Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Reverse (-)

37747211 .. 37751509

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG192100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTACTCTGCTTTGCATTCTCTGCCGTTGGATGGGGGTGTTTGTGGGCACGGAGAGTTCAGTGGATCGTTGGATGGTACAAACCTGCCGGGTGATGCTTGCTTGGTTCTGACTACGGATCCGAAGCCCCGGCTGAGGTGGACGGCGGAGCTCCATGAGAGGTTTGTGGACGCTGTGACTCAGCTTGGTGGCCCTGACAAAGCGACACCTAAGACCATTATGAGAACAATGGGAGTAAAAGGCCTTACCCTATATCACTTGAAATCACACCTTCAGAAATATCGACTAGGGAAGCAATCGTTTAAAGAATCAACTGAAAACTCGAAGGATGTTGGGATTGCAGCTTCTTGCATTGCTGAAAGTCAGGACACTGGGTCTTCGGCAACCTCATCAAGAGTGATCGCCCAAGATTTGAATGATGGCTACCAGGTTACTGAGGCTTTGCGTGTACAAATGGAAGTGCAAAGAAGACTGCATGAGCAGCTGGAGGTGCAGCGTCGCCTTCAACTTCGTATTGAAGCACAGGGAAAGTACCTACAGTCTATACTTGAGAAAGCTTGTAAGGCTCTGAATGACCAGGCTGCAACTGCTGCTGGGCTTGAAGCTGCTAAGGAAGAACTCTCTGAACTTGCTATTAAGGTTTCCACTGACTGTCAAGGGATGGCCCCACTGGATACCATAAAAATGCAGTCCTTGTCTGAAATTGCTGCAGCAATAGAGAACAAAAGTGCCCCAAATGTACTGGCTCGCATCGGCAATTGCTCTGTTGATAGCTGCTTGACATCAACTGGAAGCCCTGGTTCTCCAATGGGTATGAGTTCACTGGCTGCTGCTATGAAGAAAAGGCAAAGGCCCTTCTTCAGCAATGGAGACTCGTTGCCCTTAGAGGGCAACATGAGGCAAGAAGTAGAATGGATGATGAGTAATATTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

311

Amino Acids

33.61

Weight (kDa)

