Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Reverse (-)

33313639 .. 33318033

Gene Structure 4395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG193000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCCAAAAGCTGAGCTCATCTCCGCTCACCTCGCATGCCTTTGTTTTACTCATAACCAATATTCTCTCTCTTACGCACTTCAAAGCTCACACCCCCATTTCCTCCAATCCTGTACTTGCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCTCTGCAACTCTCGGGGCTCCGAGCCCCGAATCCCAGGGAAGCTTGAGAGAATGTACTCTGCTTTGCATTCTCTGCCGTTGGATGGGGGTGTTTGTGGGCACGGAGAGTTCAGTGGATCGTTGGATGGTACAAACCTGCCGGGGGATGCTTGCTTGGTTCTGACTACGGATCCGAAGCCCCGGCTGAGGTGGACGGCGGAGCTCCATGAGAGGTTTGTGGACGCTGTGACTCAGCTTGGTGGCCCTGACAAAGCGACACCTAAGACCATTATGAGAACAATGGGAGTAAAAGGCCTTACCCTATATCACTTGAAATCACACCTTCAGAAATATCGACTAGGGAAGCAATCGTTTAAAGAATCAACTGAAAACTCGAAGGATGTTGGGATTGCAGCTTCTTGCATTGCTGAAAGTCAGGACACTGGGTCTTCGGCAACCTCATCAAGAGTGATCGCCCAAGATTTGAATGATGGCTACCAGGTTACTGAGGCTTTGCGTGTACAAATGGAAGTGCAAAGAAGACTGCATGAGCAGCTGGAGGTGCAGCGTCGCCTTCAACTTCGTATTGAAGCACAGGGAAAGTACCTACAGTCTATACTTGAGAAAGCTTGTAAGGCTCTGAATGACCAGGCTGCAACTGCTGCTGGGCTTGAAGCTGCTAAGGAAGAACTCTCTGAACTTGCTATTAAGGTTTCCAGTGACTGTCAAGGGATGGCCCCACTTGATACCATAAAAATGCAGTCCTTGTCTGAAATTGCTGCAGCGATAGAGAACAAAAGTGCCCCAAATGTACTGGCTCACATCGGCAATTGCTCTGTTGATAGCTGCTTGACATCAACTGGAAGCCCTGGTTCTCCAATGGGTATGAGTTCACTGGCTGCTGCCATGAAGAAAAGGCAAAGGCCCTTCTTCAGCAATGGAGACTCGTTGCCCTTCGAGGGCAACATGAGGCAAGAAGTAGAATGGATGATGAGTAATATAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

379

Amino Acids

41.23

Weight (kDa)

