Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010137

Physical Location & Seq

Genomic Coordinates Reverse (-)

5688728 .. 5691813

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG031700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGGCTTGCGGATATGTTTGTGAATTATCGTTGCTCGAATGTGTTCAATACATCTGCTTGCCATGACATAGGCATGAATGCGCTGCTAAAACCAATGATGTCTGTTATAAAACAGTGTTCCAGAGTATCTGCATCCCTTTTGTCAATAGAAAAACGAAGAAATGCTGGCCAACAGAATCCAGAAGAAACCAAAACCATTTCAGAGTTGTGTTTAAATGAGATTGTTGGTTCAGAAGTTGGATATAACTCGGAGGAGATGGAGCCCCCAAGTACTCTCATATGTGATCTGGTGCCATACCAGAAACAATCTCTCTATTGGATGTTGCAATTAGAGATGGGGATTGATGTTGACAGGAGGGCTACTTCAATCTATGCGAACATGCTTCCAGGAACCATACAATTTCCAACTACGCAACAGATGGCAAGACAAGGAATTCTAGCAGATGCAATGACACTTGGGAAGACTGTGATGACAACTGCTCTAATACTTGCAAGACCAAGGAGAGTAAGCTCCAGTATTATTAATATTACAAAGAAGAGGGAGATAGTTTCAGCTACAAGCTTAGCATTCAAACCAAAGGGGGGCACTCTTATTATCTGTCCCTGGTCTTCTTTAAGCCAGTGGAAGGCGGCATTAGCTCCTATGCATCTCAAAAGAAGATTCGTTGTTTACATTGGAAGTTCACTTATGATTCAGCATGGTGAGAACAGCGTTTTCCATCAGGTCAACTGGTATAGAGTGACACTTGATGAAGCTCCTGCCCTTAAAGATCCTTTGGACAAATTAGGTGCTCAGGCTGCTTATACCTTCTCCTCACATTGCCCATGGTGGTTAACAGGAACCCCTCTACAGGTGAAACGTGGAGACGTGTGGCTGAAACGTCGTCTCGAAAGTGACGTCCGCGGTTCTGGTTTGGGGGCGGTGGGGTCGGTTAACAATGGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

316

Amino Acids

35.0

Weight (kDa)

