Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010137

Physical Location & Seq

Genomic Coordinates Reverse (-)

5889251 .. 5889821

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG034900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAGACATCCCCAGACCTACCTCCGGCCCCCGCCGCCAGCCCAGCCGTCTCCAGCGCCGCGCTCCTCCTCCGGCCTCCCTCCAAATAAACCCCGTCGCCGACTGGAACGTCGCCATCCCCCTCCTCTCTCCTCTCGTCTCCCCCGATCGTCCGGCCGACTCCAAACCCCGTGACGACCCCCGCCTCCACCACCAGAAACTCCAGAAACCCGACCTGCCACGTCATCAGGCCTCGGAGGCCGAGAAATCATCCTCGTCGTCGGCGGCGGCGGCGGTGTTTAAGAAGTGGCAGCACCCGGCGGCCCCCTTCTGCTACGAGCCTGCTCCGCCGGTCCGGCCTTTTGTTCCCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.02

Weight (kDa)

10.34

Isoelectric Point (pI)

77.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04330 AT3G23170 AT4G14450
fragaria_vesca	FvH4_4g03100 FvH4_7g33480
malus_domestica	MD13G1210200.v1.1 MD16G1213100.v1.1
prunus_persica	Prupe.1G034700_v2.0.a1
pyrus_communis	pycom13g18280
rosa_chinensis	RchiOBHm_Chr4g0391391
rosa_laevigata	RLG00000009867
rosa_multiflora	Rmu_sc0007466.1_g000006
rosa_roxburghii	Rroxscaffold_5G00337120
rosa_rugosa	Rorug03G0335800
rosa_samantha	Rh4AG037400 Rh4BG031600 Rh4BG031700 Rh4CG040300 Rh4CG040400 Rh4DG034900
rosa_wichuraiana	Rw4G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	225
AccII	CGCG	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	26
AjiI	CACGTC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	56, 145
AoxI	GGCC	7 cut(s)	28, 75, 156, 231, 240, 303, 338
ApeKI	GCWGC	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	60, 65
AspS9I	GGNCC	3 cut(s)	29, 304, 334
AsuC2I	CCSGG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	56, 145
BfaI	CTAG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	225
BglI	GCCNNNNNGGC	2 cut(s)	239, 337
BisI	GCNGC	7 cut(s)	37, 61, 267, 270, 273, 293, 303
BlsI	GCNGC	7 cut(s)	38, 62, 268, 271, 274, 294, 304
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	334
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	3 cut(s)	29, 304, 334
BmiI	GGNNCC	2 cut(s)	31, 306
BmrFI	CCNGG	1 cut(s)	299
BpmI	CTGGAG	2 cut(s)	38, 188
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	3 cut(s)	9, 117, 251
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	4 cut(s)	57, 60, 116, 123
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	304
BseYI	CCCAGC	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	2 cut(s)	151, 159
BshFI	GGCC	7 cut(s)	30, 77, 158, 233, 242, 305, 340
BsiEI	CGRYCG	2 cut(s)	151, 159
BsiSI	CCGG	6 cut(s)	27, 74, 155, 299, 332, 337
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	56, 145
BsmBI	CGTCTC	2 cut(s)	56, 145
BsnI	GGCC	7 cut(s)	30, 77, 158, 233, 242, 305, 340
Bsp143I	GATC	1 cut(s)	148
BspANI	GGCC	7 cut(s)	30, 77, 158, 233, 242, 305, 340
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	31, 306
BspMI	ACCTGC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	41, 324
BstF5I	GGATG	3 cut(s)	9, 117, 251
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	60, 65
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	2 cut(s)	56, 145
BstMBI	GATC	1 cut(s)	148
BstMCI	CGRYCG	2 cut(s)	151, 159
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 45, 239, 272, 328, 337
BstSCI	CCNGG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	304
BstZI	CGGCCG	1 cut(s)	156
BsuRI	GGCC	7 cut(s)	30, 77, 158, 233, 242, 305, 340
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	3 cut(s)	9, 117, 251
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	41, 324
CfoI	GCGC	2 cut(s)	60, 65
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	29, 304, 334
CpoI	CGGWCCG	1 cut(s)	334
CspI	CGGWCCG	1 cut(s)	334
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	334
Eco52I	CGGCCG	1 cut(s)	156
Esp3I	CGTCTC	2 cut(s)	56, 145
FauI	CCCGC	2 cut(s)	41, 191
Fnu4HI	GCNGC	7 cut(s)	37, 61, 267, 270, 273, 293, 303
FokI	GGATG	2 cut(s)	104, 238
Fsp4HI	GCNGC	7 cut(s)	37, 61, 267, 270, 273, 293, 303
FspBI	CTAG	1 cut(s)	355
GlaI	GCGC	2 cut(s)	59, 64
GluI	GCNGC	7 cut(s)	37, 61, 267, 270, 273, 293, 303
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	2 cut(s)	38, 188
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	7 cut(s)	30, 77, 158, 233, 242, 305, 340
HapII	CCGG	6 cut(s)	27, 74, 155, 299, 332, 337
HhaI	GCGC	2 cut(s)	60, 65
Hin6I	GCGC	2 cut(s)	58, 63
HinP1I	GCGC	2 cut(s)	58, 63
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	6 cut(s)	27, 74, 155, 299, 332, 337
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	205
Hpy99I	CGWCG	4 cut(s)	101, 116, 262, 265
HpyAV	CCTTC	1 cut(s)	319
HpyCH4IV	ACGT	2 cut(s)	111, 223
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 45, 239, 272, 328, 337
HpySE526I	ACGT	2 cut(s)	111, 223
HspAI	GCGC	2 cut(s)	58, 63
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	70, 331
Lsp1109I	GCAGC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	355
MaeII	ACGT	2 cut(s)	111, 223
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	282
MspI	CCGG	6 cut(s)	27, 74, 155, 299, 332, 337
MspR9I	CCNGG	1 cut(s)	299
MteI	GCGCNGCGC	1 cut(s)	61
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	6 cut(s)	36, 45, 239, 272, 328, 337
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	31, 306
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PkrI	GCNGC	7 cut(s)	38, 62, 268, 271, 274, 294, 304
Ple19I	CGATCG	1 cut(s)	151
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	31, 306
PspPI	GGNCC	3 cut(s)	29, 304, 334
PvuI	CGATCG	1 cut(s)	151
Rsr2I	CGGWCCG	1 cut(s)	334
RsrII	CGGWCCG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	7 cut(s)	37, 61, 267, 270, 273, 293, 303
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	3 cut(s)	29, 304, 334
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	5 cut(s)	22, 26, 114, 219, 226
SfiI	GGCCNNNNNGGCC	1 cut(s)	239
SinI	GGWCC	1 cut(s)	334
SseBI	AGGCCT	1 cut(s)	233
SspMI	CTAG	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	297
TaiI	ACGT	2 cut(s)	114, 226
TauI	GCSGC	6 cut(s)	39, 63, 269, 272, 275, 305
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	334
XspI	CTAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.