Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Forward (+)

968359 .. 973401

Gene Structure 5043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1008300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTACTCTGCTATCCATTCTCTGCCGTTGGATGGGCATGGAGACTTTGGTGGGTCGTTGGATGGTACCAACCTGCCCGGTGATGCTTGCTTGGTTCTGACTACGGATCCAAAGCCCCGGCTGCGGTGGACGGCGGAGCTCCATGAGAGGTTTGTGGATGCTGTGACTCAACTTGGTGGCCCTGACAAAGCAACACCTAAGACCATTATGAGAACAATGGGAGTCAAAGGCCTTACCCTTTATCACTTGAAATCTCATCTTCAGAAATATCGATTGGGGAAGCTATCGTGCAAAGATTCAGCTGAAAACTCCAAGGATGGGATTGCAGCCTCTTGTATAGCTGAAAGCCAGGACACTGGTTCATCCTCGGCGGTCTCATCAAGAGTGATTGCGCAAGATTTGAATGATGGCTACCAGGTTACTGAGGCTTTGCGAGTACAAATGGAAGTCCAACGGAGACTGCATGAGCAGCTGGAGGTGCAGCGTCGTCTTCAACTTCGAATTGAAGCACAGAGCAAGTATCTTCAGTCTATACTTGAGAAAGCTTGTAAGGCTCTGAATGACCAGGCTGCCACAGCCGCTGGGGTTGAAGCTGCTAAGGAGGAACTCTCTGAACTAGCTATTCGGGTTTCCAATGACTGTGAAGGGATAGTCCCACTTGATTCCACAAAAATCCCTTCATTGTCGGAAATTGCTGCCGCTTTAGAGAACAGAGATGTCTCCAATGTAATGGCTCACCTCGGCAACTGCTCTGTTGATAGCTGCTTGACATCAACCGGAAGCCCTGTTTTGCCAATGGATATGAGTTCACTCGCTGCTGCTATGAAGAAAAGACAAAGACCCTTCTTCGGTAATGGAGACTCGTTGCCTTTGGAGAGCAACATGAGGCAGGAAGTCGAATGGATGATGAGTAATATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

308

Amino Acids

33.32

Weight (kDa)

