Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010137

Physical Location & Seq

Genomic Coordinates Reverse (-)

20487224 .. 20487614

Gene Structure 391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1213100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCAGAAGAATCGCGACCGAGCTCCGGCAACCGACGCCAGCCCAGCGGCCTCCAGAGGCGAGCCCCGCCCCCTTCTTCCTTGCAAATAAACCGCGTCCCCGATTGGAACGTCGCCATCCCCCTCCTCTCCCCTCTCGTCTCCCCCGATCAACCAATCGAGGCCAAATCTCGAGACGACACGCGGCAGCACCAGCAGAAGGAGCTCCCGCGCCATCATCAGCAGGGCGCGGAGGCGGACAAGTCGGCTCAGGTGGCGGTGTTCAAGAAGTGGCAGCACCCGGCGGCTCCGTTTTGCTACGACACGGCTCAGATGGTCCCGCCTTTCGTTCAGTTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.8

Weight (kDa)

9.73

Isoelectric Point (pI)

79.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04330 AT3G23170 AT4G14450
fragaria_vesca	FvH4_4g03100 FvH4_7g33480
malus_domestica	MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica	Prupe.1G034700_v2.0.a1
pyrus_communis	pycom13g18280
rosa_chinensis	RchiOBHm_Chr4g0391391
rosa_laevigata	RLG00000009867
rosa_multiflora	Rmu_sc0007466.1_g000006
rosa_roxburghii	Rroxscaffold_5G00337120
rosa_rugosa	Rorug03G0335800
rosa_samantha	Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana	Rw4G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	16, 96, 184, 211, 230
AcyI	GRCGYC	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	26, 199
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	2 cut(s)	24, 205
AluI	AGCT	2 cut(s)	24, 205
Alw21I	GWGCWC	2 cut(s)	26, 207
Alw26I	GTCTC	2 cut(s)	145, 168
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	2 cut(s)	49, 162
ApeKI	GCWGC	2 cut(s)	187, 274
AspLEI	GCGC	2 cut(s)	213, 230
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	316
BanII	GRGCYC	3 cut(s)	26, 67, 207
Bbv12I	GWGCWC	2 cut(s)	26, 207
BbvI	GCAGC	2 cut(s)	199, 286
BccI	CCATC	3 cut(s)	125, 222, 307
BceAI	ACGGC	1 cut(s)	321
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	145, 168
BisI	GCNGC	5 cut(s)	49, 185, 188, 275, 285
BlsI	GCNGC	5 cut(s)	50, 186, 189, 276, 286
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	288, 318
BmrFI	CCNGG	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 199
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	26, 199
BseMII	CTCAG	2 cut(s)	263, 323
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	199, 286
BseYI	CCCAGC	1 cut(s)	44
Bsh1236I	CGCG	5 cut(s)	16, 96, 184, 211, 230
Bsh1285I	CGRYCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	51, 164
BsiEI	CGRYCG	1 cut(s)	20
BsiHKAI	GWGCWC	2 cut(s)	26, 207
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	27, 281
BslFI	GGGAC	2 cut(s)	83, 302
BslI	CCNNNNNNNGG	2 cut(s)	26, 199
BsmAI	GTCTC	2 cut(s)	145, 168
BsmBI	CGTCTC	2 cut(s)	145, 168
BsmFI	GGGAC	2 cut(s)	83, 302
BsnI	GGCC	2 cut(s)	51, 164
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	26, 67, 207
Bsp143I	GATC	1 cut(s)	148
Bsp68I	TCGCGA	1 cut(s)	16
BspANI	GGCC	2 cut(s)	51, 164
BspCNI	CTCAG	2 cut(s)	262, 322
BspFNI	CGCG	5 cut(s)	16, 96, 184, 211, 230
BspLI	GGNNCC	2 cut(s)	288, 318
BssMI	GATC	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	41, 63
BstDEI	CTNAG	2 cut(s)	249, 309
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	5 cut(s)	16, 96, 184, 211, 230
BstHHI	GCGC	2 cut(s)	213, 230
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	2 cut(s)	145, 168
BstMBI	GATC	1 cut(s)	148
