Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Reverse (-)

7936592 .. 7938705

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTACTCGGCGATTCGGTCTTCGCTTCCTCTAGATGGCAGCTTGGGAGACTACTCTGACGGAACCAATCTTCCCATCGACGCTTGTCTGGTCCTAACCACTGACCCCAAGCCTCGCCTTCGTTGGACCTCTGAGCTCCATGAAAGATTCGTTGACGCCGTCACTCAGCTCGGCGGACCCGACAAAGCAACGCCTAAAACTATAATGAGAACAATGGGAGTGAAGGGTCTCACTCTTTACCATCTCAAATCTCATCTTCAGAAATTCCGCTTGGGGAGGCAATCTTGTAAAGAATCAATTGACAACTCTAAGGATGTTTCTTGTGTTGCGGAGAGTCAGGACACTGGTTCATCTTCAACATCATCCTTAAGATTGGCTGCTCAAGAACAGAACGAGAGTTACCAGGTCACTGAAGCTTTGCGTGCCCAGATGGAAGTCCAAAGAAGACTACACGAGCAACTAGAGGTGCAAAGGCGACTCCAGTTAAGGATCGAGGCACAAGGGAAGTACCTGCAATCAATTCTAGAGAAAGCTTGCAAGGCTATAGAGGAGCAAGCTGTTGCATTTGCTGGGTTAGAGGCAGCTAGAGAAGAGCTTTCAGAGCTAGCCATAAAGGCCTCCATCACCAATGGGTGCCAAGGAACAACAAGCACCTTCGACACAACCAAAATGATGATTCCATCCTTATCCGAGCTTGCAGTAGCAATAGAGCACAAGAACAACTGTTCAGCAGAGAGCTCTCTGACTTCCAGCACTGTAGGAAGTCCGGTATCAGCTGCGTTGATGAAGAAGAGACAACGAGGAGTGTTTGGAAATGGAGATAGTGTGGTTGTTGGTCATGATGCTGGATGGGTTATGCCTAGTAGTAGCATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009566 GO:0009567 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

292

Amino Acids

31.72

Weight (kDa)