9.24

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	100 - 212	3.7e-12	SNF2-related domain
SNF2-rel_dom	PF00176	220 - 292	9.7e-07	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04330 AT3G23170 AT4G14450
fragaria_vesca	FvH4_4g03100 FvH4_7g33480
malus_domestica	MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica	Prupe.1G034700_v2.0.a1
pyrus_communis	pycom13g18280
rosa_chinensis	RchiOBHm_Chr4g0391391
rosa_laevigata	RLG00000009867
rosa_multiflora	Rmu_sc0007466.1_g000006
rosa_roxburghii	Rroxscaffold_5G00337120
rosa_rugosa	Rorug03G0335800
rosa_samantha	Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana	Rw4G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AatII	GACGTC	1 cut(s)	903
AccB1I	GGYRCC	1 cut(s)	292
AccII	CGCG	1 cut(s)	906
AciI	CCGC	5 cut(s)	11, 632, 904, 906, 923
AclWI	GGATC	1 cut(s)	767
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	900
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	584, 628, 853
AflIII	ACRYGT	1 cut(s)	870
AgsI	TTSAA	3 cut(s)	49, 369, 574
AjiI	CACGTC	1 cut(s)	871
AjnI	CCWGG	2 cut(s)	388, 605
AluBI	AGCT	5 cut(s)	513, 557, 564, 641, 758
AluI	AGCT	5 cut(s)	513, 557, 564, 641, 758
Alw21I	GWGCWC	1 cut(s)	796
Alw26I	GTCTC	2 cut(s)	861, 893
AlwI	GGATC	1 cut(s)	767
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	85, 800
ApoI	RAATTY	1 cut(s)	435
ArsI	GACNNNNNNTTYG	2 cut(s)	885, 917
AseI	ATTAAT	1 cut(s)	525
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	716, 868
BaeGI	GKGCMC	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	470, 603
Bbv12I	GWGCWC	1 cut(s)	796
BbvI	GCAGC	2 cut(s)	72, 787
BccI	CCATC	4 cut(s)	253, 331, 415, 729
BciT130I	CCWGG	2 cut(s)	390, 607
BcoDI	GTCTC	2 cut(s)	861, 893
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	851
BisI	GCNGC	3 cut(s)	86, 633, 801
BlpI	GCTNAGC	1 cut(s)	565
BlsI	GCNGC	3 cut(s)	87, 634, 802
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	390, 607
BmgBI	CACGTC	1 cut(s)	871
BmiI	GGNNCC	4 cut(s)	264, 294, 394, 844
BmrFI	CCNGG	2 cut(s)	390, 607
BmsI	GCATC	3 cut(s)	143, 436, 658
BpiI	GAAGAC	2 cut(s)	470, 603
BpmI	CTGGAG	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	795
Bpu1102I	GCTNAGC	1 cut(s)	565
BsaHI	GRCGYC	1 cut(s)	900
BsaJI	CCNNGG	4 cut(s)	500, 605, 827, 904
Bsc4I	CCNNNNNNNGG	3 cut(s)	584, 628, 853
Bse1I	ACTGG	3 cut(s)	516, 622, 737
Bse3DI	GCAATG	2 cut(s)	456, 820
BseBI	CCWGG	2 cut(s)	390, 607
BseDI	CCNNGG	4 cut(s)	500, 605, 827, 904
BseGI	GGATG	2 cut(s)	134, 327
BseLI	CCNNNNNNNGG	3 cut(s)	584, 628, 853
BseMI	GCAATG	2 cut(s)	456, 820
BseMII	CTCAG	1 cut(s)	809
BseNI	ACTGG	3 cut(s)	516, 622, 737
BseRI	GAGGAG	2 cut(s)	269, 805
BseSI	GKGCMC	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	72, 787
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	796
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	3 cut(s)	584, 628, 853
BsmAI	GTCTC	2 cut(s)	861, 893
BsmBI	CGTCTC	2 cut(s)	861, 893
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	2 cut(s)	85, 569
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	267, 590, 796
Bsp143I	GATC	2 cut(s)	286, 772
Bsp1720I	GCTNAGC	1 cut(s)	565
Bsp19I	CCATGG	1 cut(s)	827
BspACI	CCGC	5 cut(s)	11, 632, 904, 906, 923
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	808
BspFNI	CGCG	1 cut(s)	906
BspLI	GGNNCC	4 cut(s)	264, 294, 394, 844
BspPI	GGATC	1 cut(s)	767
BspT107I	GGYRCC	1 cut(s)	292
BsrDI	GCAATG	2 cut(s)	456, 820
BsrI	ACTGG	3 cut(s)	516, 622, 737
BssECI	CCNNGG	4 cut(s)	500, 605, 827, 904
BssMI	GATC	2 cut(s)	286, 772
BssNI	GRCGYC	1 cut(s)	900
BssT1I	CCWWGG	2 cut(s)	500, 827
Bst2UI	CCWGG	2 cut(s)	390, 607
Bst4CI	ACNGT	2 cut(s)	117, 469
Bst6I	CTCTTC	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	900
BstC8I	GCNNGC	3 cut(s)	9, 61, 169
BstDEI	CTNAG	2 cut(s)	565, 795
BstDSI	CCRYGG	2 cut(s)	827, 904
BstF5I	GGATG	2 cut(s)	134, 327
BstFNI	CGCG	1 cut(s)	906
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	289, 775
BstMAI	GTCTC	2 cut(s)	861, 893
BstMBI	GATC	2 cut(s)	286, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 800
BstNI	CCWGG	2 cut(s)	390, 607
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	388, 605
BstSFI	CTRYAG	1 cut(s)	851
BstSLI	GKGCMC	1 cut(s)	590
BstUI	CGCG	1 cut(s)	906
BstV1I	GCAGC	2 cut(s)	72, 787
BstV2I	GAAGAC	2 cut(s)	470, 603
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	2 cut(s)	827, 904
BtrI	CACGTC	1 cut(s)	871
BtsCI	GGATG	2 cut(s)	134, 327
BtsIMutI	CAGTG	2 cut(s)	122, 629
Cac8I	GCNNGC	3 cut(s)	9, 61, 169
CfoI	GCGC	1 cut(s)	85
Cfr42I	CCGCGG	1 cut(s)	907
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	5 cut(s)	65, 76, 382, 701, 828
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	565, 795
DpnI	GATC	2 cut(s)	288, 774
DpnII	GATC	2 cut(s)	286, 772
