Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Reverse (-)

47743690 .. 47761191

Gene Structure 17502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG194400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAATCGCTCACACCCCCCATTTCCTCCAATCCTGTACTTGCTTCCTCCTCCTCCTCTCCCTCTGCAACTCTCGGGGCTCCGAGCCCCGAATCCCAGGGAAGCTTGAGAATGTACTCTGCTTTGCATTCTCTGCCGTTGGATGGGGGTGTTTGTGGGCACGGAGAGTTCAGTGGATCGTTGGATGGTACAAACCTGCCGGGTGATGCTTGCTTGGTTCTGACTACGGATCCGAAGCCCCGGCTGAGGTGGACGGCGGAGCTCCATGAGAGGTTTGTGGACGCTGTGACTCAGCTTGGTGGCCCTGATAAAGCGACACCTAAGACCATTATGAGAACAATGGGAGTAAAAGGCCTTACCCTATATCACTTGAAATCACACCTTCAGAAATATCGACTAGGGAAGCAATCGTTTAAAGAATCAACTGAAAACTCGAAGGATGCTTCTTGCATTGCTGAAAGTCAGGACACTGGGTCTTCGGCAACCTCATCAAGAGTGATCGCCCAAGATTTGAATGATGGCTACCAGGTTACTGAGGCTTTGCGTGTACAAATGGAAGTGCAAAGAAGACTGCATGAGCAGCTGGAGGTGCAGCGTCGCCTTCAACTTCGTATTGAAGCACAGGGAAAGTACCTACAGTCTATACTTGAGAAAGCTTGTAAGGCTCTGAATGACCAGGCTGCAACTGCTGCTGGGCTTGAAGCTGCTAAGGAAGAACTCTCTGAACTTGCTATTAAGGTTTCCAGCGACTGTCAAGGGATGGCCCCACTTGATACCATAAAAATGCAGTCCTTGTCTGAAATTGCTGCAGCAATAGAGAACAAAAGTGCCCCAAATGTACTGGCTCGCATCGGCAATTGCTCTGTTGATAGCTGCTTGACATCAACTGGAAGCCCTGGTTCTCCAATGGGTATGAGTTCACTGGCTGCTGCTATGAAGAAAAGGCAAAGGCCCTTCTTCAGCAATGGAGACTCGTTGCCTTTAGAGGGCAACATGAGACAAGAAGTAGAATGGATGATGAGTAATATTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

344

Amino Acids

36.87

Weight (kDa)

