGC 1 cut(s) 349
BspLI GGNNCC 3 cut(s) 47, 77, 178
BspT107I GGYRCC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 2 cut(s) 300, 406
BssECI CCNNGG 2 cut(s) 284, 389
BssMI GATC 2 cut(s) 69, 485
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 3 cut(s) 174, 391, 451
Bst4CI ACNGT 2 cut(s) 253, 421
Bst6I CTCTTC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 110
BstKTI GATC 2 cut(s) 72, 488
BstMBI GATC 2 cut(s) 69, 485
BstNI CCWGG 3 cut(s) 174, 391, 451
BstNSI RCATGY 3 cut(s) 169, 436, 545
BstSCI CCNGG 3 cut(s) 172, 389, 449
BstSLI GKGCMC 2 cut(s) 374, 419
BstV2I GAAGAC 2 cut(s) 254, 387
BtsCI GGATG 1 cut(s) 110
BtsIMutI CAGTG 2 cut(s) 413, 426
Cac8I GCNNGC 1 cut(s) 434
CviAII CATG 3 cut(s) 166, 433, 542
CviJI RGCY 9 cut(s) 48, 146, 297, 341, 348, 405, 443, 449, 460
CviKI_1 RGCY 9 cut(s) 48, 146, 297, 341, 348, 405, 443, 449, 460
DdeI CTNAG 1 cut(s) 349
DpnI GATC 2 cut(s) 71, 487
DpnII GATC 2 cut(s) 69, 485
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 219
EcoRII CCWGG 3 cut(s) 172, 389, 449
EcoT14I CCWWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 3 cut(s) 169, 436, 545
FaiI YATR 9 cut(s) 29, 64, 66, 81, 159, 167, 182, 434, 543
FaqI GGGAC 1 cut(s) 372
FatI CATG 3 cut(s) 165, 432, 541
FauNDI CATATG 1 cut(s) 64
FokI GGATG 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 50
FspBI CTAG 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 283
Hin1II CATG 3 cut(s) 169, 436, 545
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 18, 36
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 2 cut(s) 253, 421
HpyCH4V TGCA 4 cut(s) 111, 233, 278, 436
HpyF3I CTNAG 1 cut(s) 349
Hsp92II CATG 3 cut(s) 169, 436, 545
Kzo9I GATC 2 cut(s) 69, 485
LmnI GCTCC 2 cut(s) 45, 302
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 544
MalI GATC 2 cut(s) 71, 487
MboI GATC 2 cut(s) 69, 485
MboII GAAGA 3 cut(s) 259, 334, 387
MhlI GDGCHC 3 cut(s) 50, 374, 419
MluCI AATT 7 cut(s) 19, 112, 185, 219, 480, 495, 552
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 4 cut(s) 30, 135, 318, 418
MseI TTAA 3 cut(s) 309, 401, 556
MspR9I CCNGG 3 cut(s) 174, 391, 451
Mva1269I GAATGC 2 cut(s) 353, 472
MvaI CCWGG 3 cut(s) 174, 391, 451
NdeI CATATG 1 cut(s) 64
NdeII GATC 2 cut(s) 69, 485
NlaIII CATG 3 cut(s) 169, 436, 545
NlaIV GGNNCC 3 cut(s) 47, 77, 178
NspI RCATGY 3 cut(s) 169, 436, 545
PaeI GCATGC 1 cut(s) 436
PciI ACATGT 1 cut(s) 541
PctI GAATGC 2 cut(s) 353, 472
PfeI GAWTC 1 cut(s) 526
PfoI TCCNGGA 1 cut(s) 172
PscI ACATGT 1 cut(s) 541
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 172, 389, 449
PspGI CCWGG 3 cut(s) 172, 389, 449
PspN4I GGNNCC 3 cut(s) 47, 77, 178
SaqAI TTAA 3 cut(s) 309, 401, 556
Sau3AI GATC 2 cut(s) 69, 485
ScrFI CCNGG 3 cut(s) 174, 391, 451
SduI GDGCHC 3 cut(s) 50, 374, 419
SetI ASST 5 cut(s) 299, 343, 350, 445, 455
SfaNI GCATC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
SphI GCATGC 1 cut(s) 436
Sse9I AATT 7 cut(s) 19, 112, 185, 219, 480, 495, 552
SspI AATATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 3 cut(s) 172, 389, 449
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 253, 421
TaqI TCGA 3 cut(s) 116, 455, 484
TasI AATT 7 cut(s) 19, 112, 185, 219, 480, 495, 552
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 3 cut(s) 309, 401, 556
Tru9I TTAA 3 cut(s) 309, 401, 556
TscAI CASTG 2 cut(s) 413, 426
TspDTI ATGAA 1 cut(s) 479
TspRI CASTG 2 cut(s) 413, 426
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 4 cut(s) 19, 219, 480, 552
XceI RCATGY 3 cut(s) 169, 436, 545
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.