6.61

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	39 - 89	2.7e-07	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	135 - 184	1.7e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	633
AciI	CCGC	3 cut(s)	174, 268, 329
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	2 cut(s)	242, 432
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	5, 509
AfiI	CCNNNNNNNGG	1 cut(s)	35
AflII	CTTAAG	1 cut(s)	367
AgsI	TTSAA	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
Alw21I	GWGCWC	3 cut(s)	138, 714, 740
Alw26I	GTCTC	3 cut(s)	42, 233, 787
AlwI	GGATC	1 cut(s)	497
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	4 cut(s)	39, 377, 581, 776
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	3 cut(s)	91, 126, 176
AsuHPI	GGTGA	1 cut(s)	616
AsuNHI	GCTAGC	1 cut(s)	604
AvaII	GGWCC	3 cut(s)	91, 126, 176
BaeGI	GKGCMC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	633
BanII	GRGCYC	2 cut(s)	138, 740
BauI	CACGAG	1 cut(s)	452
BbsI	GAAGAC	2 cut(s)	12, 451
Bbv12I	GWGCWC	3 cut(s)	138, 714, 740
BbvI	GCAGC	4 cut(s)	51, 364, 593, 763
BccI	CCATC	7 cut(s)	29, 83, 249, 424, 629, 688, 843
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	404
BcoDI	GTCTC	3 cut(s)	42, 233, 787
BfaI	CTAG	6 cut(s)	32, 461, 524, 585, 605, 861
BfmI	CTRYAG	2 cut(s)	543, 756
BfrI	CTTAAG	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	614
BisI	GCNGC	4 cut(s)	40, 378, 582, 777
BlsI	GCNGC	4 cut(s)	41, 379, 583, 778
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	3 cut(s)	91, 126, 176
BmgT120I	GGNCC	3 cut(s)	91, 126, 176
BmiI	GGNNCC	3 cut(s)	64, 178, 635
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	832
BmtI	GCTAGC	1 cut(s)	608
BoxI	GACNNNNGTC	1 cut(s)	84
BpiI	GAAGAC	2 cut(s)	12, 451
BpmI	CTGGAG	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	637
BsaWI	WCCGGW	1 cut(s)	766
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	349, 481
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	4 cut(s)	319, 362, 680, 854
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	123, 179
BseNI	ACTGG	2 cut(s)	349, 481
BseRI	GAGGAG	2 cut(s)	563, 816
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	4 cut(s)	51, 364, 593, 763
BseYI	CCCAGC	1 cut(s)	569
BshFI	GGCC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	633
BsiHKAI	GWGCWC	3 cut(s)	138, 714, 740
BsiSI	CCGG	1 cut(s)	767
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	3 cut(s)	42, 233, 787
BsnI	GGCC	1 cut(s)	617
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	4 cut(s)	138, 427, 714, 740
Bsp143I	GATC	1 cut(s)	489
BspACI	CCGC	3 cut(s)	174, 268, 329
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	2 cut(s)	124, 178
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	3 cut(s)	64, 178, 635
BspMI	ACCTGC	1 cut(s)	519
BspOI	GCTAGC	1 cut(s)	608
BspPI	GGATC	1 cut(s)	497
BspQI	GCTCTTC	1 cut(s)	585
BspT107I	GGYRCC	1 cut(s)	633
BspTI	CTTAAG	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	349, 481
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	1 cut(s)	489
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	637
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	725, 757
Bst6I	CTCTTC	2 cut(s)	585, 785
BstACI	GRCGYC	1 cut(s)	156
BstAFI	CTTAAG	1 cut(s)	367
BstC8I	GCNNGC	5 cut(s)	423, 535, 555, 606, 696
BstDEI	CTNAG	3 cut(s)	132, 165, 309
BstF5I	GGATG	4 cut(s)	319, 362, 680, 854
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	3 cut(s)	42, 233, 787
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	4 cut(s)	422, 539, 601, 614
BstNI	CCWGG	1 cut(s)	404
BstPAI	GACNNNNGTC	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	2 cut(s)	543, 756
BstSLI	GKGCMC	1 cut(s)	427
BstV1I	GCAGC	4 cut(s)	51, 364, 593, 763
BstV2I	GAAGAC	2 cut(s)	12, 451
BsuRI	GGCC	1 cut(s)	617
BtsCI	GGATG	4 cut(s)	319, 362, 680, 854
BtsIMutI	CAGTG	4 cut(s)	99, 342, 408, 753
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	5 cut(s)	423, 535, 555, 606, 696
CciI	TCATGA	1 cut(s)	838
Cfr13I	GGNCC	3 cut(s)	91, 126, 176
CseI	GACGC	2 cut(s)	89, 164
CsiI	ACCWGGT	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	4, 508
CviAII	CATG	2 cut(s)	140, 839
CviQI	GTAC	2 cut(s)	4, 508
DdeI	CTNAG	3 cut(s)	132, 165, 309
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	585, 785
EarI	CTCTTC	2 cut(s)	585, 785
EciI	GGCGGA	1 cut(s)	189
Ecl136II	GAGCTC	2 cut(s)	136, 738
Eco130I	CCWWGG	1 cut(s)	637
Eco147I	AGGCCT	1 cut(s)	617
Eco24I	GRGCYC	2 cut(s)	138, 740
