Rmu_sc0007466.1_g000006

protein At4g14450, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007466.1
OG0010137
Physical Location & Seq
Forward (+)
26666 .. 27025
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007466.1_g000006.1.cds

Sequence Viewer

Length: 360 bp
atggcagacatccccagacctagctccggcccccgccgccagcccagccgtctccagcgccgcgctcctcccccggcctccctccaaataaaccccgtcgccgactggaacgtcgccatccccctcctctctcctctcgtctcccccgatcgtccggccgactccaaaccccgtgacgacccccgcctccaccaccagaaactccagaaacccgacctgccacgtcatcaggcctcggaggccgataaatcctcttcgtcgtcgtcgtcggcggcggcggtgtttaagaagtggcagcacccggcggcccccttctgctacgagcctgctccgccggtccggccttttgttcccgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.1

Weight (kDa)

10.34

Isoelectric Point (pI)

82.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04330 AT3G23170 AT4G14450
fragaria_vesca FvH4_4g03100 FvH4_7g33480
malus_domestica MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica Prupe.1G034700_v2.0.a1
pyrus_communis pycom13g18280
rosa_chinensis RchiOBHm_Chr4g0391391
rosa_laevigata RLG00000009867
rosa_multiflora Rmu_sc0007466.1_g000006
rosa_roxburghii Rroxscaffold_5G00337120
rosa_rugosa Rorug03G0335800
rosa_samantha Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana Rw4G002900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 225
AccII CGCG 1 cut(s) 63
AciI CCGC 9 cut(s) 34, 37, 61, 184, 272, 275, 278, 305, 332
AcoI YGGCCR 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 26
AjiI CACGTC 1 cut(s) 224
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 56, 145
AoxI GGCC 7 cut(s) 28, 75, 156, 231, 240, 306, 341
ApeKI GCWGC 1 cut(s) 295
AspLEI GCGC 2 cut(s) 60, 65
AspS9I GGNCC 3 cut(s) 29, 307, 337
AsuC2I CCSGG 2 cut(s) 74, 302
AvaII GGWCC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 33
BcnI CCSGG 2 cut(s) 74, 302
BcoDI GTCTC 2 cut(s) 56, 145
BfaI CTAG 2 cut(s) 21, 358
BfoI RGCGCY 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 225
BglI GCCNNNNNGGC 2 cut(s) 239, 340
BisI GCNGC 6 cut(s) 37, 61, 273, 276, 296, 306
BlsI GCNGC 6 cut(s) 38, 62, 274, 277, 297, 307
Bme1390I CCNGG 2 cut(s) 74, 302
Bme18I GGWCC 1 cut(s) 337
BmgBI CACGTC 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 29, 307, 337
BmiI GGNNCC 2 cut(s) 31, 309
BmrFI CCNGG 2 cut(s) 74, 302
BpmI CTGGAG 2 cut(s) 38, 188
BpuMI CCSGG 2 cut(s) 74, 302
BsaJI CCNNGG 2 cut(s) 72, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 72, 234
BseGI GGATG 2 cut(s) 9, 117
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 3 cut(s) 57, 116, 123
BseX3I CGGCCG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 307
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 63
Bsh1285I CGRYCG 2 cut(s) 151, 159
BshFI GGCC 7 cut(s) 30, 77, 158, 233, 242, 308, 343
BsiEI CGRYCG 2 cut(s) 151, 159
BsiSI CCGG 6 cut(s) 27, 74, 155, 302, 335, 340
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 2 cut(s) 56, 145
BsmBI CGTCTC 2 cut(s) 56, 145
BsnI GGCC 7 cut(s) 30, 77, 158, 233, 242, 308, 343
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 9 cut(s) 34, 37, 61, 184, 272, 275, 278, 305, 332
BspANI GGCC 7 cut(s) 30, 77, 158, 233, 242, 308, 343
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 31, 309
BspMI ACCTGC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 2 cut(s) 72, 234
BssMI GATC 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 41, 327
BstF5I GGATG 2 cut(s) 9, 117
BstFNI CGCG 1 cut(s) 63
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 2 cut(s) 60, 65
