Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010137

Physical Location & Seq

Genomic Coordinates Reverse (-)

2774752 .. 2776185

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAGACATCCCCAGACCTGGCTCCGGCAACCGCCGCCAGCCCAGCCGTCTCCAGCGCCGCGCTCCTCCCCCGGCCTCCCTCCAAATAAACCCCGTCGCCGACTGGAACGTCGCCATCCCCCTCCTCTCTCCGCTCGTCTCCCCCGATAGCCCCGCCGACGCCAAACCCAGGGAAGACTCCCGCCTCCACCACCAGAAGCTCCAGAAACCCGATCTGCCACGTCATCATGCCGCCGAGGCCGAGAAATCTTCTTCGTCAGCTTCGGCGGCGTCGGCGGTGTTTAAGAAGTGGCAGCACCCAGCGGCACCCTTCTGCTACGAGCCTGCTCCGCCGGTGCGTCCTTTTGTTCCCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.0

Weight (kDa)

10.11

Isoelectric Point (pI)

81.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04330 AT3G23170 AT4G14450
fragaria_vesca	FvH4_4g03100 FvH4_7g33480
malus_domestica	MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica	Prupe.1G034700_v2.0.a1
pyrus_communis	pycom13g18280
rosa_chinensis	RchiOBHm_Chr4g0391391
rosa_laevigata	RLG00000009867
rosa_multiflora	Rmu_sc0007466.1_g000006
rosa_roxburghii	Rroxscaffold_5G00337120
rosa_rugosa	Rorug03G0335800
rosa_samantha	Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana	Rw4G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	136
AccII	CGCG	1 cut(s)	63
AcyI	GRCGYC	2 cut(s)	162, 272
AfiI	CCNNNNNNNGG	3 cut(s)	20, 26, 171
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	19, 170
AluBI	AGCT	2 cut(s)	202, 263
AluI	AGCT	2 cut(s)	202, 263
Alw26I	GTCTC	2 cut(s)	56, 145
AoxI	GGCC	2 cut(s)	75, 240
ApeKI	GCWGC	1 cut(s)	295
AspLEI	GCGC	2 cut(s)	60, 65
AsuC2I	CCSGG	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	21, 172
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	56, 145
BfaI	CTAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	6 cut(s)	37, 61, 234, 270, 296, 306
BlsI	GCNGC	6 cut(s)	38, 62, 235, 271, 297, 307
Bme1390I	CCNGG	3 cut(s)	21, 74, 172
BmgBI	CACGTC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	25, 309
BmrFI	CCNGG	3 cut(s)	21, 74, 172
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	2 cut(s)	38, 188
BpuMI	CCSGG	1 cut(s)	74
BsaHI	GRCGYC	2 cut(s)	162, 272
BsaJI	CCNNGG	4 cut(s)	72, 170, 171, 237
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 26, 171
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	21, 172
BseDI	CCNNGG	4 cut(s)	72, 170, 171, 237
BseGI	GGATG	2 cut(s)	9, 117
BseLI	CCNNNNNNNGG	3 cut(s)	20, 26, 171
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	2 cut(s)	57, 116
BseXI	GCAGC	1 cut(s)	307
BseYI	CCCAGC	2 cut(s)	44, 301
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	77, 242
BshNI	GGYRCC	1 cut(s)	307
BsiSI	CCGG	3 cut(s)	27, 74, 335
BslI	CCNNNNNNNGG	3 cut(s)	20, 26, 171
BsmAI	GTCTC	2 cut(s)	56, 145
BsmBI	CGTCTC	2 cut(s)	56, 145
BsnI	GGCC	2 cut(s)	77, 242
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	2 cut(s)	77, 242
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	25, 309
BspT107I	GGYRCC	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	4 cut(s)	72, 170, 171, 237
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	2 cut(s)	162, 272
Bst2UI	CCWGG	2 cut(s)	21, 172
BstACI	GRCGYC	2 cut(s)	162, 272
BstC8I	GCNNGC	2 cut(s)	41, 327
BstF5I	GGATG	2 cut(s)	9, 117
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	60, 65
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	2 cut(s)	56, 145