5.7

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	40 - 91	1.6e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	139 - 185	8.4e-26	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	81
Acc65I	GGTACC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	5 cut(s)	124, 134, 371, 579, 699
AclWI	GGATC	2 cut(s)	101, 114
AcuI	CTGAAG	2 cut(s)	245, 509
AfaI	GTAC	3 cut(s)	5, 67, 438
AfiI	CCNNNNNNNGG	4 cut(s)	32, 123, 318, 848
AgsI	TTSAA	5 cut(s)	250, 403, 494, 506, 590
AjnI	CCWGG	3 cut(s)	348, 414, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	9 cut(s)	139, 283, 302, 341, 472, 545, 593, 620, 762
AluI	AGCT	9 cut(s)	139, 283, 302, 341, 472, 545, 593, 620, 762
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	5 cut(s)	36, 379, 451, 724, 852
AlwI	GGATC	2 cut(s)	101, 114
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	2 cut(s)	178, 229
Asp718I	GGTACC	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	2 cut(s)	78, 118
AsuHPI	GGTGA	2 cut(s)	92, 728
AsuII	TTCGAA	1 cut(s)	499
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	4 cut(s)	26, 56, 311, 401
BceAI	ACGGC	2 cut(s)	10, 147
BciT130I	CCWGG	3 cut(s)	350, 416, 566
BcnI	CCSGG	2 cut(s)	78, 118
BcoDI	GTCTC	5 cut(s)	36, 379, 451, 724, 852
BfaI	CTAG	1 cut(s)	617
BfuAI	ACCTGC	1 cut(s)	81
Bme1390I	CCNGG	5 cut(s)	78, 118, 350, 416, 566
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	67, 108
BmrFI	CCNGG	5 cut(s)	78, 118, 350, 416, 566
BmsI	GCATC	2 cut(s)	73, 148
BpiI	GAAGAC	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	78, 118
Bsa29I	ATCGAT	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	4 cut(s)	116, 312, 366, 739
BsaWI	WCCGGW	1 cut(s)	776
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 123, 318, 848
Bse1I	ACTGG	1 cut(s)	361
BseBI	CCWGG	3 cut(s)	350, 416, 566
BseCI	ATCGAT	1 cut(s)	271
BseDI	CCNNGG	4 cut(s)	116, 312, 366, 739
BseGI	GGATG	6 cut(s)	37, 67, 163, 322, 362, 909
BseLI	CCNNNNNNNGG	4 cut(s)	32, 123, 318, 848
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	2 cut(s)	180, 231
BshNI	GGYRCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	78, 118, 777
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	4 cut(s)	32, 123, 318, 848
BsmAI	GTCTC	5 cut(s)	36, 379, 451, 724, 852
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	180, 231
Bso31I	GGTCTC	1 cut(s)	379
Bsp119I	TTCGAA	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	5 cut(s)	124, 134, 371, 579, 699
BspANI	GGCC	2 cut(s)	180, 231
BspCNI	CTCAG	1 cut(s)	415
BspDI	ATCGAT	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	67, 108
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	101, 114
BspT104I	TTCGAA	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	4 cut(s)	116, 312, 366, 739
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	3 cut(s)	350, 416, 566
Bst4CI	ACNGT	1 cut(s)	641
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	3 cut(s)	198, 423, 597
BstF5I	GGATG	6 cut(s)	37, 67, 163, 322, 362, 909
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	5 cut(s)	36, 379, 451, 724, 852
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 469, 478, 551, 575, 578
BstNI	CCWGG	3 cut(s)	350, 416, 566
BstSCI	CCNGG	5 cut(s)	76, 116, 348, 414, 564
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	106
BstXI	CCANNNNNNTGG	2 cut(s)	356, 730
BstYI	RGATCY	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	180, 231
BsuTUI	ATCGAT	1 cut(s)	271
BtsCI	GGATG	6 cut(s)	37, 67, 163, 322, 362, 909
BtsIMutI	CAGTG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	581
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	271
CseI	GACGC	1 cut(s)	473
CsiI	ACCWGGT	1 cut(s)	414
Csp6I	GTAC	3 cut(s)	4, 66, 437
CviAII	CATG	4 cut(s)	38, 143, 464, 883
CviQI	GTAC	3 cut(s)	4, 66, 437
DdeI	CTNAG	3 cut(s)	198, 423, 597
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	379
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	245, 509
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	3 cut(s)	348, 414, 564
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	4 cut(s)	41, 146, 467, 886
FaiI	YATR	9 cut(s)	39, 144, 209, 338, 465, 533, 803, 824, 884
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	4 cut(s)	37, 142, 463, 882
FokI	GGATG	6 cut(s)	44, 74, 170, 329, 349, 916
FriOI	GRGCYC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	617
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	1 cut(s)	393
GsaI	CCCAGC	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	2 cut(s)	180, 231
HapII	CCGG	3 cut(s)	78, 118, 777
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	4 cut(s)	41, 146, 467, 886
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	5 cut(s)	166, 222, 296, 662, 860
HpaII	CCGG	3 cut(s)	78, 118, 777
HphI	GGTGA	2 cut(s)	92, 728
Hpy166II	GTNNAC	2 cut(s)	129, 809
Hpy188I	TCNGA	5 cut(s)	99, 264, 558, 613, 688
Hpy188III	TCNNGA	1 cut(s)	381
Hpy8I	GTNNAC	2 cut(s)	129, 809
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	638, 687, 853
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4V	TGCA	4 cut(s)	291, 326, 463, 481
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 469, 478, 551, 575, 578
HpyF3I	CTNAG	3 cut(s)	198, 423, 597
Hsp92II	CATG	4 cut(s)	41, 146, 467, 886
HspAI	GCGC	1 cut(s)	392
KpnI	GGTACC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	136, 144
LweI	GCATC	2 cut(s)	73, 148
MabI	ACCWGGT	1 cut(s)	414
MaeI	CTAG	1 cut(s)	617
MaeIII	GTNAC	2 cut(s)	163, 418
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	5 cut(s)	251, 482, 515, 838, 838
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	2 cut(s)	501, 690
MlyI	GAGTC	3 cut(s)	160, 231, 854
MmeI	TCCRAC	4 cut(s)	9, 39, 475, 666
MnlI	CCTC	8 cut(s)	141, 340, 376, 418, 469, 595, 749, 879
MspA1I	CMGCKG	3 cut(s)	302, 472, 581
MspI	CCGG	3 cut(s)	78, 118, 777
MspR9I	CCNGG	5 cut(s)	78, 118, 350, 416, 566
MvaI	CCWGG	3 cut(s)	350, 416, 566
MwoI	GCNNNNNNNGC	6 cut(s)	121, 469, 478, 551, 575, 578
NciI	CCSGG	2 cut(s)	78, 118
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	4 cut(s)	41, 146, 467, 886
NlaIV	GGNNCC	2 cut(s)	67, 108
NmeAIII	GCCGAG	2 cut(s)	347, 720
NmuCI	GTSAC	1 cut(s)	163
NsbI	TGCGCA	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	296, 662
PleI	GAGTC	3 cut(s)	160, 230, 854
PpsI	GAGTC	3 cut(s)	160, 230, 854
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	3 cut(s)	348, 414, 564
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	3 cut(s)	348, 414, 564
PspN4I	GGNNCC	2 cut(s)	67, 108
PspPI	GGNCC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	106
PvuII	CAGCTG	2 cut(s)	302, 472
RsaI	GTAC	3 cut(s)	5, 67, 438
RsaNI	GTAC	3 cut(s)	4, 66, 437
SacI	GAGCTC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	3 cut(s)	160, 231, 854
ScrFI	CCNGG	5 cut(s)	78, 118, 350, 416, 566
SduI	GDGCHC	1 cut(s)	141
SexAI	ACCWGGT	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	73, 148
SfuI	TTCGAA	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	501, 690
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	5 cut(s)	124, 134, 371, 579, 699
SspI	AATATT	1 cut(s)	916
SspMI	CTAG	1 cut(s)	617
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	5 cut(s)	76, 116, 348, 414, 564
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	641
TaqI	TCGA	3 cut(s)	271, 499, 897
TasI	AATT	2 cut(s)	501, 690
TatI	WGTACW	2 cut(s)	3, 436
TauI	GCSGC	2 cut(s)	581, 701
TfiI	GAWTC	2 cut(s)	296, 662
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	351, 669, 839
TspGWI	ACGGA	2 cut(s)	119, 469
TspRI	CASTG	1 cut(s)	361
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.