6.12

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	81 - 132	1.9e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	176 - 222	1.3e-26	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	204
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	3 cut(s)	184, 224, 237
AcuI	CTGAAG	2 cut(s)	368, 943
AfaI	GTAC	6 cut(s)	39, 116, 190, 549, 632, 840
AfiI	CCNNNNNNNGG	3 cut(s)	143, 246, 986
AgsI	TTSAA	5 cut(s)	373, 514, 605, 617, 701
AhdI	GACNNNNNGTC	1 cut(s)	472
AjnI	CCWGG	4 cut(s)	96, 525, 675, 895
AluBI	AGCT	7 cut(s)	105, 262, 295, 583, 656, 704, 873
AluI	AGCT	7 cut(s)	105, 262, 295, 583, 656, 704, 873
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	963, 991
AlwI	GGATC	3 cut(s)	184, 224, 237
AlwNI	CAGNNNCTG	1 cut(s)	750
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	4 cut(s)	301, 352, 762, 950
AspS9I	GGNCC	3 cut(s)	302, 763, 951
AsuC2I	CCSGG	2 cut(s)	201, 241
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	74
BaeGI	GKGCMC	2 cut(s)	162, 832
BamHI	GGATCC	1 cut(s)	229
BanII	GRGCYC	3 cut(s)	82, 89, 264
BbsI	GAAGAC	2 cut(s)	468, 574
Bbv12I	GWGCWC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	245
BccI	CCATC	4 cut(s)	137, 179, 512, 754
BceAI	ACGGC	2 cut(s)	121, 270
BciT130I	CCWGG	4 cut(s)	98, 527, 677, 897
BcnI	CCSGG	2 cut(s)	201, 241
BcoDI	GTCTC	2 cut(s)	963, 991
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	2 cut(s)	635, 807
BfuAI	ACCTGC	1 cut(s)	204
Bme1390I	CCNGG	6 cut(s)	98, 201, 241, 527, 677, 897
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	3 cut(s)	302, 763, 951
BmiI	GGNNCC	3 cut(s)	81, 231, 765
BmrFI	CCNGG	6 cut(s)	98, 201, 241, 527, 677, 897
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	3 cut(s)	196, 430, 858
BmuI	ACTGGG	1 cut(s)	480
BpiI	GAAGAC	2 cut(s)	468, 574
BpmI	CTGGAG	1 cut(s)	605
Bpu10I	CCTNAGC	2 cut(s)	245, 708
BpuEI	CTTGAG	2 cut(s)	127, 668
BpuMI	CCSGG	2 cut(s)	201, 241
BsaJI	CCNNGG	4 cut(s)	96, 97, 239, 895
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 246, 986
Bse1I	ACTGG	4 cut(s)	475, 846, 892, 927
Bse3DI	GCAATG	2 cut(s)	450, 970
BseBI	CCWGG	4 cut(s)	98, 527, 677, 897
BseDI	CCNNGG	4 cut(s)	96, 97, 239, 895
BseGI	GGATG	5 cut(s)	148, 190, 445, 765, 1020
BseLI	CCNNNNNNNGG	3 cut(s)	143, 246, 986
BseMI	GCAATG	2 cut(s)	450, 970
BseMII	CTCAG	3 cut(s)	236, 305, 525
BseNI	ACTGG	4 cut(s)	475, 846, 892, 927
BseRI	GAGGAG	3 cut(s)	40, 43, 46
BseSI	GKGCMC	2 cut(s)	162, 832
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	611
BshFI	GGCC	4 cut(s)	303, 354, 764, 952
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	200, 241
BslI	CCNNNNNNNGG	3 cut(s)	143, 246, 986
BsmAI	GTCTC	2 cut(s)	963, 991
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	4 cut(s)	303, 354, 764, 952
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	5 cut(s)	82, 89, 162, 264, 832
Bsp1407I	TGTACA	1 cut(s)	547
Bsp143I	GATC	3 cut(s)	176, 229, 498
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	4 cut(s)	303, 354, 764, 952
BspCNI	CTCAG	3 cut(s)	237, 304, 526
BspLI	GGNNCC	3 cut(s)	81, 231, 765
BspMAI	CTGCAG	1 cut(s)	811
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	3 cut(s)	184, 224, 237
BsrDI	GCAATG	2 cut(s)	450, 970
BsrGI	TGTACA	1 cut(s)	547
BsrI	ACTGG	4 cut(s)	475, 846, 892, 927
BssECI	CCNNGG	4 cut(s)	96, 97, 239, 895
BssMI	GATC	3 cut(s)	176, 229, 498
Bst2UI	CCWGG	4 cut(s)	98, 527, 677, 897
Bst4CI	ACNGT	2 cut(s)	639, 752
BstAPI	GCANNNNNTGC	2 cut(s)	133, 689
BstAUI	TGTACA	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	211, 847
BstDEI	CTNAG	5 cut(s)	245, 291, 321, 534, 708
BstF5I	GGATG	5 cut(s)	148, 190, 445, 765, 1020
BstKTI	GATC	3 cut(s)	179, 232, 501
BstMAI	GTCTC	2 cut(s)	963, 991
BstMBI	GATC	3 cut(s)	176, 229, 498
BstMWI	GCNNNNNNNGC	6 cut(s)	133, 580, 589, 662, 686, 689
BstNI	CCWGG	4 cut(s)	98, 527, 677, 897
BstSCI	CCNGG	6 cut(s)	96, 199, 239, 525, 675, 895
BstSFI	CTRYAG	2 cut(s)	635, 807
BstSLI	GKGCMC	2 cut(s)	162, 832
BstV2I	GAAGAC	2 cut(s)	468, 574
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	4 cut(s)	303, 354, 764, 952
BtsCI	GGATG	5 cut(s)	148, 190, 445, 765, 1020
BtsIMutI	CAGTG	3 cut(s)	178, 468, 920
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	211, 847
CaiI	CAGNNNCTG	1 cut(s)	750
Cfr13I	GGNCC	3 cut(s)	302, 763, 951
CseI	GACGC	2 cut(s)	290, 584
CsiI	ACCWGGT	1 cut(s)	525
Csp6I	GTAC	6 cut(s)	38, 115, 189, 548, 631, 839
