Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Forward (+)

1951569 .. 1953733

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g01410.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGAACATTGGGAGTTAAAGGCCTTACCCTTTATCACTTGAAATCGCATCTTCAGAAATATCGATTGGGGAAGCAATCATGCAAAGATTCAGCTGAAATCTCCAAGGATGGGATTGCAGCTTCTTGTATTGCTGAAAGCCAGGACACTGGTTCATCCTCGGCAACCTCATCAAGAGTGATTGCGGAAGATTTGAATGATGGCTTCCAGGTTACTGAGGCTTTGCGAGTACAAATGGAAGTCCAACGGAGACTGCATGAGCAGCTGGAGGTGCAGTGTCGTCTTCAACTTCGAATTGAAGCACAGAGCAAGTATCTTCAGTCTATACTTGAGAAAGCTTGTAAGGCTCTGAAAGACCAGGCTACCTCAGCCACTGGGCTTGAAGCTGCTAAGGAGGAACTCTCTGAACTAGCTATTGGGGTTTCCAATGACTCTGAAGGGATAGTCCTACTTCACTCTGCAAAAATGCCTTCATTGTCGGAACTTGCTGCCGCTCTAGAGAACAGAGATGCCTCCAATGTAATGGTTTGCCTCGGCAACTGCTCTGTTGATAGCTGCTTGACATCAACCGGAAGCCCTGTTTTGCCAATGGATATGAGTTCACTGGCTGCTGCTATGAAGAAAAGACAAAGGCCCTTCTTCGGTAACGGAGACTCATTGCCTTTGGAGAGCAACATGAGGCAGGAAGTCGAATGGATCATGAGTAATACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

239

Amino Acids

25.81

Weight (kDa)

