Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Forward (+)

586207 .. 591015

Gene Structure 4809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G007000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTACTCTGCTATTCATTCTCTTCCTATGGATGGGAGTATTTGTGGGCATGGAGAGTTCAGTGGATCGTTGGACGGCACGAACCTGCCCGGCGATGCTTGCTTGGTTCTGACTACGGATCCAAAGCCCCGGCTGAGGTGGACTGCGGAGCTCCATGAGAGGTTTGTGGATGCTGTGACTCAACTTGGTGGCCCTGACAAAGCAACACCGAAGGCCATTATGAGAACAATGGGAGTAAAAGGCCTAACCCTTTATCACTTGAAATCTCATCTTCAGAAATACCGATTGGGGAAGCAATCATGCAAAGATTCAGCTGAAAACTCCAAGGATGGGATTGCAGCTTCTTGCATAGCTGAAAGTCAGGACACTGGTTCATCCTCAGCAACCTCATCCAGAGTGATTGCGCAAGATTTGAATGATGGCTACCAGGTTACTGAGGCATTGCGAGTACAAATGGAAGTCCAACGGAGACTGCATGAGCAGCTGGAGGTTCAGCGTCGTCTTCAACTTCGAATTGAAGCACAGGGCAAGTATCTTCAGTCAATACTCGAGAAAGCTTGTAAGGCTCTGAATGATCAGGCTGCATCGGCCGCCGGGCTTGAAGCTGCTAAAGAGGAACTCTCTGAACTAGCTATTAAGGTTTCTAATGACTGTGAAGGGATAACCCCACTTGATACCATGAAAATGCCTTCCTTGTCTGAAATTGCTGCCGCTTTAGAGAACAGAAATGCCTCCAATGTACTGGCTCGGCTTGGCAACTGCTCTGTTGATAGCTGCTTGGCATCAACTGGAACCCCTGTTTCTCCAATGGATATGAGTTCACTGGCTGCTGCTATGAAGAAAAGACAAAGGCCCTTCTTTGGTAATGGAGACTCGTTGCCCTTGGAGGGTAACATGAGGCAAGAAGTAGAATGGATGATGAGTAATATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

312

Amino Acids

33.63

Weight (kDa)

