Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010137

Physical Location & Seq

Genomic Coordinates Reverse (-)

2434293 .. 2435128

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCAGACGCACCCAGACCAAGCTCCACAATCAACCGCCGCCAGCCCAGCCGCCTCCAGCGGCGCGCCCCGCCCCCTTCTTCCTTACAAATAAATCGCGTCCCTGATTGGAACATCGCGATCCCCCTCCTCTCTCCTCTCGTCTCCCCCGATTGCCCTATAGACACCACCAAATCCCGAGACCAGCACCAGCAGAAGGAGATGCCACGTCATCATCAGGGGGCGGAGGCCGAGAAATCGGCGCCGGCGATGGTATTCAAGAAGTGGCAGCATCCGGCGGCGCCCTTCTGCTACGAGCCGGCTCCGTTTGTCTCGGCTTTTGTTCCGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.36

Weight (kDa)

9.77

Isoelectric Point (pI)

87.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04330 AT3G23170 AT4G14450
fragaria_vesca	FvH4_4g03100 FvH4_7g33480
malus_domestica	MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica	Prupe.1G034700_v2.0.a1
pyrus_communis	pycom13g18280
rosa_chinensis	RchiOBHm_Chr4g0391391
rosa_laevigata	RLG00000009867
rosa_multiflora	Rmu_sc0007466.1_g000006
rosa_roxburghii	Rroxscaffold_5G00337120
rosa_rugosa	Rorug03G0335800
rosa_samantha	Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana	Rw4G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	241, 280
AccII	CGCG	3 cut(s)	66, 99, 119
AciI	CCGC	7 cut(s)	37, 40, 52, 61, 71, 224, 278
AclWI	GGATC	1 cut(s)	115
AcyI	GRCGYC	2 cut(s)	242, 281
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	209
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw26I	GTCTC	3 cut(s)	148, 174, 316
AlwI	GGATC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	268
AscI	GGCGCGCC	1 cut(s)	64
AspLEI	GCGC	4 cut(s)	66, 68, 244, 283
AvaI	CYCGRG	1 cut(s)	177
BanI	GGYRCC	2 cut(s)	241, 280
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	148, 174, 316
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	2 cut(s)	245, 284
BisI	GCNGC	5 cut(s)	40, 52, 62, 269, 279
BlsI	GCNGC	5 cut(s)	41, 53, 63, 270, 280
BmeT110I	CYCGRG	1 cut(s)	177
BmgBI	CACGTC	1 cut(s)	209
BmiI	GGNNCC	3 cut(s)	243, 282, 303
BmsI	GCATC	2 cut(s)	192, 280
BpmI	CTGGAG	1 cut(s)	41
BsaHI	GRCGYC	2 cut(s)	242, 281
BsaI	GGTCTC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	2 cut(s)	244, 298
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	196
BsePI	GCGCGC	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	119, 126
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	47
Bsh1236I	CGCG	3 cut(s)	66, 99, 119
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	2 cut(s)	241, 280
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	4 cut(s)	245, 275, 299, 326
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	3 cut(s)	148, 174, 316
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	120
Bsp68I	TCGCGA	1 cut(s)	119
BspACI	CCGC	7 cut(s)	37, 40, 52, 61, 71, 224, 278
BspANI	GGCC	1 cut(s)	230
BspFNI	CGCG	3 cut(s)	66, 99, 119
BspLI	GGNNCC	3 cut(s)	243, 282, 303
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	2 cut(s)	241, 280
BspTNI	GGTCTC	1 cut(s)	174
BsrFI	RCCGGY	2 cut(s)	244, 298
BssAI	RCCGGY	2 cut(s)	244, 298
BssHII	GCGCGC	1 cut(s)	64
BssMI	GATC	1 cut(s)	120
BssNI	GRCGYC	2 cut(s)	242, 281
BstACI	GRCGYC	2 cut(s)	242, 281
BstC8I	GCNNGC	4 cut(s)	44, 66, 246, 300
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	3 cut(s)	66, 99, 119
BstH2I	RGCGCY	2 cut(s)	245, 284