6.83

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	112 - 163	2.2e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	211 - 257	1.5e-26	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	26
AciI	CCGC	2 cut(s)	24, 350
AclWI	GGATC	3 cut(s)	277, 317, 330
AcuI	CTGAAG	2 cut(s)	461, 1048
AfaI	GTAC	6 cut(s)	115, 209, 283, 654, 737, 945
AfiI	CCNNNNNNNGG	4 cut(s)	236, 295, 339, 1091
AgsI	TTSAA	6 cut(s)	83, 466, 619, 710, 722, 806
AhdI	GACNNNNNGTC	1 cut(s)	577
AjnI	CCWGG	4 cut(s)	187, 630, 780, 1000
Alw21I	GWGCWC	2 cut(s)	18, 357
Alw26I	GTCTC	1 cut(s)	1068
AlwI	GGATC	3 cut(s)	277, 317, 330
AlwNI	CAGNNNCTG	1 cut(s)	855
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	4 cut(s)	394, 445, 867, 1055
AspS9I	GGNCC	3 cut(s)	395, 868, 1056
AsuC2I	CCSGG	2 cut(s)	294, 334
AsuHPI	GGTGA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	165
BaeGI	GKGCMC	2 cut(s)	255, 937
BamHI	GGATCC	1 cut(s)	322
BanII	GRGCYC	4 cut(s)	18, 173, 180, 357
BbsI	GAAGAC	2 cut(s)	573, 679
Bbv12I	GWGCWC	2 cut(s)	18, 357
BbvCI	CCTCAGC	1 cut(s)	338
BccI	CCATC	4 cut(s)	230, 272, 617, 859
BceAI	ACGGC	2 cut(s)	214, 363
BciT130I	CCWGG	4 cut(s)	189, 632, 782, 1002
BcnI	CCSGG	2 cut(s)	294, 334
BcoDI	GTCTC	1 cut(s)	1068
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	2 cut(s)	740, 912
BfuAI	ACCTGC	1 cut(s)	297
BlpI	GCTNAGC	1 cut(s)	12
Bme1390I	CCNGG	6 cut(s)	189, 294, 334, 632, 782, 1002
BmeRI	GACNNNNNGTC	1 cut(s)	577
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	395, 868, 1056
BmiI	GGNNCC	3 cut(s)	172, 324, 870
BmrFI	CCNGG	6 cut(s)	189, 294, 334, 632, 782, 1002
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	2 cut(s)	573, 679
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	710
Bpu10I	CCTNAGC	2 cut(s)	338, 813
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	218, 773
BpuMI	CCSGG	2 cut(s)	294, 334
BsaJI	CCNNGG	5 cut(s)	187, 188, 293, 332, 1000
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 295, 339, 1091
Bse1I	ACTGG	5 cut(s)	580, 849, 951, 997, 1032
Bse3DI	GCAATG	2 cut(s)	555, 1075
BseBI	CCWGG	4 cut(s)	189, 632, 782, 1002
BseDI	CCNNGG	5 cut(s)	187, 188, 293, 332, 1000
BseGI	GGATG	6 cut(s)	241, 283, 304, 538, 870, 1125
BseLI	CCNNNNNNNGG	4 cut(s)	236, 295, 339, 1091
BseMI	GCAATG	2 cut(s)	555, 1075
BseMII	CTCAG	3 cut(s)	329, 398, 630
BseNI	ACTGG	5 cut(s)	580, 849, 951, 997, 1032
BseRI	GAGGAG	8 cut(s)	116, 119, 122, 125, 128, 131, 134, 137
BseSI	GKGCMC	2 cut(s)	255, 937
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	716
BshFI	GGCC	4 cut(s)	396, 447, 869, 1057
BsiHKAI	GWGCWC	2 cut(s)	18, 357
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	293, 334
BslI	CCNNNNNNNGG	4 cut(s)	236, 295, 339, 1091
BsmAI	GTCTC	1 cut(s)	1068
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	396, 447, 869, 1057
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	6 cut(s)	18, 173, 180, 255, 357, 937
Bsp1407I	TGTACA	1 cut(s)	652
Bsp143I	GATC	3 cut(s)	269, 322, 603
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	2 cut(s)	24, 350
BspANI	GGCC	4 cut(s)	396, 447, 869, 1057
BspCNI	CTCAG	4 cut(s)	4, 330, 397, 631
BspLI	GGNNCC	3 cut(s)	172, 324, 870
