Rh4AG037400

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010137
Physical Location & Seq
Reverse (-)
8004690 .. 8007506
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG037400.1

Sequence Viewer

Length: 543 bp
ATGAGGACTGAAATGATGAGGCTGAAGCCATTGATGGGTTTGAAACAAGTTGGTCAAGGATACAAACGTCATTTCTCAAAGCCCATTGGACTGTTCGTTTTGAAACAAGTTGATCCGAAGAGGAGGGCTACTTCAATCTATGCGAACATGCTTCCAGGAACCATACAATTTCCAACTACGCAACAGATGGCAAGACAAGGAATTCTAGCAGATGCAATGACACTTGGGAAGACTGTGATGACAACTGCTCTAATACTTGCAAGACCAAGGAGAGTAAGCTCCAGTATTATTAATATTACAAAGAAGAGGGAGATAGTTTCAGCTACAAGCTTAGCATTCAAACCAAAGGGGGGCACTCTTATTATCTGTCCTTGGTCTTCTTTAAGCCAGTGGAAGCATGGTGAGAACAGCGTTTTCCATCAGGTCAACTGGTATAGAGTGATACTTGATGAAGCTCCTGCCCTTAAAGATCCTTTGGACAGATTAGGTGCTCAGGCTGCTTATAGCCTTATACCTTCTCCTCACATTGCCGATGGTGATTAA

Protein Analysis

180

Amino Acids

20.04

Weight (kDa)

10.35

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 61 - 133 2.6e-09 SNF2-related domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0010137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04330 AT3G23170 AT4G14450
fragaria_vesca FvH4_4g03100 FvH4_7g33480
malus_domestica MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica Prupe.1G034700_v2.0.a1
pyrus_communis pycom13g18280
rosa_chinensis RchiOBHm_Chr4g0391391
rosa_laevigata RLG00000009867
rosa_multiflora Rmu_sc0007466.1_g000006
rosa_roxburghii Rroxscaffold_5G00337120
rosa_rugosa Rorug03G0335800
rosa_samantha Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana Rw4G002900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 107, 464
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 35, 350
AgsI TTSAA 4 cut(s) 43, 103, 135, 340
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 4 cut(s) 279, 323, 330, 455
AluI AGCT 4 cut(s) 279, 323, 330, 455
Alw21I GWGCWC 1 cut(s) 493
AlwI GGATC 2 cut(s) 107, 464
ApeKI GCWGC 1 cut(s) 497
ApoI RAATTY 1 cut(s) 201
AseI ATTAAT 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 52, 85
BbsI GAAGAC 2 cut(s) 236, 369
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 484
BccI CCATC 4 cut(s) 28, 181, 426, 527
BciT130I CCWGG 1 cut(s) 156
BciVI GTATCC 1 cut(s) 53
BfaI CTAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 53
BisI GCNGC 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 2 cut(s) 236, 369
BpmI CTGGAG 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 492
Bpu1102I GCTNAGC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 266, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 350
Bse1I ACTGG 3 cut(s) 282, 388, 434
Bse3DI GCAATG 2 cut(s) 222, 525
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 266, 371
BseLI CCNNNNNNNGG 2 cut(s) 35, 350
BseMI GCAATG 2 cut(s) 222, 525
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 3 cut(s) 282, 388, 434
BseRI GAGGAG 2 cut(s) 136, 510
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 493
BslI CCNNNNNNNGG 2 cut(s) 35, 350
BsmI GAATGC 1 cut(s) 335
Bsp1286I GDGCHC 2 cut(s) 356, 493
Bsp143I GATC 2 cut(s) 112, 469
Bsp1720I GCTNAGC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 2 cut(s) 107, 464
BsrDI GCAATG 2 cut(s) 222, 525
BsrI ACTGG 3 cut(s) 282, 388, 434
BssECI CCNNGG 2 cut(s) 266, 371
BssMI GATC 2 cut(s) 112, 469
BssT1I CCWWGG 2 cut(s) 266, 371
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 93, 235
Bst6I CTCTTC 2 cut(s) 113, 299
BstDEI CTNAG 2 cut(s) 331, 492
BstKTI GATC 2 cut(s) 115, 472
BstMBI GATC 2 cut(s) 112, 469
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 484
BstV2I GAAGAC 2 cut(s) 236, 369
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuI GTATCC 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 395
CviAII CATG 2 cut(s) 148, 398
DdeI CTNAG 2 cut(s) 331, 492
DpnI GATC 2 cut(s) 114, 471
DpnII GATC 2 cut(s) 112, 469
Eam1104I CTCTTC 2 cut(s) 113, 299
EarI CTCTTC 2 cut(s) 113, 299
Eco130I CCWWGG 2 cut(s) 266, 371
Eco57I CTGAAG 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 266, 371
ErhI CCWWGG 2 cut(s) 266, 371
FaeI CATG 2 cut(s) 151, 401
FaiI YATR 7 cut(s) 141, 149, 164, 399, 435, 504, 512
FatI CATG 2 cut(s) 147, 397
Fnu4HI GCNGC 1 cut(s) 498
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 498
GsuI CTGGAG 1 cut(s) 265
Hin1II CATG 2 cut(s) 151, 401
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 328
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 1 cut(s) 525
HpyCH4III ACNGT 2 cut(s) 93, 235
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 215, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 2 cut(s) 331, 492
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 2 cut(s) 151, 401
Kzo9I GATC 2 cut(s) 112, 469
LmnI GCTCC 2 cut(s) 284, 460
LpnPI CCDG 8 cut(s) 141, 168, 295, 401, 407, 415, 471, 479
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 206
MaeII ACGT 1 cut(s) 67
MalI GATC 2 cut(s) 114, 471
MboI GATC 2 cut(s) 112, 469
MboII GAAGA 4 cut(s) 130, 241, 316, 369
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 356, 493
MluCI AATT 2 cut(s) 167, 201
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 5 cut(s) 12, 114, 117, 300, 531
MseI TTAA 4 cut(s) 291, 383, 465, 541
MspR9I CCNGG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 2 cut(s) 112, 469
NlaIII CATG 2 cut(s) 151, 401
NlaIV GGNNCC 1 cut(s) 160
NspI RCATGY 1 cut(s) 151
PctI GAATGC 1 cut(s) 335
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 1 cut(s) 499
PshBI ATTAAT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 160
PsuI RGATCY 1 cut(s) 469
SaqAI TTAA 4 cut(s) 291, 383, 465, 541
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 2 cut(s) 112, 469
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 2 cut(s) 356, 493
SetI ASST 8 cut(s) 70, 281, 325, 332, 426, 457, 490, 517
SfaNI GCATC 1 cut(s) 202
Sse9I AATT 2 cut(s) 167, 201
SspI AATATT 1 cut(s) 295
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 2 cut(s) 266, 371
TaaI ACNGT 2 cut(s) 93, 235
TaiI ACGT 1 cut(s) 70
TasI AATT 2 cut(s) 167, 201
Tru1I TTAA 4 cut(s) 291, 383, 465, 541
Tru9I TTAA 4 cut(s) 291, 383, 465, 541
TscAI CASTG 1 cut(s) 395
TseI GCWGC 1 cut(s) 497
TspDTI ATGAA 1 cut(s) 465
TspRI CASTG 1 cut(s) 395
VspI ATTAAT 1 cut(s) 291
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.