6.33

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	44 - 95	1.7e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	143 - 189	1.1e-26	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	3 cut(s)	73, 113, 126
AcuI	CTGAAG	2 cut(s)	257, 844
AfaI	GTAC	5 cut(s)	5, 79, 450, 533, 741
AfiI	CCNNNNNNNGG	3 cut(s)	32, 135, 887
AgsI	TTSAA	5 cut(s)	262, 415, 506, 518, 602
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	3 cut(s)	426, 576, 796
AluBI	AGCT	7 cut(s)	151, 184, 344, 484, 557, 605, 774
AluI	AGCT	7 cut(s)	151, 184, 344, 484, 557, 605, 774
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	864
AlwI	GGATC	3 cut(s)	73, 113, 126
AoxI	GGCC	4 cut(s)	190, 241, 663, 851
AspS9I	GGNCC	3 cut(s)	191, 664, 852
AsuC2I	CCSGG	2 cut(s)	90, 130
AsuHPI	GGTGA	1 cut(s)	104
BaeGI	GKGCMC	2 cut(s)	51, 733
BamHI	GGATCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	369, 475
Bbv12I	GWGCWC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	134
BccI	CCATC	4 cut(s)	26, 68, 413, 655
BceAI	ACGGC	2 cut(s)	10, 159
BciT130I	CCWGG	3 cut(s)	428, 578, 798
BciVI	GTATCC	1 cut(s)	667
BcnI	CCSGG	2 cut(s)	90, 130
BcoDI	GTCTC	1 cut(s)	864
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	2 cut(s)	536, 708
BfuAI	ACCTGC	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	667
Bme1390I	CCNGG	5 cut(s)	90, 130, 428, 578, 798
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmgT120I	GGNCC	3 cut(s)	191, 664, 852
BmiI	GGNNCC	2 cut(s)	120, 666
BmrFI	CCNGG	5 cut(s)	90, 130, 428, 578, 798
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	85, 759
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	2 cut(s)	369, 475
BpmI	CTGGAG	1 cut(s)	506
Bpu10I	CCTNAGC	2 cut(s)	134, 609
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	2 cut(s)	90, 130
BsaJI	CCNNGG	2 cut(s)	128, 796
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 135, 887
Bse1I	ACTGG	5 cut(s)	376, 675, 747, 793, 828
Bse3DI	GCAATG	2 cut(s)	351, 871
BseBI	CCWGG	3 cut(s)	428, 578, 798
BseDI	CCNNGG	2 cut(s)	128, 796
BseGI	GGATG	5 cut(s)	37, 79, 334, 666, 921
BseLI	CCNNNNNNNGG	3 cut(s)	32, 135, 887
BseMI	GCAATG	2 cut(s)	351, 871
BseMII	CTCAG	3 cut(s)	125, 194, 426
BseNI	ACTGG	5 cut(s)	376, 675, 747, 793, 828
BseSI	GKGCMC	2 cut(s)	51, 733
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	1 cut(s)	512
BshFI	GGCC	4 cut(s)	192, 243, 665, 853
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	89, 130
BslI	CCNNNNNNNGG	3 cut(s)	32, 135, 887
BsmAI	GTCTC	1 cut(s)	864
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	4 cut(s)	192, 243, 665, 853
Bsp1286I	GDGCHC	3 cut(s)	51, 153, 733
Bsp1407I	TGTACA	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	65, 118, 399
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	4 cut(s)	192, 243, 665, 853
BspCNI	CTCAG	3 cut(s)	126, 193, 427
BspLI	GGNNCC	2 cut(s)	120, 666
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	93
BspPI	GGATC	3 cut(s)	73, 113, 126
BsrDI	GCAATG	2 cut(s)	351, 871
BsrGI	TGTACA	1 cut(s)	448
BsrI	ACTGG	5 cut(s)	376, 675, 747, 793, 828
BssECI	CCNNGG	2 cut(s)	128, 796
BssMI	GATC	3 cut(s)	65, 118, 399
Bst2UI	CCWGG	3 cut(s)	428, 578, 798
Bst4CI	ACNGT	2 cut(s)	540, 653
BstAPI	GCANNNNNTGC	2 cut(s)	22, 590
BstAUI	TGTACA	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	100, 748
BstDEI	CTNAG	6 cut(s)	134, 180, 210, 435, 609, 883
BstF5I	GGATG	5 cut(s)	37, 79, 334, 666, 921
BstKTI	GATC	3 cut(s)	68, 121, 402
BstMAI	GTCTC	1 cut(s)	864
BstMBI	GATC	3 cut(s)	65, 118, 399
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 481, 490, 563, 587, 590
BstNI	CCWGG	3 cut(s)	428, 578, 798
BstSCI	CCNGG	5 cut(s)	88, 128, 426, 576, 796
BstSFI	CTRYAG	2 cut(s)	536, 708
BstSLI	GKGCMC	2 cut(s)	51, 733
BstV2I	GAAGAC	2 cut(s)	369, 475
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	667
BsuRI	GGCC	4 cut(s)	192, 243, 665, 853
BtsCI	GGATG	5 cut(s)	37, 79, 334, 666, 921
BtsIMutI	CAGTG	5 cut(s)	67, 369, 645, 668, 821
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	100, 748
Cfr13I	GGNCC	3 cut(s)	191, 664, 852
CseI	GACGC	2 cut(s)	179, 485
CsiI	ACCWGGT	1 cut(s)	426