BspMAI	CTGCAG	1 cut(s)	916
BspMI	ACCTGC	1 cut(s)	297
BspPI	GGATC	3 cut(s)	277, 317, 330
BsrBI	CCGCTC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	555, 1075
BsrGI	TGTACA	1 cut(s)	652
BsrI	ACTGG	5 cut(s)	580, 849, 951, 997, 1032
BssECI	CCNNGG	5 cut(s)	187, 188, 293, 332, 1000
BssMI	GATC	3 cut(s)	269, 322, 603
Bst2UI	CCWGG	4 cut(s)	189, 632, 782, 1002
Bst4CI	ACNGT	2 cut(s)	744, 857
BstAPI	GCANNNNNTGC	2 cut(s)	226, 794
BstAUI	TGTACA	1 cut(s)	652
BstC8I	GCNNGC	2 cut(s)	37, 304
BstDEI	CTNAG	6 cut(s)	12, 338, 384, 414, 639, 813
BstF5I	GGATG	6 cut(s)	241, 283, 304, 538, 870, 1125
BstKTI	GATC	3 cut(s)	272, 325, 606
BstMAI	GTCTC	1 cut(s)	1068
BstMBI	GATC	3 cut(s)	269, 322, 603
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 226, 685, 694, 767, 791, 794
BstNI	CCWGG	4 cut(s)	189, 632, 782, 1002
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	6 cut(s)	187, 292, 332, 630, 780, 1000
BstSFI	CTRYAG	2 cut(s)	740, 912
BstSLI	GKGCMC	2 cut(s)	255, 937
BstV2I	GAAGAC	2 cut(s)	573, 679
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	4 cut(s)	396, 447, 869, 1057
BtsCI	GGATG	6 cut(s)	241, 283, 304, 538, 870, 1125
BtsIMutI	CAGTG	4 cut(s)	271, 573, 856, 1025
BveI	ACCTGC	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	37, 304
CaiI	CAGNNNCTG	1 cut(s)	855
Cfr13I	GGNCC	3 cut(s)	395, 868, 1056
CseI	GACGC	2 cut(s)	383, 689
CsiI	ACCWGGT	1 cut(s)	630
Csp6I	GTAC	6 cut(s)	114, 208, 282, 653, 736, 944
CviAII	CATG	6 cut(s)	36, 359, 680, 1039, 1099, 1137
CviQI	GTAC	6 cut(s)	114, 208, 282, 653, 736, 944
DdeI	CTNAG	6 cut(s)	12, 338, 384, 414, 639, 813
DpnI	GATC	3 cut(s)	271, 324, 605
DpnII	GATC	3 cut(s)	269, 322, 603
DraI	TTTAAA	1 cut(s)	508
DriI	GACNNNNNGTC	1 cut(s)	577
Eam1105I	GACNNNNNGTC	1 cut(s)	577
EciI	GGCGGA	1 cut(s)	365
Ecl136II	GAGCTC	2 cut(s)	16, 355
Eco147I	AGGCCT	1 cut(s)	447
Eco24I	GRGCYC	4 cut(s)	18, 173, 180, 357
Eco53kI	GAGCTC	2 cut(s)	16, 355
Eco57I	CTGAAG	2 cut(s)	461, 1048
Eco88I	CYCGRG	1 cut(s)	165
EcoICRI	GAGCTC	2 cut(s)	16, 355
EcoO109I	RGGNCCY	1 cut(s)	1056
EcoRII	CCWGG	4 cut(s)	187, 630, 780, 1000
EcoT38I	GRGCYC	4 cut(s)	18, 173, 180, 357
FaeI	CATG	6 cut(s)	39, 362, 683, 1042, 1102, 1140
FatI	CATG	6 cut(s)	35, 358, 679, 1038, 1098, 1136
FokI	GGATG	6 cut(s)	248, 290, 311, 545, 877, 1132
FriOI	GRGCYC	4 cut(s)	18, 173, 180, 357
FspBI	CTAG	1 cut(s)	491
GsaI	CCCAGC	1 cut(s)	801
GsuI	CTGGAG	1 cut(s)	710
HaeIII	GGCC	4 cut(s)	396, 447, 869, 1057
HapII	CCGG	2 cut(s)	293, 334
HgaI	GACGC	2 cut(s)	383, 689
Hin1II	CATG	6 cut(s)	39, 362, 683, 1042, 1102, 1140
HindIII	AAGCTT	2 cut(s)	194, 759
HinfI	GANTC	4 cut(s)	183, 382, 512, 1076
HpaII	CCGG	2 cut(s)	293, 334
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	4 cut(s)	345, 373, 653, 1025
Hpy188I	TCNGA	7 cut(s)	175, 315, 327, 480, 774, 829, 904
Hpy188III	TCNNGA	2 cut(s)	569, 597
Hpy8I	GTNNAC	4 cut(s)	345, 373, 653, 1025
Hpy99I	CGWCG	1 cut(s)	705
HpyAV	CCTTC	5 cut(s)	485, 523, 716, 1069, 1096
HpyCH4III	ACNGT	2 cut(s)	744, 857
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 226, 685, 694, 767, 791, 794
HpyF3I	CTNAG	6 cut(s)	12, 338, 384, 414, 639, 813
Hsp92II	CATG	6 cut(s)	39, 362, 683, 1042, 1102, 1140