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 45, 67, 193, 202, 254
BstSCI	CCNGG	1 cut(s)	279
BstUI	CGCG	5 cut(s)	16, 96, 184, 211, 230
BstV1I	GCAGC	2 cut(s)	199, 286
BsuRI	GGCC	2 cut(s)	51, 164
BtsCI	GGATG	1 cut(s)	117
BtuMI	TCGCGA	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	41, 63
CfoI	GCGC	2 cut(s)	213, 230
Cfr13I	GGNCC	1 cut(s)	316
CseI	GACGC	2 cut(s)	45, 85
CviJI	RGCY	9 cut(s)	24, 43, 51, 65, 164, 205, 248, 287, 308
CviKI_1	RGCY	9 cut(s)	24, 43, 51, 65, 164, 205, 248, 287, 308
DdeI	CTNAG	2 cut(s)	249, 309
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	251
Ecl136II	GAGCTC	2 cut(s)	24, 205
Eco24I	GRGCYC	3 cut(s)	26, 67, 207
Eco47I	GGWCC	1 cut(s)	316
Eco53kI	GAGCTC	2 cut(s)	24, 205
Eco88I	CYCGRG	1 cut(s)	171
EcoICRI	GAGCTC	2 cut(s)	24, 205
EcoT38I	GRGCYC	3 cut(s)	26, 67, 207
Esp3I	CGTCTC	2 cut(s)	145, 168
FaqI	GGGAC	2 cut(s)	83, 302
FauI	CCCGC	3 cut(s)	75, 216, 327
Fnu4HI	GCNGC	5 cut(s)	49, 185, 188, 275, 285
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	3 cut(s)	26, 67, 207
Fsp4HI	GCNGC	5 cut(s)	49, 185, 188, 275, 285
GlaI	GCGC	2 cut(s)	212, 229
GluI	GCNGC	5 cut(s)	49, 185, 188, 275, 285
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	51, 164
HapII	CCGG	2 cut(s)	27, 281
HgaI	GACGC	2 cut(s)	45, 85
HhaI	GCGC	2 cut(s)	213, 230
Hin1I	GRCGYC	1 cut(s)	37
Hin6I	GCGC	2 cut(s)	211, 228
HinP1I	GCGC	2 cut(s)	211, 228
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	2 cut(s)	27, 281
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	5 cut(s)	15, 55, 171, 173, 265
Hpy99I	CGWCG	2 cut(s)	39, 116
HpyAV	CCTTC	2 cut(s)	84, 193
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 45, 67, 193, 202, 254
HpyF3I	CTNAG	2 cut(s)	249, 309
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	37
HspAI	GCGC	2 cut(s)	211, 228
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	4 cut(s)	29, 202, 210, 292
LpnPI	CCDG	8 cut(s)	40, 53, 58, 68, 206, 209, 236, 294
Lsp1109I	GCAGC	2 cut(s)	199, 286
MaeII	ACGT	1 cut(s)	111
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	20, 69
MhlI	GDGCHC	3 cut(s)	26, 67, 207
MnlI	CCTC	7 cut(s)	51, 62, 134, 137, 144, 154, 226
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	2 cut(s)	27, 281
MspR9I	CCNGG	1 cut(s)	281
MvnI	CGCG	5 cut(s)	16, 96, 184, 211, 230
MwoI	GCNNNNNNNGC	6 cut(s)	36, 45, 67, 193, 202, 254
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	288, 318
NruI	TCGCGA	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	5 cut(s)	50, 186, 189, 276, 286
Psp124BI	GAGCTC	2 cut(s)	26, 207
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	288, 318
PspPI	GGNCC	1 cut(s)	316
RruI	TCGCGA	1 cut(s)	16
SacI	GAGCTC	2 cut(s)	26, 207
SatI	GCNGC	5 cut(s)	49, 185, 188, 275, 285
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	3 cut(s)	26, 67, 207
SetI	ASST	4 cut(s)	26, 114, 207, 255
Sfr274I	CTCGAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	316
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
SstI	GAGCTC	2 cut(s)	26, 207
StyD4I	CCNGG	1 cut(s)	279
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	159, 172
TaqII	GACCGA	1 cut(s)	34
TauI	GCSGC	3 cut(s)	51, 187, 287
TfiI	GAWTC	1 cut(s)	11
TseI	GCWGC	2 cut(s)	187, 274
TspGWI	ACGGA	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	316
XhoI	CTCGAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.