Csp6I	GTAC	5 cut(s)	4, 78, 449, 532, 740
CviAII	CATG	4 cut(s)	155, 476, 895, 933
CviQI	GTAC	5 cut(s)	4, 78, 449, 532, 740
DdeI	CTNAG	6 cut(s)	134, 180, 210, 435, 609, 883
DpnI	GATC	3 cut(s)	67, 120, 401
DpnII	GATC	3 cut(s)	65, 118, 399
DraI	TTTAAA	1 cut(s)	304
DriI	GACNNNNNGTC	1 cut(s)	373
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EciI	GGCGGA	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	257, 844
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	852
EcoRII	CCWGG	3 cut(s)	426, 576, 796
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	4 cut(s)	158, 479, 898, 936
FatI	CATG	4 cut(s)	154, 475, 894, 932
FokI	GGATG	5 cut(s)	44, 86, 341, 673, 928
FriOI	GRGCYC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	287
GsaI	CCCAGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	4 cut(s)	192, 243, 665, 853
HapII	CCGG	2 cut(s)	89, 130
HgaI	GACGC	2 cut(s)	179, 485
Hin1II	CATG	4 cut(s)	158, 479, 898, 936
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	3 cut(s)	178, 308, 872
HpaII	CCGG	2 cut(s)	89, 130
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	4 cut(s)	141, 169, 449, 821
Hpy188I	TCNGA	6 cut(s)	111, 123, 276, 570, 625, 700
Hpy188III	TCNNGA	2 cut(s)	365, 393
Hpy8I	GTNNAC	4 cut(s)	141, 169, 449, 821
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	4 cut(s)	281, 319, 512, 865
HpyCH4III	ACNGT	2 cut(s)	540, 653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 481, 490, 563, 587, 590
HpyF3I	CTNAG	6 cut(s)	134, 180, 210, 435, 609, 883
Hsp92II	CATG	4 cut(s)	158, 479, 898, 936
Kzo9I	GATC	3 cut(s)	65, 118, 399
LmnI	GCTCC	2 cut(s)	148, 156
LweI	GCATC	2 cut(s)	85, 759
MabI	ACCWGGT	1 cut(s)	426
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	175, 430
MalI	GATC	3 cut(s)	67, 120, 401
MboI	GATC	3 cut(s)	65, 118, 399
MboII	GAAGA	5 cut(s)	369, 480, 626, 850, 850
MfeI	CAATTG	1 cut(s)	757
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	3 cut(s)	51, 153, 733
MluCI	AATT	2 cut(s)	702, 757
MlyI	GAGTC	2 cut(s)	172, 866
MmeI	TCCRAC	2 cut(s)	9, 51
MnlI	CCTC	7 cut(s)	129, 153, 397, 430, 481, 880, 891
MseI	TTAA	2 cut(s)	303, 636
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	2 cut(s)	89, 130
MspR9I	CCNGG	5 cut(s)	90, 130, 428, 578, 798
MunI	CAATTG	1 cut(s)	757
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	3 cut(s)	428, 578, 798
MwoI	GCNNNNNNNGC	6 cut(s)	22, 481, 490, 563, 587, 590
NciI	CCSGG	2 cut(s)	90, 130
NdeII	GATC	3 cut(s)	65, 118, 399
NlaIII	CATG	4 cut(s)	158, 479, 898, 936
NlaIV	GGNNCC	2 cut(s)	120, 666
NmuCI	GTSAC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	243
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	308
PleI	GAGTC	2 cut(s)	172, 866
PpsI	GAGTC	2 cut(s)	172, 866
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	3 cut(s)	426, 576, 796
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	3 cut(s)	426, 576, 796
PspN4I	GGNNCC	2 cut(s)	120, 666
PspPI	GGNCC	3 cut(s)	191, 664, 852
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	484
RsaI	GTAC	5 cut(s)	5, 79, 450, 533, 741
RsaNI	GTAC	5 cut(s)	4, 78, 449, 532, 740
RseI	CAYNNNNRTG	1 cut(s)	683
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	303, 636
Sau3AI	GATC	3 cut(s)	65, 118, 399
Sau96I	GGNCC	3 cut(s)	191, 664, 852
SchI	GAGTC	2 cut(s)	172, 866
ScrFI	CCNGG	5 cut(s)	90, 130, 428, 578, 798
SduI	GDGCHC	3 cut(s)	51, 153, 733
SexAI	ACCWGGT	1 cut(s)	426
SfaNI	GCATC	2 cut(s)	85, 759
SfcI	CTRYAG	2 cut(s)	536, 708
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	2 cut(s)	702, 757
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	146
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	5 cut(s)	88, 128, 426, 576, 796
TaaI	ACNGT	2 cut(s)	540, 653
TaqI	TCGA	2 cut(s)	283, 323
TasI	AATT	2 cut(s)	702, 757
TatI	WGTACW	3 cut(s)	3, 448, 739
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	303, 636
Tru9I	TTAA	2 cut(s)	303, 636
TscAI	CASTG	5 cut(s)	67, 376, 652, 675, 828
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	851
TspGWI	ACGGA	2 cut(s)	66, 131
TspRI	CASTG	5 cut(s)	67, 376, 652, 675, 828
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.