Kzo9I	GATC	3 cut(s)	269, 322, 603
LmnI	GCTCC	3 cut(s)	176, 352, 360
LweI	GCATC	1 cut(s)	289
MabI	ACCWGGT	1 cut(s)	630
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	3 cut(s)	379, 634, 851
MalI	GATC	3 cut(s)	271, 324, 605
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	3 cut(s)	269, 322, 603
MboII	GAAGA	5 cut(s)	573, 684, 830, 1054, 1054
MfeI	CAATTG	1 cut(s)	961
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	6 cut(s)	18, 173, 180, 255, 357, 937
MluCI	AATT	2 cut(s)	906, 961
MlyI	GAGTC	2 cut(s)	376, 1070
MmeI	TCCRAC	2 cut(s)	213, 255
MseI	TTAA	2 cut(s)	507, 840
MslI	CAYNNNNRTG	1 cut(s)	887
MspA1I	CMGCKG	1 cut(s)	688
MspI	CCGG	2 cut(s)	293, 334
MspR9I	CCNGG	6 cut(s)	189, 294, 334, 632, 782, 1002
MunI	CAATTG	1 cut(s)	961
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	4 cut(s)	189, 632, 782, 1002
MwoI	GCNNNNNNNGC	7 cut(s)	32, 226, 685, 694, 767, 791, 794
NciI	CCSGG	2 cut(s)	294, 334
NdeII	GATC	3 cut(s)	269, 322, 603
NlaIII	CATG	6 cut(s)	39, 362, 683, 1042, 1102, 1140
NlaIV	GGNNCC	3 cut(s)	172, 324, 870
NmuCI	GTSAC	2 cut(s)	379, 851
NspI	RCATGY	1 cut(s)	39
PaeI	GCATGC	1 cut(s)	39
PasI	CCCWGGG	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	447
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	183, 512
PleI	GAGTC	2 cut(s)	376, 1070
PpsI	GAGTC	2 cut(s)	376, 1070
Psp124BI	GAGCTC	2 cut(s)	18, 357
Psp6I	CCWGG	4 cut(s)	187, 630, 780, 1000
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	4 cut(s)	187, 630, 780, 1000
PspN4I	GGNNCC	3 cut(s)	172, 324, 870
PspPI	GGNCC	3 cut(s)	395, 868, 1056
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	855
PsuI	RGATCY	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	688
RsaI	GTAC	6 cut(s)	115, 209, 283, 654, 737, 945
RsaNI	GTAC	6 cut(s)	114, 208, 282, 653, 736, 944
RseI	CAYNNNNRTG	1 cut(s)	887
SacI	GAGCTC	2 cut(s)	18, 357
SaqAI	TTAA	2 cut(s)	507, 840
Sau3AI	GATC	3 cut(s)	269, 322, 603
Sau96I	GGNCC	3 cut(s)	395, 868, 1056
SchI	GAGTC	2 cut(s)	376, 1070
ScrFI	CCNGG	6 cut(s)	189, 294, 334, 632, 782, 1002
SduI	GDGCHC	6 cut(s)	18, 173, 180, 255, 357, 937
SexAI	ACCWGGT	1 cut(s)	630
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	2 cut(s)	740, 912
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	2 cut(s)	197, 752
SmoI	CTYRAG	2 cut(s)	197, 752
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	2 cut(s)	906, 961
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	2 cut(s)	24, 350
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	491
SstI	GAGCTC	2 cut(s)	18, 357
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	6 cut(s)	187, 292, 332, 630, 780, 1000
TaaI	ACNGT	2 cut(s)	744, 857
TaqI	TCGA	3 cut(s)	487, 527, 1089
TasI	AATT	2 cut(s)	906, 961
TatI	WGTACW	4 cut(s)	113, 207, 652, 943
TfiI	GAWTC	2 cut(s)	183, 512
Tru1I	TTAA	2 cut(s)	507, 840
Tru9I	TTAA	2 cut(s)	507, 840
TscAI	CASTG	4 cut(s)	271, 580, 856, 1032
TseFI	GTSAC	2 cut(s)	379, 851
Tsp45I	GTSAC	2 cut(s)	379, 851
TspDTI	ATGAA	1 cut(s)	1055
TspGWI	ACGGA	2 cut(s)	270, 335
TspRI	CASTG	4 cut(s)	271, 580, 856, 1032
XceI	RCATGY	1 cut(s)	39
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.