Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010137

Physical Location & Seq

Genomic Coordinates Reverse (-)

14374445 .. 14374792

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCAGAAGCACCGCGACCGAGTTCCGGCAACCGCCGCCAGCCCAGCCGCCTCCAGCGGCGAGCCCCGCCCCCGTCTTCCCTTCAAATAAACCGCGTCCCCGATTGGAACGTCGCCATCCCCCTCCTCTCCCCTCTTGTCTCCCCCGATCAACCGATCGAGGCCAAATCCCGTGACGACTCGCGGTACCAGCGCCAGCACCAGCAGAAGGAGCTCCCGCGCCACCATCATCAGGGCGCGGAGGCTGACAAGTCGGCGCAGGCGGCGGTGTTCAAGAAGTGGCAGCACCCTGCGGCTCCGTTTTGCTACGAGCCGGCCCAGATGGTCCGGCCTTTCGTTCCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.1

Weight (kDa)

10.34

Isoelectric Point (pI)

82.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04330 AT3G23170 AT4G14450
fragaria_vesca	FvH4_4g03100 FvH4_7g33480
malus_domestica	MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica	Prupe.1G034700_v2.0.a1
pyrus_communis	pycom13g18280
rosa_chinensis	RchiOBHm_Chr4g0391391
rosa_laevigata	RLG00000009867
rosa_multiflora	Rmu_sc0007466.1_g000006
rosa_roxburghii	Rroxscaffold_5G00337120
rosa_rugosa	Rorug03G0335800
rosa_samantha	Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana	Rw4G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccII	CGCG	5 cut(s)	16, 96, 184, 220, 239
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	26, 208, 232
AgsI	TTSAA	2 cut(s)	86, 274
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	3 cut(s)	162, 315, 329
ApeKI	GCWGC	1 cut(s)	283
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	4 cut(s)	195, 222, 239, 259
AspS9I	GGNCC	2 cut(s)	316, 325
AvaII	GGWCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	2 cut(s)	67, 216
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	3 cut(s)	125, 234, 316
BcoDI	GTCTC	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	196
BisI	GCNGC	6 cut(s)	37, 49, 59, 264, 284, 294
BlsI	GCNGC	6 cut(s)	38, 50, 60, 265, 285, 295
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	316, 325
BmiI	GGNNCC	2 cut(s)	188, 297
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 208, 232
Bse118I	RCCGGY	1 cut(s)	313
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	26, 208, 232
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	44
Bsh1236I	CGCG	5 cut(s)	16, 96, 184, 220, 239
Bsh1285I	CGRYCG	2 cut(s)	20, 159
BshFI	GGCC	3 cut(s)	164, 317, 331
BshNI	GGYRCC	1 cut(s)	186
BsiEI	CGRYCG	2 cut(s)	20, 159
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	27, 314, 328
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	26, 208, 232
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	164, 317, 331
Bsp1286I	GDGCHC	2 cut(s)	67, 216
Bsp143I	GATC	2 cut(s)	148, 156
BspANI	GGCC	3 cut(s)	164, 317, 331
BspFNI	CGCG	5 cut(s)	16, 96, 184, 220, 239
BspLI	GGNNCC	2 cut(s)	188, 297
BspT107I	GGYRCC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	313
BssMI	GATC	2 cut(s)	148, 156
BstC8I	GCNNGC	5 cut(s)	41, 63, 197, 261, 315
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	5 cut(s)	16, 96, 184, 220, 239
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	4 cut(s)	195, 222, 239, 259
BstKTI	GATC	2 cut(s)	151, 159
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	148, 156
BstMCI	CGRYCG	2 cut(s)	20, 159
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 45, 67, 190, 211, 263
BstUI	CGCG	5 cut(s)	16, 96, 184, 220, 239
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	164, 317, 331
BtsCI	GGATG	1 cut(s)	117
Cac8I	GCNNGC	5 cut(s)	41, 63, 197, 261, 315
CfoI	GCGC	4 cut(s)	195, 222, 239, 259
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	316, 325
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	187
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	2 cut(s)	150, 158
DpnII	GATC	2 cut(s)	148, 156
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	67, 216
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	67, 216
FaqI	GGGAC	1 cut(s)	83
FauI	CCCGC	2 cut(s)	75, 225
Fnu4HI	GCNGC	6 cut(s)	37, 49, 59, 264, 284, 294
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	2 cut(s)	67, 216
Fsp4HI	GCNGC	6 cut(s)	37, 49, 59, 264, 284, 294
GlaI	GCGC	4 cut(s)	194, 221, 238, 258
GluI	GCNGC	6 cut(s)	37, 49, 59, 264, 284, 294
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	3 cut(s)	164, 317, 331
HapII	CCGG	3 cut(s)	27, 314, 328
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	4 cut(s)	195, 222, 239, 259
Hin6I	GCGC	4 cut(s)	193, 220, 237, 257
HinP1I	GCGC	4 cut(s)	193, 220, 237, 257
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	3 cut(s)	27, 314, 328
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	92, 202
HpyCH4IV	ACGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 45, 67, 190, 211, 263
HpySE526I	ACGT	1 cut(s)	111
HspAI	GCGC	4 cut(s)	193, 220, 237, 257
KpnI	GGTACC	1 cut(s)	190
KroI	GCCGGC	1 cut(s)	313
KroNI	GCCGGC	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	148, 156
LmnI	GCTCC	3 cut(s)	211, 219, 301
Lsp1109I	GCAGC	1 cut(s)	295
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	150, 158
MboI	GATC	2 cut(s)	148, 156
MboII	GAAGA	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	67, 216
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	62, 134, 137, 144, 154, 235
MroNI	GCCGGC	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	3 cut(s)	27, 314, 328
MvnI	CGCG	5 cut(s)	16, 96, 184, 220, 239
MwoI	GCNNNNNNNGC	6 cut(s)	36, 45, 67, 190, 211, 263
NaeI	GCCGGC	1 cut(s)	315
NdeII	GATC	2 cut(s)	148, 156
NgoMIV	GCCGGC	1 cut(s)	313
NlaIV	GGNNCC	2 cut(s)	188, 297
NmuCI	GTSAC	1 cut(s)	173
PdiI	GCCGGC	1 cut(s)	315
PkrI	GCNGC	6 cut(s)	38, 50, 60, 265, 285, 295
Ple19I	CGATCG	1 cut(s)	159
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	188, 297
PspPI	GGNCC	2 cut(s)	316, 325
PvuI	CGATCG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	216
SatI	GCNGC	6 cut(s)	37, 49, 59, 264, 284, 294
Sau3AI	GATC	2 cut(s)	148, 156
Sau96I	GGNCC	2 cut(s)	316, 325
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	67, 216
SetI	ASST	2 cut(s)	114, 216
SinI	GGWCC	1 cut(s)	325
SstI	GAGCTC	1 cut(s)	216
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	159
TaqII	GACCGA	1 cut(s)	34
TauI	GCSGC	5 cut(s)	39, 51, 61, 266, 296
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.