Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010137

Physical Location & Seq

Genomic Coordinates Reverse (-)

19579571 .. 19579906

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1210200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCAGAAGCACCGCGACCGAGGTCCGGCAACCGCCGCCAGCTCAGCCGCCTCCAGAGGCGAGCCCCGCCCCCGTCTTCCCTTCAAATAAACCGCGTCCCCGATTGGAACGTCGCCATCCCCCTTCTCTCCCCTCTTGTCTCCCCCGATCAACCGATCGAGGCCAAATCCCGTGACGACTCGCGGCACCAGCAGAAGGAGCTCCCGCGCCACCATCATCAGGGCGCGGAGGCTGACAAGTCGGCGCAGGCGGCGGTATTCAAGAAGTGGCAGCACCCTGCGGCTCCGTTTTGCTACGAGCCGCCTCAGATGGCCCGGCCTTTCGTTCCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.61

Weight (kDa)

10.53

Isoelectric Point (pI)

84.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04330 AT3G23170 AT4G14450
fragaria_vesca	FvH4_4g03100 FvH4_7g33480
malus_domestica	MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica	Prupe.1G034700_v2.0.a1
pyrus_communis	pycom13g18280
rosa_chinensis	RchiOBHm_Chr4g0391391
rosa_laevigata	RLG00000009867
rosa_multiflora	Rmu_sc0007466.1_g000006
rosa_roxburghii	Rroxscaffold_5G00337120
rosa_rugosa	Rorug03G0335800
rosa_samantha	Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana	Rw4G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	186
AccII	CGCG	5 cut(s)	16, 96, 184, 208, 227
AfiI	CCNNNNNNNGG	3 cut(s)	26, 196, 220
AgsI	TTSAA	2 cut(s)	86, 262
AluBI	AGCT	2 cut(s)	43, 202
AluI	AGCT	2 cut(s)	43, 202
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	3 cut(s)	162, 312, 317
ApeKI	GCWGC	1 cut(s)	271
AspLEI	GCGC	3 cut(s)	210, 227, 247
AspS9I	GGNCC	2 cut(s)	24, 313
AsuC2I	CCSGG	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	2 cut(s)	67, 204
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	3 cut(s)	125, 222, 304
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	145
BisI	GCNGC	7 cut(s)	37, 49, 185, 252, 272, 282, 302
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	7 cut(s)	38, 50, 186, 253, 273, 283, 303
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 313
BmiI	GGNNCC	2 cut(s)	188, 285
BmrFI	CCNGG	1 cut(s)	316
BoxI	GACNNNNGTC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 196, 220
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	26, 196, 220
BseMII	CTCAG	2 cut(s)	58, 320
BseXI	GCAGC	1 cut(s)	283
Bsh1236I	CGCG	5 cut(s)	16, 96, 184, 208, 227
Bsh1285I	CGRYCG	2 cut(s)	20, 159
BshFI	GGCC	3 cut(s)	164, 314, 319
BshNI	GGYRCC	1 cut(s)	186
BsiEI	CGRYCG	2 cut(s)	20, 159
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	27, 316
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	26, 196, 220
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	164, 314, 319
Bsp1286I	GDGCHC	2 cut(s)	67, 204
Bsp143I	GATC	2 cut(s)	148, 156
Bsp1720I	GCTNAGC	1 cut(s)	44
BspANI	GGCC	3 cut(s)	164, 314, 319
BspCNI	CTCAG	2 cut(s)	57, 319
BspFNI	CGCG	5 cut(s)	16, 96, 184, 208, 227
BspLI	GGNNCC	2 cut(s)	188, 285
BspT107I	GGYRCC	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	148, 156
BstC8I	GCNNGC	3 cut(s)	41, 63, 249
BstDEI	CTNAG	2 cut(s)	44, 306
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	5 cut(s)	16, 96, 184, 208, 227
BstHHI	GCGC	3 cut(s)	210, 227, 247
BstKTI	GATC	2 cut(s)	151, 159
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	148, 156
BstMCI	CGRYCG	2 cut(s)	20, 159
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 45, 67, 190, 199, 251
BstPAI	GACNNNNGTC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	314
BstUI	CGCG	5 cut(s)	16, 96, 184, 208, 227
BstV1I	GCAGC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	164, 314, 319
BtsCI	GGATG	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	41, 63, 249
CfoI	GCGC	3 cut(s)	210, 227, 247
Cfr13I	GGNCC	2 cut(s)	24, 313
CseI	GACGC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	44, 306
DpnI	GATC	2 cut(s)	150, 158
DpnII	GATC	2 cut(s)	148, 156
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	67, 204
Eco47I	GGWCC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	67, 204
FaqI	GGGAC	1 cut(s)	83
FauI	CCCGC	2 cut(s)	75, 213
Fnu4HI	GCNGC	7 cut(s)	37, 49, 185, 252, 272, 282, 302
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	2 cut(s)	67, 204
Fsp4HI	GCNGC	7 cut(s)	37, 49, 185, 252, 272, 282, 302
GlaI	GCGC	3 cut(s)	209, 226, 246
GluI	GCNGC	7 cut(s)	37, 49, 185, 252, 272, 282, 302
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	164, 314, 319
HapII	CCGG	2 cut(s)	27, 316
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	3 cut(s)	210, 227, 247
Hin6I	GCGC	3 cut(s)	208, 225, 245
HinP1I	GCGC	3 cut(s)	208, 225, 245
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	27, 316
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	55, 262
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	92, 134, 190
HpyCH4IV	ACGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 45, 67, 190, 199, 251
HpyF3I	CTNAG	2 cut(s)	44, 306
HpySE526I	ACGT	1 cut(s)	111
HspAI	GCGC	3 cut(s)	208, 225, 245
Kzo9I	GATC	2 cut(s)	148, 156
LmnI	GCTCC	3 cut(s)	199, 207, 289
LpnPI	CCDG	8 cut(s)	40, 53, 68, 203, 206, 233, 291, 329
Lsp1109I	GCAGC	1 cut(s)	283
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	150, 158
MboI	GATC	2 cut(s)	148, 156
MboII	GAAGA	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	67, 204
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	7 cut(s)	15, 51, 62, 144, 154, 223, 315
MspI	CCGG	2 cut(s)	27, 316
MspR9I	CCNGG	1 cut(s)	316
MvnI	CGCG	5 cut(s)	16, 96, 184, 208, 227
MwoI	GCNNNNNNNGC	6 cut(s)	36, 45, 67, 190, 199, 251
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	148, 156
NlaIV	GGNNCC	2 cut(s)	188, 285
NmuCI	GTSAC	1 cut(s)	173
PkrI	GCNGC	7 cut(s)	38, 50, 186, 253, 273, 283, 303
Ple19I	CGATCG	1 cut(s)	159
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PshAI	GACNNNNGTC	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	188, 285
PspPI	GGNCC	2 cut(s)	24, 313
PvuI	CGATCG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	204
SatI	GCNGC	7 cut(s)	37, 49, 185, 252, 272, 282, 302
Sau3AI	GATC	2 cut(s)	148, 156
Sau96I	GGNCC	2 cut(s)	24, 313
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	2 cut(s)	67, 204
SetI	ASST	4 cut(s)	26, 45, 114, 204
SinI	GGWCC	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	314
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	159
TaqII	GACCGA	1 cut(s)	34
TauI	GCSGC	6 cut(s)	39, 51, 187, 254, 284, 304
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.