Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Reverse (-)

8705608 .. 8708336

Gene Structure 2729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTACTCAGCGATTCGCTCGCTTCCACTCGATGGTGGACACGTTGGTGGTGACTACCATGGACCTCTTGACGGAACCAATCTTCCCGGTGACGCTTGTTTGGTTTTAACGACTGACCCTAAACCTCGTCTCCGGTGGACAACTGAGCTTCATGAGAGATTCGTTGACGCCGTTACTCAGCTCGGTGGTCCTGACAAAGCGACTCCCAAAACTATTATGAGAACAATGGGAGTGAAGGGTCTCACTCTCTACCACCTCAAATCACATCTTCAGAAATTCCGCCTAGGGAGGCAAGCTGGCAAAGAATCAACTGAGAACTCTAAAGATGCTTCTTGTGTAGGGGAGAGTCAGGACACAGGTTCATCTTCGACATCATCAATGAGAATGGCGCAGCAGGAGCAGAACGAGGGTTACCAAGTCACCGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACGATCAATTGGAGGTGCAACGGAGGCTCCAGCTGAGGATAGAGGCACAAGGAAAATACCTGCAATCGATTCTTGAAAAAGCTTGCAAGGCCTTTGACGAGCAAGCTGCTACTTTTGCTGGACTTGAGGCTGCTAGGGAAGAGCTATCAGAGCTAGCCATCAAAGTCTCCAATAGCTCTCAAGGAACATCAGTCCCGTACTTCGATGCAACAAAGATGATGATGATGCCATCGTTGTCAGAGCTTGCAGTAGCAATAGACAACAAAAACAACATCACAACCAACTGTTCAGTAGAAAGCTCTCTGACTTCCATCACACATGGGAGCTCTATATCTGCTGCATCAATGAAGAAGCGTCAACGTGGAGACAATTTGGGCGTAGGGTATGAATCAGGCTGGATTATGCCTAGTAGCACCATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

295

Amino Acids

32.2

Weight (kDa)