CviAII	CATG	4 cut(s)	266, 575, 994, 1032
CviQI	GTAC	6 cut(s)	38, 115, 189, 548, 631, 839
DdeI	CTNAG	5 cut(s)	245, 291, 321, 534, 708
DpnI	GATC	3 cut(s)	178, 231, 500
DpnII	GATC	3 cut(s)	176, 229, 498
DraI	TTTAAA	1 cut(s)	415
DriI	GACNNNNNGTC	1 cut(s)	472
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EciI	GGCGGA	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	354
Eco24I	GRGCYC	3 cut(s)	82, 89, 264
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	368, 943
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	951
EcoRII	CCWGG	4 cut(s)	96, 525, 675, 895
EcoT38I	GRGCYC	3 cut(s)	82, 89, 264
FaeI	CATG	4 cut(s)	269, 578, 997, 1035
FatI	CATG	4 cut(s)	265, 574, 993, 1031
FokI	GGATG	5 cut(s)	155, 197, 452, 772, 1027
FriOI	GRGCYC	3 cut(s)	82, 89, 264
FspBI	CTAG	1 cut(s)	398
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	4 cut(s)	303, 354, 764, 952
HapII	CCGG	2 cut(s)	200, 241
HgaI	GACGC	2 cut(s)	290, 584
Hin1II	CATG	4 cut(s)	269, 578, 997, 1035
HindIII	AAGCTT	2 cut(s)	103, 654
HinfI	GANTC	5 cut(s)	5, 92, 289, 419, 971
HpaII	CCGG	2 cut(s)	200, 241
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	4 cut(s)	252, 280, 548, 920
Hpy188I	TCNGA	7 cut(s)	84, 222, 234, 387, 669, 724, 799
Hpy188III	TCNNGA	2 cut(s)	464, 492
Hpy8I	GTNNAC	4 cut(s)	252, 280, 548, 920
Hpy99I	CGWCG	1 cut(s)	600
HpyAV	CCTTC	4 cut(s)	392, 430, 611, 964
HpyCH4III	ACNGT	2 cut(s)	639, 752
HpyF10VI	GCNNNNNNNGC	6 cut(s)	133, 580, 589, 662, 686, 689
HpyF3I	CTNAG	5 cut(s)	245, 291, 321, 534, 708
Hsp92II	CATG	4 cut(s)	269, 578, 997, 1035
Kzo9I	GATC	3 cut(s)	176, 229, 498
LmnI	GCTCC	3 cut(s)	85, 259, 267
LweI	GCATC	3 cut(s)	196, 430, 858
MabI	ACCWGGT	1 cut(s)	525
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	286, 529
MalI	GATC	3 cut(s)	178, 231, 500
MboI	GATC	3 cut(s)	176, 229, 498
MboII	GAAGA	5 cut(s)	468, 579, 725, 949, 949
MfeI	CAATTG	1 cut(s)	856
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	5 cut(s)	82, 89, 162, 264, 832
MluCI	AATT	2 cut(s)	801, 856
MlyI	GAGTC	2 cut(s)	283, 965
MmeI	TCCRAC	2 cut(s)	120, 162
MseI	TTAA	2 cut(s)	414, 735
MslI	CAYNNNNRTG	1 cut(s)	782
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	2 cut(s)	200, 241
MspR9I	CCNGG	6 cut(s)	98, 201, 241, 527, 677, 897
MunI	CAATTG	1 cut(s)	856
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	4 cut(s)	98, 527, 677, 897
MwoI	GCNNNNNNNGC	6 cut(s)	133, 580, 589, 662, 686, 689
NciI	CCSGG	2 cut(s)	201, 241
NdeII	GATC	3 cut(s)	176, 229, 498
NlaIII	CATG	4 cut(s)	269, 578, 997, 1035
NlaIV	GGNNCC	3 cut(s)	81, 231, 765
NmuCI	GTSAC	1 cut(s)	286
PasI	CCCWGGG	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	354
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	5, 92, 419
PleI	GAGTC	2 cut(s)	283, 965
PpsI	GAGTC	2 cut(s)	283, 965
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	4 cut(s)	96, 525, 675, 895
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	4 cut(s)	96, 525, 675, 895
PspN4I	GGNNCC	3 cut(s)	81, 231, 765
PspPI	GGNCC	3 cut(s)	302, 763, 951
PstI	CTGCAG	1 cut(s)	811
PstNI	CAGNNNCTG	1 cut(s)	750
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	6 cut(s)	39, 116, 190, 549, 632, 840
RsaNI	GTAC	6 cut(s)	38, 115, 189, 548, 631, 839
RseI	CAYNNNNRTG	1 cut(s)	782
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	414, 735
Sau3AI	GATC	3 cut(s)	176, 229, 498
Sau96I	GGNCC	3 cut(s)	302, 763, 951
SchI	GAGTC	2 cut(s)	283, 965
ScrFI	CCNGG	6 cut(s)	98, 201, 241, 527, 677, 897
SduI	GDGCHC	5 cut(s)	82, 89, 162, 264, 832
SexAI	ACCWGGT	1 cut(s)	525
SfaNI	GCATC	3 cut(s)	196, 430, 858
SfcI	CTRYAG	2 cut(s)	635, 807
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	2 cut(s)	106, 647
SmoI	CTYRAG	2 cut(s)	106, 647
Sse9I	AATT	2 cut(s)	801, 856
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	257
SspI	AATATT	1 cut(s)	1027
SspMI	CTAG	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	354
StyD4I	CCNGG	6 cut(s)	96, 199, 239, 525, 675, 895
TaaI	ACNGT	2 cut(s)	639, 752
TaqI	TCGA	2 cut(s)	394, 434
TasI	AATT	2 cut(s)	801, 856
TatI	WGTACW	4 cut(s)	37, 114, 547, 838
TfiI	GAWTC	3 cut(s)	5, 92, 419
Tru1I	TTAA	2 cut(s)	414, 735
Tru9I	TTAA	2 cut(s)	414, 735
TscAI	CASTG	3 cut(s)	178, 475, 927
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	950
TspGWI	ACGGA	2 cut(s)	177, 242
TspRI	CASTG	3 cut(s)	178, 475, 927
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.