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	3 cut(s)	91, 126, 176
Eco53kI	GAGCTC	2 cut(s)	136, 738
Eco57I	CTGAAG	2 cut(s)	242, 432
EcoICRI	GAGCTC	2 cut(s)	136, 738
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	637
EcoT38I	GRGCYC	2 cut(s)	138, 740
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	2 cut(s)	143, 842
FaiI	YATR	6 cut(s)	141, 203, 545, 611, 840, 857
FatI	CATG	2 cut(s)	139, 838
Fnu4HI	GCNGC	4 cut(s)	40, 378, 582, 777
FokI	GGATG	4 cut(s)	326, 349, 667, 861
FriOI	GRGCYC	2 cut(s)	138, 740
Fsp4HI	GCNGC	4 cut(s)	40, 378, 582, 777
FspBI	CTAG	6 cut(s)	32, 461, 524, 585, 605, 861
GluI	GCNGC	4 cut(s)	40, 378, 582, 777
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	617
HapII	CCGG	1 cut(s)	767
HgaI	GACGC	2 cut(s)	89, 164
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	143, 842
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	2 cut(s)	414, 531
HinfI	GANTC	6 cut(s)	13, 147, 293, 334, 477, 676
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	6 cut(s)	58, 133, 261, 601, 691, 744
Hpy188III	TCNNGA	5 cut(s)	32, 338, 383, 524, 839
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	128, 217, 664
HpyCH4III	ACNGT	2 cut(s)	725, 757
HpyCH4V	TGCA	5 cut(s)	469, 514, 537, 563, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	422, 539, 601, 614
HpyF3I	CTNAG	3 cut(s)	132, 165, 309
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	143, 842
Kzo9I	GATC	1 cut(s)	489
LguI	GCTCTTC	1 cut(s)	585
LmnI	GCTCC	2 cut(s)	141, 550
Lsp1109I	GCAGC	4 cut(s)	51, 364, 593, 763
LweI	GCATC	1 cut(s)	832
MabI	ACCWGGT	1 cut(s)	402
MaeI	CTAG	6 cut(s)	32, 461, 524, 585, 605, 861
MaeIII	GTNAC	3 cut(s)	160, 398, 406
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	8 cut(s)	12, 62, 248, 345, 456, 602, 799, 802
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	4 cut(s)	138, 427, 714, 740
MluCI	AATT	3 cut(s)	263, 297, 519
MlyI	GAGTC	2 cut(s)	343, 471
MmeI	TCCRAC	1 cut(s)	104
MseI	TTAA	2 cut(s)	368, 485
MspA1I	CMGCKG	1 cut(s)	776
MspCI	CTTAAG	1 cut(s)	367
MspI	CCGG	1 cut(s)	767
MspR9I	CCNGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	4 cut(s)	422, 539, 601, 614
NdeII	GATC	1 cut(s)	489
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	2 cut(s)	143, 842
NlaIV	GGNNCC	3 cut(s)	64, 178, 635
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	160, 406
PagI	TCATGA	1 cut(s)	838
PceI	AGGCCT	1 cut(s)	617
PciSI	GCTCTTC	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 177
PfeI	GAWTC	4 cut(s)	13, 147, 293, 676
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	41, 379, 583, 778
PleI	GAGTC	2 cut(s)	342, 471
PpsI	GAGTC	2 cut(s)	342, 471
PshAI	GACNNNNGTC	1 cut(s)	84
Psp124BI	GAGCTC	2 cut(s)	138, 740
Psp6I	CCWGG	1 cut(s)	402
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	3 cut(s)	64, 178, 635
PspPI	GGNCC	3 cut(s)	91, 126, 176
PsrI	GAACNNNNNNTAC	2 cut(s)	383, 415
PsyI	GACNNNGTC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	5, 509
RsaNI	GTAC	2 cut(s)	4, 508
SacI	GAGCTC	2 cut(s)	138, 740
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	368, 485
SatI	GCNGC	4 cut(s)	40, 378, 582, 777
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	3 cut(s)	91, 126, 176
SchI	GAGTC	2 cut(s)	343, 471
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	4 cut(s)	138, 427, 714, 740
SexAI	ACCWGGT	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	832
SfcI	CTRYAG	2 cut(s)	543, 756
SinI	GGWCC	3 cut(s)	91, 126, 176
SmlI	CTYRAG	2 cut(s)	367, 381
SmoI	CTYRAG	2 cut(s)	367, 381
Sse9I	AATT	3 cut(s)	263, 297, 519
SseBI	AGGCCT	1 cut(s)	617
SsiI	CCGC	3 cut(s)	174, 268, 329
SspMI	CTAG	6 cut(s)	32, 461, 524, 585, 605, 861
SstI	GAGCTC	2 cut(s)	138, 740
StuI	AGGCCT	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	2 cut(s)	725, 757
TaqI	TCGA	3 cut(s)	78, 492, 657
TaqII	GACCGA	1 cut(s)	6
TasI	AATT	3 cut(s)	263, 297, 519
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	4 cut(s)	13, 147, 293, 676
Tru1I	TTAA	2 cut(s)	368, 485
Tru9I	TTAA	2 cut(s)	368, 485
TscAI	CASTG	4 cut(s)	106, 349, 415, 760
TseFI	GTSAC	2 cut(s)	160, 406
TseI	GCWGC	4 cut(s)	39, 377, 581, 776
Tsp45I	GTSAC	2 cut(s)	160, 406
TspDTI	ATGAA	3 cut(s)	156, 339, 800
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	4 cut(s)	106, 349, 415, 760
Tth111I	GACNNNGTC	1 cut(s)	158
Vha464I	CTTAAG	1 cut(s)	367
VpaK11BI	GGWCC	3 cut(s)	91, 126, 176
XapI	RAATTY	1 cut(s)	263
XbaI	TCTAGA	2 cut(s)	31, 523
XspI	CTAG	6 cut(s)	32, 461, 524, 585, 605, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.