6.67

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	43 - 93	2.2e-07	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	139 - 188	1.5e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	531
AccB7I	CCANNNNNTGG	1 cut(s)	32
AciI	CCGC	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	5, 662
AfiI	CCNNNNNNNGG	2 cut(s)	32, 71
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	539
AleI	CACNNNNGTG	1 cut(s)	45
AloI	GAACNNNNNNTCC	2 cut(s)	67, 99
Alw21I	GWGCWC	2 cut(s)	439, 791
Alw26I	GTCTC	4 cut(s)	134, 245, 634, 822
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	4 cut(s)	391, 569, 593, 800
ApoI	RAATTY	1 cut(s)	275
AspA2I	CCTAGG	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	2 cut(s)	62, 188
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	62, 101, 412
AsuNHI	GCTAGC	1 cut(s)	616
AvaII	GGWCC	2 cut(s)	62, 188
AvrII	CCTAGG	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	463
Bbv12I	GWGCWC	2 cut(s)	439, 791
BbvCI	CCTCAGC	1 cut(s)	497
BbvI	GCAGC	4 cut(s)	403, 556, 580, 787
BccI	CCATC	5 cut(s)	26, 436, 629, 700, 782
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	4 cut(s)	134, 245, 634, 822
BfaI	CTAG	4 cut(s)	284, 597, 617, 870
BfuAI	ACCTGC	1 cut(s)	531
BisI	GCNGC	4 cut(s)	392, 570, 594, 801
BlnI	CCTAGG	1 cut(s)	283
BlsI	GCNGC	4 cut(s)	393, 571, 595, 802
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	2 cut(s)	62, 188
BmgT120I	GGNCC	2 cut(s)	62, 188
BmiI	GGNNCC	2 cut(s)	76, 491
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	4 cut(s)	316, 658, 678, 812
BmtI	GCTAGC	1 cut(s)	620
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	2 cut(s)	608, 627
BpuMI	CCSGG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	58, 283
BsaWI	WCCGGW	1 cut(s)	132
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 71
BseCI	ATCGAT	1 cut(s)	530
BseDI	CCNNGG	2 cut(s)	58, 283
BseLI	CCNNNNNNNGG	2 cut(s)	32, 71
BseMII	CTCAG	6 cut(s)	21, 135, 191, 303, 452, 488
BseXI	GCAGC	4 cut(s)	403, 556, 580, 787
BshFI	GGCC	1 cut(s)	554
BshVI	ATCGAT	1 cut(s)	530
BsiHKAI	GWGCWC	2 cut(s)	439, 791
BsiSI	CCGG	2 cut(s)	87, 133
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	32, 71
BsmAI	GTCTC	4 cut(s)	134, 245, 634, 822
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	554
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	439, 791
Bsp143I	GATC	1 cut(s)	466
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	6 cut(s)	20, 136, 190, 304, 451, 489
BspDI	ATCGAT	1 cut(s)	530
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	76, 491
BspMI	ACCTGC	1 cut(s)	531
BspOI	GCTAGC	1 cut(s)	620
BspQI	GCTCTTC	1 cut(s)	597
BspTNI	GGTCTC	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	58, 283
BssMI	GATC	1 cut(s)	466
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	58, 283
Bst4CI	ACNGT	1 cut(s)	749
Bst6I	CTCTTC	1 cut(s)	597
BstACI	GRCGYC	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	7 cut(s)	20, 294, 298, 547, 567, 618, 708
BstDEI	CTNAG	6 cut(s)	7, 144, 177, 312, 438, 497
BstDSI	CCRYGG	1 cut(s)	58
BstEII	GGTNACC	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	4 cut(s)	134, 245, 634, 822
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	6 cut(s)	397, 434, 487, 551, 578, 613
BstPI	GGTNACC	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	4 cut(s)	403, 556, 580, 787
BstV2I	GAAGAC	1 cut(s)	463
Bsu15I	ATCGAT	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	554
BsuTUI	ATCGAT	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	7 cut(s)	20, 294, 298, 547, 567, 618, 708
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	62, 188
ClaI	ATCGAT	1 cut(s)	530
CseI	GACGC	3 cut(s)	101, 176, 806
Csp6I	GTAC	2 cut(s)	4, 661
CviAII	CATG	3 cut(s)	59, 152, 782
CviQI	GTAC	2 cut(s)	4, 661
DdeI	CTNAG	6 cut(s)	7, 144, 177, 312, 438, 497
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	789
Eco130I	CCWWGG	2 cut(s)	58, 283
Eco147I	AGGCCT	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	791
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	62, 188
Eco53kI	GAGCTC	1 cut(s)	789
Eco57I	CTGAAG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	789
EcoO65I	GGTNACC	1 cut(s)	410
EcoT14I	CCWWGG	2 cut(s)	58, 283
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	2 cut(s)	58, 283
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	3 cut(s)	62, 155, 785