5.93

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	93
AciI	CCGC	3 cut(s)	146, 591, 711
AclWI	GGATC	3 cut(s)	73, 113, 126
AcoI	YGGCCR	1 cut(s)	588
AcuI	CTGAAG	2 cut(s)	257, 521
AfaI	GTAC	3 cut(s)	5, 450, 741
AfiI	CCNNNNNNNGG	5 cut(s)	32, 135, 330, 860, 887
AgsI	TTSAA	5 cut(s)	262, 415, 506, 518, 602
AjnI	CCWGG	1 cut(s)	426
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	9 cut(s)	151, 314, 341, 353, 484, 557, 605, 632, 774
AluI	AGCT	9 cut(s)	151, 314, 341, 353, 484, 557, 605, 632, 774
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	463, 864
AlwI	GGATC	3 cut(s)	73, 113, 126
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	5 cut(s)	190, 213, 241, 588, 851
ApeKI	GCWGC	8 cut(s)	338, 481, 581, 605, 707, 774, 827, 830
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	191, 852
AsuC2I	CCSGG	3 cut(s)	90, 130, 595
AsuII	TTCGAA	1 cut(s)	511
AvaI	CYCGRG	1 cut(s)	548
BamHI	GGATCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	153
BbvCI	CCTCAGC	2 cut(s)	134, 379
BbvI	GCAGC	8 cut(s)	350, 493, 568, 592, 694, 761, 814, 817
BccI	CCATC	3 cut(s)	26, 323, 413
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	428
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	3 cut(s)	90, 130, 595
BcoDI	GTCTC	2 cut(s)	463, 864
BfaI	CTAG	1 cut(s)	629
BfuAI	ACCTGC	1 cut(s)	93
Bme1390I	CCNGG	4 cut(s)	90, 130, 428, 595
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	191, 852
BmiI	GGNNCC	2 cut(s)	120, 793
BmrFI	CCNGG	4 cut(s)	90, 130, 428, 595
BmsI	GCATC	4 cut(s)	85, 160, 593, 791
BpiI	GAAGAC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BpmI	CTGGAG	1 cut(s)	506
Bpu10I	CCTNAGC	2 cut(s)	134, 379
Bpu14I	TTCGAA	1 cut(s)	511
BpuMI	CCSGG	3 cut(s)	90, 130, 595
BsaJI	CCNNGG	3 cut(s)	128, 324, 882
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 135, 330, 860, 887
Bse1I	ACTGG	4 cut(s)	373, 747, 793, 828
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	3 cut(s)	128, 324, 882
BseGI	GGATG	6 cut(s)	37, 175, 334, 374, 389, 921
BseLI	CCNNNNNNNGG	5 cut(s)	32, 135, 330, 860, 887
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	3 cut(s)	125, 393, 426
BseNI	ACTGG	4 cut(s)	373, 747, 793, 828
BseX3I	CGGCCG	1 cut(s)	588
BseXI	GCAGC	8 cut(s)	350, 493, 568, 592, 694, 761, 814, 817
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	5 cut(s)	192, 215, 243, 590, 853
BsiEI	CGRYCG	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	3 cut(s)	90, 130, 594
BslI	CCNNNNNNNGG	5 cut(s)	32, 135, 330, 860, 887
BsmAI	GTCTC	2 cut(s)	463, 864
BsnI	GGCC	5 cut(s)	192, 215, 243, 590, 853
BsoBI	CYCGRG	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	65, 118, 574
BspACI	CCGC	3 cut(s)	146, 591, 711
BspANI	GGCC	5 cut(s)	192, 215, 243, 590, 853
BspCNI	CTCAG	3 cut(s)	126, 392, 427
BspLI	GGNNCC	2 cut(s)	120, 793
BspMI	ACCTGC	1 cut(s)	93
BspPI	GGATC	3 cut(s)	73, 113, 126
BspT104I	TTCGAA	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	440
BsrI	ACTGG	4 cut(s)	373, 747, 793, 828
BssECI	CCNNGG	3 cut(s)	128, 324, 882
BssMI	GATC	3 cut(s)	65, 118, 574
BssT1I	CCWWGG	2 cut(s)	324, 882
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	27
BstBI	TTCGAA	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	134, 379, 435
BstF5I	GGATG	6 cut(s)	37, 175, 334, 374, 389, 921
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	3 cut(s)	68, 121, 577
BstMAI	GTCTC	2 cut(s)	463, 864
BstMBI	GATC	3 cut(s)	65, 118, 574
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 481, 563, 587, 590
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	4 cut(s)	88, 128, 426, 593
BstV1I	GCAGC	8 cut(s)	350, 493, 568, 592, 694, 761, 814, 817
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	588
BsuRI	GGCC	5 cut(s)	192, 215, 243, 590, 853
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	6 cut(s)	37, 175, 334, 374, 389, 921
BtsIMutI	CAGTG	3 cut(s)	67, 366, 821
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	191, 852
CseI	GACGC	1 cut(s)	485
CsiI	ACCWGGT	1 cut(s)	426
Csp6I	GTAC	3 cut(s)	4, 449, 740
CviAII	CATG	6 cut(s)	50, 155, 300, 476, 679, 895
CviQI	GTAC	3 cut(s)	4, 449, 740
DdeI	CTNAG	3 cut(s)	134, 379, 435
DpnI	GATC	3 cut(s)	67, 120, 576
DpnII	GATC	3 cut(s)	65, 118, 574