BstHHI	GCGC	4 cut(s)	66, 68, 244, 283
BstKTI	GATC	1 cut(s)	123
BstMAI	GTCTC	3 cut(s)	148, 174, 316
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 70
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	3 cut(s)	66, 99, 119
BstV1I	GCAGC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	230
BtgZI	GCGATG	2 cut(s)	100, 263
BtrI	CACGTC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	271
BtuMI	TCGCGA	1 cut(s)	119
Cac8I	GCNNGC	4 cut(s)	44, 66, 246, 300
CfoI	GCGC	4 cut(s)	66, 68, 244, 283
Cfr10I	RCCGGY	2 cut(s)	244, 298
CseI	GACGC	2 cut(s)	17, 88
CviJI	RGCY	7 cut(s)	24, 46, 51, 230, 298, 302, 317
CviKI_1	RGCY	7 cut(s)	24, 46, 51, 230, 298, 302, 317
DinI	GGCGCC	2 cut(s)	243, 282
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	177
EgeI	GGCGCC	2 cut(s)	243, 282
EheI	GGCGCC	2 cut(s)	243, 282
Esp3I	CGTCTC	1 cut(s)	148
FaiI	YATR	1 cut(s)	161
FaqI	GGGAC	1 cut(s)	86
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	40, 52, 62, 269, 279
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	40, 52, 62, 269, 279
GlaI	GCGC	4 cut(s)	65, 67, 243, 282
GluI	GCNGC	5 cut(s)	40, 52, 62, 269, 279
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	2 cut(s)	245, 284
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	4 cut(s)	245, 275, 299, 326
HgaI	GACGC	2 cut(s)	17, 88
HhaI	GCGC	4 cut(s)	66, 68, 244, 283
Hin1I	GRCGYC	2 cut(s)	242, 281
Hin6I	GCGC	4 cut(s)	64, 66, 242, 281
HinP1I	GCGC	4 cut(s)	64, 66, 242, 281
HpaII	CCGG	4 cut(s)	245, 275, 299, 326
Hpy188III	TCNNGA	3 cut(s)	118, 177, 259
HpyAV	CCTTC	3 cut(s)	87, 190, 295
HpyCH4IV	ACGT	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 70
HpySE526I	ACGT	1 cut(s)	208
Hsp92I	GRCGYC	2 cut(s)	242, 281
HspAI	GCGC	4 cut(s)	64, 66, 242, 281
KasI	GGCGCC	2 cut(s)	241, 280
KroI	GCCGGC	2 cut(s)	244, 298
KroNI	GCCGGC	2 cut(s)	246, 300
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	29, 307
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	192, 280
MaeII	ACGT	1 cut(s)	208
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	1 cut(s)	72
Mly113I	GGCGCC	2 cut(s)	242, 281
MnlI	CCTC	5 cut(s)	65, 137, 140, 147, 220
MreI	CGCCGGCG	1 cut(s)	244
MroNI	GCCGGC	2 cut(s)	244, 298
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	4 cut(s)	245, 275, 299, 326
MvnI	CGCG	3 cut(s)	66, 99, 119
MwoI	GCNNNNNNNGC	2 cut(s)	48, 70
NaeI	GCCGGC	2 cut(s)	246, 300
NarI	GGCGCC	2 cut(s)	242, 281
NdeII	GATC	1 cut(s)	120
NgoMIV	GCCGGC	2 cut(s)	244, 298
NlaIV	GGNNCC	3 cut(s)	243, 282, 303
NmeAIII	GCCGAG	2 cut(s)	256, 293
NruI	TCGCGA	1 cut(s)	119
PalAI	GGCGCGCC	1 cut(s)	64
PauI	GCGCGC	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 245
PdiI	GCCGGC	2 cut(s)	246, 300
PkrI	GCNGC	5 cut(s)	41, 53, 63, 270, 280
PluTI	GGCGCC	2 cut(s)	245, 284
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	243, 282, 303
PteI	GCGCGC	1 cut(s)	64
RruI	TCGCGA	1 cut(s)	119
SatI	GCNGC	5 cut(s)	40, 52, 62, 269, 279
Sau3AI	GATC	1 cut(s)	120
SetI	ASST	2 cut(s)	26, 211
SfaNI	GCATC	2 cut(s)	192, 280
SfcI	CTRYAG	1 cut(s)	159
SfoI	GGCGCC	2 cut(s)	243, 282
SgrAI	CRCCGGYG	1 cut(s)	244
SgsI	GGCGCGCC	1 cut(s)	64
SsiI	CCGC	7 cut(s)	37, 40, 52, 61, 71, 224, 278
SspDI	GGCGCC	2 cut(s)	241, 280
TaiI	ACGT	1 cut(s)	211
TauI	GCSGC	4 cut(s)	42, 54, 64, 281
TseI	GCWGC	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.