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 2 cut(s) 56, 145
BstMBI GATC 1 cut(s) 148
BstMCI CGRYCG 2 cut(s) 151, 159
BstMWI GCNNNNNNNGC 5 cut(s) 36, 45, 239, 331, 340
BstSCI CCNGG 2 cut(s) 72, 300
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 307
BstZI CGGCCG 1 cut(s) 156
BsuRI GGCC 7 cut(s) 30, 77, 158, 233, 242, 308, 343
BtrI CACGTC 1 cut(s) 224
BtsCI GGATG 2 cut(s) 9, 117
BveI ACCTGC 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 41, 327
CfoI GCGC 2 cut(s) 60, 65
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 3 cut(s) 29, 307, 337
CpoI CGGWCCG 1 cut(s) 337
CspI CGGWCCG 1 cut(s) 337
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 156
EagI CGGCCG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 321
EclXI CGGCCG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 337
Eco52I CGGCCG 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 56, 145
FauI CCCGC 2 cut(s) 41, 191
Fnu4HI GCNGC 6 cut(s) 37, 61, 273, 276, 296, 306
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 6 cut(s) 37, 61, 273, 276, 296, 306
FspBI CTAG 2 cut(s) 21, 358
GlaI GCGC 2 cut(s) 59, 64
GluI GCNGC 6 cut(s) 37, 61, 273, 276, 296, 306
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 2 cut(s) 38, 188
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 7 cut(s) 30, 77, 158, 233, 242, 308, 343
HapII CCGG 6 cut(s) 27, 74, 155, 302, 335, 340
HhaI GCGC 2 cut(s) 60, 65
Hin6I GCGC 2 cut(s) 58, 63
HinP1I GCGC 2 cut(s) 58, 63
HinfI GANTC 1 cut(s) 161
HpaII CCGG 6 cut(s) 27, 74, 155, 302, 335, 340
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 205
Hpy99I CGWCG 6 cut(s) 101, 116, 262, 265, 268, 271
HpyAV CCTTC 1 cut(s) 322
HpyCH4IV ACGT 2 cut(s) 111, 223
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 45, 239, 331, 340
HpySE526I ACGT 2 cut(s) 111, 223
HspAI GCGC 2 cut(s) 58, 63
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 3 cut(s) 29, 70, 334
Lsp1109I GCAGC 1 cut(s) 307
MaeI CTAG 2 cut(s) 21, 358
MaeII ACGT 2 cut(s) 111, 223
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 246
MlyI GAGTC 1 cut(s) 155
MseI TTAA 1 cut(s) 285
MspI CCGG 6 cut(s) 27, 74, 155, 302, 335, 340
MspR9I CCNGG 2 cut(s) 74, 302
MteI GCGCNGCGC 1 cut(s) 61
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 5 cut(s) 36, 45, 239, 331, 340
NciI CCSGG 2 cut(s) 74, 302
NdeII GATC 1 cut(s) 148
NlaIV GGNNCC 2 cut(s) 31, 309
NmuCI GTSAC 1 cut(s) 173
PceI AGGCCT 1 cut(s) 233
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 263
PkrI GCNGC 6 cut(s) 38, 62, 274, 277, 297, 307
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 31, 309
PspPI GGNCC 3 cut(s) 29, 307, 337
PvuI CGATCG 1 cut(s) 151
Rsr2I CGGWCCG 1 cut(s) 337
RsrII CGGWCCG 1 cut(s) 337
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 6 cut(s) 37, 61, 273, 276, 296, 306
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 3 cut(s) 29, 307, 337
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 74, 302
SetI ASST 5 cut(s) 22, 26, 114, 219, 226
SfiI GGCCNNNNNGGCC 1 cut(s) 239
SinI GGWCC 1 cut(s) 337
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 9 cut(s) 34, 37, 61, 184, 272, 275, 278, 305, 332
SspMI CTAG 2 cut(s) 21, 358
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 72, 300
TaiI ACGT 2 cut(s) 114, 226
TauI GCSGC 5 cut(s) 39, 63, 275, 278, 308
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 337
XspI CTAG 2 cut(s) 21, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.