EaeI	YGGCCR	1 cut(s)	588
EagI	CGGCCG	1 cut(s)	588
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	588
Eco130I	CCWWGG	2 cut(s)	324, 882
Eco147I	AGGCCT	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	588
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	257, 521
Eco88I	CYCGRG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	852
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	324, 882
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	2 cut(s)	324, 882
FaeI	CATG	6 cut(s)	53, 158, 303, 479, 682, 898
FatI	CATG	6 cut(s)	49, 154, 299, 475, 678, 894
FbaI	TGATCA	1 cut(s)	574
FokI	GGATG	6 cut(s)	44, 182, 341, 361, 376, 928
FriOI	GRGCYC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	629
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	5 cut(s)	192, 215, 243, 590, 853
HapII	CCGG	3 cut(s)	90, 130, 594
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	6 cut(s)	53, 158, 303, 479, 682, 898
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	3 cut(s)	178, 308, 872
HpaII	CCGG	3 cut(s)	90, 130, 594
Hpy166II	GTNNAC	2 cut(s)	141, 821
Hpy188I	TCNGA	5 cut(s)	111, 276, 570, 625, 700
Hpy188III	TCNNGA	3 cut(s)	362, 393, 550
Hpy8I	GTNNAC	2 cut(s)	141, 821
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	4 cut(s)	205, 650, 699, 865
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4V	TGCA	5 cut(s)	303, 338, 348, 475, 584
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 481, 563, 587, 590
HpyF3I	CTNAG	3 cut(s)	134, 379, 435
Hsp92II	CATG	6 cut(s)	53, 158, 303, 479, 682, 898
HspAI	GCGC	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	65, 118, 574
LmnI	GCTCC	2 cut(s)	148, 156
Lsp1109I	GCAGC	8 cut(s)	350, 493, 568, 592, 694, 761, 814, 817
LweI	GCATC	4 cut(s)	85, 160, 593, 791
MabI	ACCWGGT	1 cut(s)	426
MaeI	CTAG	1 cut(s)	629
MaeIII	GTNAC	3 cut(s)	175, 430, 890
MalI	GATC	3 cut(s)	67, 120, 576
MboI	GATC	3 cut(s)	65, 118, 574
MboII	GAAGA	5 cut(s)	14, 263, 494, 527, 850
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	2 cut(s)	513, 702
MlyI	GAGTC	2 cut(s)	172, 866
MmeI	TCCRAC	2 cut(s)	51, 487
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	2 cut(s)	314, 484
MspI	CCGG	3 cut(s)	90, 130, 594
MspR9I	CCNGG	4 cut(s)	90, 130, 428, 595
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	5 cut(s)	99, 481, 563, 587, 590
NciI	CCSGG	3 cut(s)	90, 130, 595
NdeII	GATC	3 cut(s)	65, 118, 574
NlaIII	CATG	6 cut(s)	53, 158, 303, 479, 682, 898
NlaIV	GGNNCC	2 cut(s)	120, 793
NmeAIII	GCCGAG	1 cut(s)	727
NmuCI	GTSAC	1 cut(s)	175
NsbI	TGCGCA	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	548
PceI	AGGCCT	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	308
PleI	GAGTC	2 cut(s)	172, 866
PpsI	GAGTC	2 cut(s)	172, 866
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	120, 793
PspPI	GGNCC	2 cut(s)	191, 852
PsuI	RGATCY	1 cut(s)	118
PvuII	CAGCTG	2 cut(s)	314, 484
RsaI	GTAC	3 cut(s)	5, 450, 741
RsaNI	GTAC	3 cut(s)	4, 449, 740
RseI	CAYNNNNRTG	1 cut(s)	683
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	636
Sau3AI	GATC	3 cut(s)	65, 118, 574
Sau96I	GGNCC	2 cut(s)	191, 852
SchI	GAGTC	2 cut(s)	172, 866
ScrFI	CCNGG	4 cut(s)	90, 130, 428, 595
SduI	GDGCHC	1 cut(s)	153
SexAI	ACCWGGT	1 cut(s)	426
SfaNI	GCATC	4 cut(s)	85, 160, 593, 791
Sfr274I	CTCGAG	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	511
SlaI	CTCGAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	2 cut(s)	513, 702
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	3 cut(s)	146, 591, 711
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	1 cut(s)	629
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	88, 128, 426, 593
StyI	CCWWGG	2 cut(s)	324, 882
TaaI	ACNGT	1 cut(s)	653
TaqI	TCGA	2 cut(s)	511, 549
TasI	AATT	2 cut(s)	513, 702
TatI	WGTACW	3 cut(s)	3, 448, 739
TauI	GCSGC	2 cut(s)	593, 713
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	3 cut(s)	67, 373, 828
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	8 cut(s)	338, 481, 581, 605, 707, 774, 827, 830
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	5, 363, 695, 851
TspGWI	ACGGA	2 cut(s)	131, 481
TspRI	CASTG	3 cut(s)	67, 373, 828
XhoI	CTCGAG	1 cut(s)	548
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.