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 45, 239, 269, 275, 331
BstNI	CCWGG	2 cut(s)	21, 172
BstSCI	CCNGG	3 cut(s)	19, 72, 170
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	77, 242
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	9, 117
Cac8I	GCNNGC	2 cut(s)	41, 327
CfoI	GCGC	2 cut(s)	60, 65
Cfr10I	RCCGGY	1 cut(s)	334
CseI	GACGC	3 cut(s)	170, 261, 329
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	9 cut(s)	24, 43, 48, 77, 153, 202, 242, 263, 325
CviKI_1	RGCY	9 cut(s)	24, 43, 48, 77, 153, 202, 242, 263, 325
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	321
EcoRII	CCWGG	2 cut(s)	19, 170
Esp3I	CGTCTC	2 cut(s)	56, 145
FaeI	CATG	1 cut(s)	233
FaiI	YATR	1 cut(s)	231
FatI	CATG	1 cut(s)	229
FauI	CCCGC	2 cut(s)	163, 191
Fnu4HI	GCNGC	6 cut(s)	37, 61, 234, 270, 296, 306
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	6 cut(s)	37, 61, 234, 270, 296, 306
FspBI	CTAG	1 cut(s)	358
GlaI	GCGC	2 cut(s)	59, 64
GluI	GCNGC	6 cut(s)	37, 61, 234, 270, 296, 306
GsaI	CCCAGC	2 cut(s)	48, 305
GsuI	CTGGAG	2 cut(s)	38, 188
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	77, 242
HapII	CCGG	3 cut(s)	27, 74, 335
HgaI	GACGC	3 cut(s)	170, 261, 329
HhaI	GCGC	2 cut(s)	60, 65
Hin1I	GRCGYC	2 cut(s)	162, 272
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	2 cut(s)	58, 63
HinP1I	GCGC	2 cut(s)	58, 63
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	3 cut(s)	27, 74, 335
Hpy188III	TCNNGA	1 cut(s)	205
Hpy99I	CGWCG	4 cut(s)	101, 116, 164, 277
HpyAV	CCTTC	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	111, 223
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 45, 239, 269, 275, 331
HpySE526I	ACGT	2 cut(s)	111, 223
Hsp92I	GRCGYC	2 cut(s)	162, 272
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	2 cut(s)	58, 63
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	4 cut(s)	29, 70, 207, 334
Lsp1109I	GCAGC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	358
MaeII	ACGT	2 cut(s)	111, 223
MalI	GATC	1 cut(s)	216
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	1 cut(s)	214
MboII	GAAGA	3 cut(s)	188, 243, 246
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	7 cut(s)	78, 88, 92, 134, 137, 197, 232
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	3 cut(s)	27, 74, 335
MspR9I	CCNGG	3 cut(s)	21, 74, 172
MteI	GCGCNGCGC	1 cut(s)	61
MvaI	CCWGG	2 cut(s)	21, 172
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	6 cut(s)	36, 45, 239, 269, 275, 331
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	25, 309
NmeAIII	GCCGAG	2 cut(s)	262, 268
PasI	CCCWGGG	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PkrI	GCNGC	6 cut(s)	38, 62, 235, 271, 297, 307
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	19, 170
PspFI	CCCAGC	2 cut(s)	44, 301
PspGI	CCWGG	2 cut(s)	19, 170
PspN4I	GGNNCC	2 cut(s)	25, 309
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	6 cut(s)	37, 61, 234, 270, 296, 306
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	3 cut(s)	21, 74, 172
SetI	ASST	5 cut(s)	22, 114, 204, 226, 265
SgrAI	CRCCGGYG	1 cut(s)	334
SspMI	CTAG	1 cut(s)	358
StyD4I	CCNGG	3 cut(s)	19, 72, 170
TaiI	ACGT	2 cut(s)	114, 226
TauI	GCSGC	5 cut(s)	39, 63, 236, 272, 308
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	1 cut(s)	295
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.