DraI	TTTAAA	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco130I	CCWWGG	2 cut(s)	500, 827
Eco24I	GRGCYC	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	388, 605
EcoT14I	CCWWGG	2 cut(s)	500, 827
EcoT22I	ATGCAT	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	500, 827
Esp3I	CGTCTC	2 cut(s)	861, 893
FaeI	CATG	5 cut(s)	68, 79, 385, 704, 831
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	5 cut(s)	64, 75, 381, 700, 827
FauNDI	CATATG	1 cut(s)	281
Fnu4HI	GCNGC	3 cut(s)	86, 633, 801
FokI	GGATG	2 cut(s)	121, 334
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	86, 633, 801
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	3 cut(s)	86, 633, 801
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	1 cut(s)	171
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	900
Hin1II	CATG	5 cut(s)	68, 79, 385, 704, 831
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	4 cut(s)	352, 730, 837, 937
HindII	GTYRAC	4 cut(s)	352, 730, 837, 937
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	3 cut(s)	178, 663, 694
HpaI	GTTAAC	2 cut(s)	837, 937
HphI	GGTGA	2 cut(s)	716, 868
Hpy166II	GTNNAC	6 cut(s)	352, 673, 686, 730, 837, 937
Hpy188I	TCNGA	3 cut(s)	205, 235, 253
Hpy188III	TCNNGA	3 cut(s)	123, 182, 890
Hpy8I	GTNNAC	6 cut(s)	352, 673, 686, 730, 837, 937
Hpy99I	CGWCG	1 cut(s)	888
HpyAV	CCTTC	2 cut(s)	622, 820
HpyCH4III	ACNGT	2 cut(s)	117, 469
HpyCH4IV	ACGT	4 cut(s)	862, 870, 883, 900
HpyCH4V	TGCA	5 cut(s)	134, 328, 449, 494, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 800
HpyF3I	CTNAG	2 cut(s)	565, 795
HpySE526I	ACGT	4 cut(s)	862, 870, 883, 900
Hsp92I	GRCGYC	1 cut(s)	900
Hsp92II	CATG	5 cut(s)	68, 79, 385, 704, 831
HspAI	GCGC	1 cut(s)	83
KspAI	GTTAAC	2 cut(s)	837, 937
KspI	CCGCGG	1 cut(s)	907
Kzo9I	GATC	2 cut(s)	286, 772
LmnI	GCTCC	4 cut(s)	262, 518, 646, 763
Lsp1109I	GCAGC	2 cut(s)	72, 787
LweI	GCATC	3 cut(s)	143, 436, 658
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	4 cut(s)	862, 870, 883, 900
MaeIII	GTNAC	2 cut(s)	742, 896
MalI	GATC	2 cut(s)	288, 774
MboI	GATC	2 cut(s)	286, 772
MboII	GAAGA	6 cut(s)	171, 197, 475, 550, 603, 672
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	3 cut(s)	267, 590, 796
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	5 cut(s)	25, 329, 401, 435, 785
MluNI	TGGCCA	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	220, 431
MnlI	CCTC	5 cut(s)	247, 351, 534, 826, 858
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	6 cut(s)	215, 525, 617, 768, 836, 936
MslI	CAYNNNNRTG	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	906
MspR9I	CCNGG	2 cut(s)	390, 607
Mva1269I	GAATGC	2 cut(s)	85, 569
MvaI	CCWGG	2 cut(s)	390, 607
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	2 cut(s)	638, 800
NcoI	CCATGG	1 cut(s)	827
NdeI	CATATG	1 cut(s)	281
NdeII	GATC	2 cut(s)	286, 772
NlaIII	CATG	5 cut(s)	68, 79, 385, 704, 831
NlaIV	GGNNCC	4 cut(s)	264, 294, 394, 844
NmuCI	GTSAC	2 cut(s)	742, 896
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	897
PctI	GAATGC	2 cut(s)	85, 569
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	178, 663, 694
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	87, 634, 802
PshBI	ATTAAT	1 cut(s)	525
PsiI	TTATAA	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	388, 605
PspGI	CCWGG	2 cut(s)	388, 605
PspN4I	GGNNCC	4 cut(s)	264, 294, 394, 844
PsuI	RGATCY	1 cut(s)	772
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	74
SacII	CCGCGG	1 cut(s)	907
SaqAI	TTAA	6 cut(s)	215, 525, 617, 768, 836, 936
SatI	GCNGC	3 cut(s)	86, 633, 801
Sau3AI	GATC	2 cut(s)	286, 772
ScaI	AGTACT	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	390, 607
SduI	GDGCHC	3 cut(s)	267, 590, 796
SfaNI	GCATC	3 cut(s)	143, 436, 658
SfcI	CTRYAG	1 cut(s)	851
Sfr303I	CCGCGG	1 cut(s)	907
SgrBI	CCGCGG	1 cut(s)	907
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	5 cut(s)	25, 329, 401, 435, 785
SsiI	CCGC	5 cut(s)	11, 632, 904, 906, 923
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	388, 605
StyI	CCWWGG	2 cut(s)	500, 827
TaaI	ACNGT	2 cut(s)	117, 469
TaiI	ACGT	4 cut(s)	865, 873, 886, 903
TaqI	TCGA	2 cut(s)	38, 891
TasI	AATT	5 cut(s)	25, 329, 401, 435, 785
TatI	WGTACW	1 cut(s)	272
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	3 cut(s)	178, 663, 694
Tru1I	TTAA	6 cut(s)	215, 525, 617, 768, 836, 936
Tru9I	TTAA	6 cut(s)	215, 525, 617, 768, 836, 936
TscAI	CASTG	2 cut(s)	122, 629
TseFI	GTSAC	2 cut(s)	742, 896
TseI	GCWGC	2 cut(s)	85, 800
Tsp45I	GTSAC	2 cut(s)	742, 896
TspDTI	ATGAA	2 cut(s)	92, 768
TspRI	CASTG	2 cut(s)	122, 629
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	1 cut(s)	435
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	901
ZrmI	AGTACT	1 cut(s)	274
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.