5.67

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	494
AciI	CCGC	2 cut(s)	185, 492
AclWI	GGATC	1 cut(s)	704
AcuI	CTGAAG	3 cut(s)	38, 302, 456
AfaI	GTAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	111, 641
AgsI	TTSAA	5 cut(s)	43, 196, 287, 299, 383
AjnI	CCWGG	3 cut(s)	141, 207, 357
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 399, 431
AluBI	AGCT	7 cut(s)	95, 122, 265, 338, 386, 413, 555
AluI	AGCT	7 cut(s)	95, 122, 265, 338, 386, 413, 555
Alw26I	GTCTC	2 cut(s)	244, 645
AlwI	GGATC	1 cut(s)	704
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	22, 632
ApeKI	GCWGC	7 cut(s)	119, 262, 386, 488, 555, 608, 611
AspS9I	GGNCC	1 cut(s)	633
AsuII	TTCGAA	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	367
BbvI	GCAGC	7 cut(s)	131, 274, 373, 475, 542, 595, 598
BccI	CCATC	2 cut(s)	104, 194
BciT130I	CCWGG	3 cut(s)	143, 209, 359
BcoDI	GTCTC	2 cut(s)	244, 645
BfaI	CTAG	2 cut(s)	410, 497
BisI	GCNGC	8 cut(s)	120, 263, 387, 489, 492, 556, 609, 612
BlsI	GCNGC	8 cut(s)	121, 264, 388, 490, 493, 557, 610, 613
Bme1390I	CCNGG	3 cut(s)	143, 209, 359
BmgT120I	GGNCC	1 cut(s)	633
BmrFI	CCNGG	3 cut(s)	143, 209, 359
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	58, 499
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	287
Bpu10I	CCTNAGC	2 cut(s)	367, 390
Bpu14I	TTCGAA	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	105, 159, 532
BsaWI	WCCGGW	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 641
Bse1I	ACTGG	4 cut(s)	154, 379, 609, 715
Bse3DI	GCAATG	1 cut(s)	656
BseBI	CCWGG	3 cut(s)	143, 209, 359
BseCI	ATCGAT	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	105, 159, 532
BseGI	GGATG	2 cut(s)	115, 155
BseLI	CCNNNNNNNGG	2 cut(s)	111, 641
BseMI	GCAATG	1 cut(s)	656
BseMII	CTCAG	2 cut(s)	207, 381
BseNI	ACTGG	4 cut(s)	154, 379, 609, 715
BseXI	GCAGC	7 cut(s)	131, 274, 373, 475, 542, 595, 598
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	24, 634
BshVI	ATCGAT	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	111, 641
BsmAI	GTCTC	2 cut(s)	244, 645
BsnI	GGCC	2 cut(s)	24, 634
Bsp119I	TTCGAA	1 cut(s)	292
Bsp143I	GATC	1 cut(s)	696
BspACI	CCGC	2 cut(s)	185, 492
BspANI	GGCC	2 cut(s)	24, 634
BspCNI	CTCAG	2 cut(s)	208, 380
BspDI	ATCGAT	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	699
BspPI	GGATC	1 cut(s)	704
BspT104I	TTCGAA	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	656
BsrI	ACTGG	4 cut(s)	154, 379, 609, 715
BssECI	CCNNGG	3 cut(s)	105, 159, 532
BssMI	GATC	1 cut(s)	696
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	3 cut(s)	143, 209, 359
BstBI	TTCGAA	1 cut(s)	292
BstDEI	CTNAG	3 cut(s)	216, 367, 390
BstF5I	GGATG	2 cut(s)	115, 155
BstKTI	GATC	1 cut(s)	699
BstMAI	GTCTC	2 cut(s)	244, 645
BstMBI	GATC	1 cut(s)	696
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 271, 344, 368
BstNI	CCWGG	3 cut(s)	143, 209, 359
BstSCI	CCNGG	3 cut(s)	141, 207, 357
BstV1I	GCAGC	7 cut(s)	131, 274, 373, 475, 542, 595, 598
BstV2I	GAAGAC	1 cut(s)	275
BstXI	CCANNNNNNTGG	2 cut(s)	149, 523
Bsu15I	ATCGAT	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	24, 634
BsuTUI	ATCGAT	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	115, 155
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	4 cut(s)	147, 281, 372, 602
CaiI	CAGNNNCTG	1 cut(s)	374
CciI	TCATGA	1 cut(s)	699
Cfr13I	GGNCC	1 cut(s)	633
ClaI	ATCGAT	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	230
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	4 cut(s)	81, 257, 676, 700
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	3 cut(s)	216, 367, 390
DpnI	GATC	1 cut(s)	698
DpnII	GATC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	24
Eco57I	CTGAAG	3 cut(s)	38, 302, 456
EcoO109I	RGGNCCY	1 cut(s)	633
EcoRII	CCWGG	3 cut(s)	141, 207, 357
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	4 cut(s)	84, 260, 679, 703
FaiI	YATR	7 cut(s)	82, 258, 326, 596, 617, 677, 701
FatI	CATG	4 cut(s)	80, 256, 675, 699
Fnu4HI	GCNGC	8 cut(s)	120, 263, 387, 489, 492, 556, 609, 612
FokI	GGATG	2 cut(s)	122, 142
Fsp4HI	GCNGC	8 cut(s)	120, 263, 387, 489, 492, 556, 609, 612
FspBI	CTAG	2 cut(s)	410, 497
GluI	GCNGC	8 cut(s)	120, 263, 387, 489, 492, 556, 609, 612
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	24, 634
HapII	CCGG	1 cut(s)	570
Hin1II	CATG	4 cut(s)	84, 260, 679, 703
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	3 cut(s)	89, 431, 653
HpaII	CCGG	1 cut(s)	570
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	5 cut(s)	57, 351, 406, 436, 481
Hpy188III	TCNNGA	3 cut(s)	174, 497, 700
Hpy8I	GTNNAC	1 cut(s)	602
HpyAV	CCTTC	3 cut(s)	431, 480, 646
HpyCH4V	TGCA	5 cut(s)	84, 119, 256, 274, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 271, 344, 368
HpyF3I	CTNAG	3 cut(s)	216, 367, 390
Hsp92II	CATG	4 cut(s)	84, 260, 679, 703
Kzo9I	GATC	1 cut(s)	696
Lsp1109I	GCAGC	7 cut(s)	131, 274, 373, 475, 542, 595, 598
LweI	GCATC	2 cut(s)	58, 499
MaeI	CTAG	2 cut(s)	410, 497
MaeIII	GTNAC	2 cut(s)	211, 644
MalI	GATC	1 cut(s)	698
MbiI	CCGCTC	1 cut(s)	494
MboI	GATC	1 cut(s)	696
MboII	GAAGA	6 cut(s)	44, 200, 275, 308, 631, 631
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	425, 647
MmeI	TCCRAC	2 cut(s)	268, 459
MnlI	CCTC	9 cut(s)	169, 178, 211, 262, 376, 388, 523, 542, 672
MseI	TTAA	1 cut(s)	18
MspA1I	CMGCKG	2 cut(s)	95, 265
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	3 cut(s)	143, 209, 359
MvaI	CCWGG	3 cut(s)	143, 209, 359
MwoI	GCNNNNNNNGC	4 cut(s)	262, 271, 344, 368
NdeII	GATC	1 cut(s)	696
NlaIII	CATG	4 cut(s)	84, 260, 679, 703
NmeAIII	GCCGAG	2 cut(s)	140, 513
NspV	TTCGAA	1 cut(s)	292
PagI	TCATGA	1 cut(s)	699
PceI	AGGCCT	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	8 cut(s)	121, 264, 388, 490, 493, 557, 610, 613
PleI	GAGTC	2 cut(s)	425, 647
PpsI	GAGTC	2 cut(s)	425, 647
Psp6I	CCWGG	3 cut(s)	141, 207, 357
PspGI	CCWGG	3 cut(s)	141, 207, 357
PspPI	GGNCC	1 cut(s)	633
PstNI	CAGNNNCTG	1 cut(s)	374
PvuII	CAGCTG	2 cut(s)	95, 265
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	8 cut(s)	120, 263, 387, 489, 492, 556, 609, 612
Sau3AI	GATC	1 cut(s)	696
Sau96I	GGNCC	1 cut(s)	633
SchI	GAGTC	2 cut(s)	425, 647
ScrFI	CCNGG	3 cut(s)	143, 209, 359
SfaNI	GCATC	2 cut(s)	58, 499
SfuI	TTCGAA	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	294
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	185, 492
SspMI	CTAG	2 cut(s)	410, 497
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	141, 207, 357
StyI	CCWWGG	1 cut(s)	105
TaqI	TCGA	3 cut(s)	64, 292, 690
TasI	AATT	1 cut(s)	294
TatI	WGTACW	1 cut(s)	229
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	4 cut(s)	154, 281, 379, 609
TseI	GCWGC	7 cut(s)	119, 262, 386, 488, 555, 608, 611
TspDTI	ATGAA	3 cut(s)	144, 462, 632
TspGWI	ACGGA	2 cut(s)	262, 663
TspRI	CASTG	4 cut(s)	154, 281, 379, 609
XbaI	TCTAGA	1 cut(s)	496
XspI	CTAG	2 cut(s)	410, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.