FaiI	YATR	7 cut(s)	60, 153, 218, 783, 794, 849, 866
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	3 cut(s)	58, 151, 781
Fnu4HI	GCNGC	4 cut(s)	392, 570, 594, 801
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	4 cut(s)	392, 570, 594, 801
FspBI	CTAG	4 cut(s)	284, 597, 617, 870
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	4 cut(s)	392, 570, 594, 801
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	2 cut(s)	87, 133
HgaI	GACGC	3 cut(s)	101, 176, 806
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	62, 155, 785
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	2 cut(s)	166, 821
HindII	GTYRAC	2 cut(s)	166, 821
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	7 cut(s)	13, 159, 202, 305, 346, 532, 851
HpaII	CCGG	2 cut(s)	87, 133
HphI	GGTGA	3 cut(s)	62, 101, 412
Hpy166II	GTNNAC	4 cut(s)	38, 138, 166, 821
Hpy188I	TCNGA	5 cut(s)	273, 441, 613, 703, 768
Hpy188III	TCNNGA	5 cut(s)	68, 152, 191, 350, 536
Hpy8I	GTNNAC	4 cut(s)	38, 138, 166, 821
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	749
HpyCH4IV	ACGT	3 cut(s)	42, 433, 823
HpyCH4V	TGCA	6 cut(s)	481, 526, 549, 671, 710, 803
HpyF10VI	GCNNNNNNNGC	6 cut(s)	397, 434, 487, 551, 578, 613
HpyF3I	CTNAG	6 cut(s)	7, 144, 177, 312, 438, 497
HpySE526I	ACGT	3 cut(s)	42, 433, 823
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	62, 155, 785
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	466
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	3 cut(s)	397, 495, 786
Lsp1109I	GCAGC	4 cut(s)	403, 556, 580, 787
LweI	GCATC	4 cut(s)	316, 658, 678, 812
MaeI	CTAG	4 cut(s)	284, 597, 617, 870
MaeII	ACGT	3 cut(s)	42, 433, 823
MaeIII	GTNAC	5 cut(s)	50, 89, 172, 410, 418
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	6 cut(s)	74, 260, 357, 468, 614, 823
MfeI	CAATTG	1 cut(s)	470
MhlI	GDGCHC	2 cut(s)	439, 791
MluCI	AATT	3 cut(s)	275, 470, 832
MlyI	GAGTC	2 cut(s)	196, 355
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	2 cut(s)	87, 133
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	470
MwoI	GCNNNNNNNGC	6 cut(s)	397, 434, 487, 551, 578, 613
NciI	CCSGG	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	466
NheI	GCTAGC	1 cut(s)	616
NlaIII	CATG	3 cut(s)	62, 155, 785
NlaIV	GGNNCC	2 cut(s)	76, 491
NmuCI	GTSAC	3 cut(s)	50, 89, 418
OliI	CACNNNNGTG	1 cut(s)	45
PagI	TCATGA	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	554
PciSI	GCTCTTC	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	5 cut(s)	13, 159, 305, 532, 851
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	393, 571, 595, 802
PleI	GAGTC	2 cut(s)	196, 354
PpsI	GAGTC	2 cut(s)	196, 354
Ppu21I	YACGTR	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	791
PspEI	GGTNACC	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	76, 491
PspPI	GGNCC	2 cut(s)	62, 188
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	2 cut(s)	5, 662
RsaNI	GTAC	2 cut(s)	4, 661
RseI	CAYNNNNRTG	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	791
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	4 cut(s)	392, 570, 594, 801
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	2 cut(s)	62, 188
SchI	GAGTC	2 cut(s)	196, 355
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	439, 791
SfaNI	GCATC	4 cut(s)	316, 658, 678, 812
SinI	GGWCC	2 cut(s)	62, 188
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	587, 642
SmoI	CTYRAG	2 cut(s)	587, 642
Sse9I	AATT	3 cut(s)	275, 470, 832
SseBI	AGGCCT	1 cut(s)	554
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	4 cut(s)	284, 597, 617, 870
SstI	GAGCTC	1 cut(s)	791
StuI	AGGCCT	1 cut(s)	554
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	58, 283
TaaI	ACNGT	1 cut(s)	749
TaiI	ACGT	3 cut(s)	45, 436, 826
TaqI	TCGA	4 cut(s)	30, 368, 530, 666
TasI	AATT	3 cut(s)	275, 470, 832
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	5 cut(s)	13, 159, 305, 532, 851
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseFI	GTSAC	3 cut(s)	50, 89, 418
TseI	GCWGC	4 cut(s)	391, 569, 593, 800
Tsp45I	GTSAC	3 cut(s)	50, 89, 418
TspDTI	ATGAA	4 cut(s)	140, 351, 824, 864
TspGWI	ACGGA	2 cut(s)	87, 499
Van91I	CCANNNNNTGG	1 cut(s)	32
VpaK11BI	GGWCC	2 cut(s)	62, 188
XapI	RAATTY	1 cut(s)	275
XmaJI	CCTAGG	1 cut(s)	283
XspI	CTAG	4 cut(s)	284, 597, 617, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.