Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Forward (+)

602037 .. 604382

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGAACAATGGGAGTCAAAGGCCTTACCCTTTATCACTTGAAATCTCATCTTCAGAAATATCGATTGGGGAAGCTATCGTGCAAAGATTCAGCTGAAAACTCCAAGGATGGGATTGCAGCCTCTTGTATTGCTGAAAGCCAGGACACTGGTTCATCCTCGGCTGTCTCATCAAGAGTGATTGCGCAAGATTTGAATGATGGCTACCAGGTTACTGAGGCTTTGCGAGTACAAATGGAAGTCCAACGGAGACTGCATGAGCAGCTGGAGGTGCAGCGTCGTCTTCAACTTCGAATTGAAGCACAGAGCAAGTATCTTCAGTCTATACTTGAGAAAGCTTGTGAGGCTCTGAACGACCAGGCTGCCTCAGCCGCTGGGGTTGAAGCTGCTAAGGAGGAACTCTCTGAACTAGCTATTAGGGTTTCCAATGACTGTGAAGGGATAGTCCCACTTGATTCCGCAAAAATCCCTTCATTGTCAGAAATTGCTGCCGCTTTAGAGAACAGAGATGTCTCCAATGTAATGGCTCGCCTCGGCAACTGCTCTGTTGATAGCTGCTTGACATCAACCGGAAGCCCTTTTTCGCCAATGGATATGAGTTCACTCGCTGCTGCTATGAAGAAAAGACAAAGACCCTTCTTCGGTAATGGAGACTCGTTGCCTTTGGAGAGCAACATGAGGCAGGAAGTCGAATGGATGATGAGTAACATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

239

Amino Acids

25.96

Weight (kDa)

5.54

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
AciI	CCGC	3 cut(s)	372, 459, 492
AcuI	CTGAAG	2 cut(s)	38, 302
AfaI	GTAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	111, 641
AgsI	TTSAA	5 cut(s)	43, 196, 287, 299, 383
AjnI	CCWGG	3 cut(s)	141, 207, 357
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	7 cut(s)	76, 95, 265, 338, 386, 413, 555
AluI	AGCT	7 cut(s)	76, 95, 265, 338, 386, 413, 555
Alw26I	GTCTC	4 cut(s)	172, 244, 517, 645
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	9 cut(s)	119, 262, 274, 362, 386, 488, 555, 608, 611
AspLEI	GCGC	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	367
BbvI	GCAGC	9 cut(s)	131, 274, 286, 349, 373, 475, 542, 595, 598
BccI	CCATC	2 cut(s)	104, 194
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	3 cut(s)	143, 209, 359
BcoDI	GTCTC	4 cut(s)	172, 244, 517, 645
BfaI	CTAG	1 cut(s)	410
Bme1390I	CCNGG	3 cut(s)	143, 209, 359
BmrFI	CCNGG	3 cut(s)	143, 209, 359
BpiI	GAAGAC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	287
Bpu10I	CCTNAGC	2 cut(s)	367, 390
Bpu14I	TTCGAA	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	105, 159, 532
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 641
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	3 cut(s)	143, 209, 359
BseCI	ATCGAT	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	105, 159, 532
BseGI	GGATG	3 cut(s)	115, 155, 702
BseLI	CCNNNNNNNGG	2 cut(s)	111, 641
BseMII	CTCAG	2 cut(s)	207, 381
BseNI	ACTGG	1 cut(s)	154
BseXI	GCAGC	9 cut(s)	131, 274, 286, 349, 373, 475, 542, 595, 598
BseYI	CCCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	2 cut(s)	111, 641
BsmAI	GTCTC	4 cut(s)	172, 244, 517, 645
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	292
BspACI	CCGC	3 cut(s)	372, 459, 492
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	208, 380
BspDI	ATCGAT	1 cut(s)	64
BspT104I	TTCGAA	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	105, 159, 532
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	3 cut(s)	143, 209, 359
Bst4CI	ACNGT	1 cut(s)	434
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	3 cut(s)	216, 367, 390
BstF5I	GGATG	3 cut(s)	115, 155, 702
BstHHI	GCGC	1 cut(s)	187
BstMAI	GTCTC	4 cut(s)	172, 244, 517, 645
BstMWI	GCNNNNNNNGC	5 cut(s)	262, 271, 344, 368, 371
BstNI	CCWGG	3 cut(s)	143, 209, 359
BstSCI	CCNGG	3 cut(s)	141, 207, 357
BstV1I	GCAGC	9 cut(s)	131, 274, 286, 349, 373, 475, 542, 595, 598
BstV2I	GAAGAC	1 cut(s)	275
BstXI	CCANNNNNNTGG	2 cut(s)	149, 523
Bsu15I	ATCGAT	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	115, 155, 702
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	529
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	187
ClaI	ATCGAT	1 cut(s)	64
CseI	GACGC	1 cut(s)	266
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	2 cut(s)	257, 676
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	3 cut(s)	216, 367, 390
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	38, 302
EcoRII	CCWGG	3 cut(s)	141, 207, 357
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	260, 679
FaiI	YATR	5 cut(s)	258, 326, 596, 617, 677
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	256, 675
FokI	GGATG	3 cut(s)	122, 142, 709
FspBI	CTAG	1 cut(s)	410
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	570
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	260, 679
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	4 cut(s)	15, 89, 455, 653
HpaII	CCGG	1 cut(s)	570
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	4 cut(s)	57, 351, 406, 481
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	602
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	3 cut(s)	431, 480, 646
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	4 cut(s)	84, 119, 256, 274
HpyF10VI	GCNNNNNNNGC	5 cut(s)	262, 271, 344, 368, 371
HpyF3I	CTNAG	3 cut(s)	216, 367, 390
Hsp92II	CATG	2 cut(s)	260, 679
HspAI	GCGC	1 cut(s)	185
Lsp1109I	GCAGC	9 cut(s)	131, 274, 286, 349, 373, 475, 542, 595, 598
MabI	ACCWGGT	1 cut(s)	207
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	211, 704
MboII	GAAGA	5 cut(s)	44, 275, 308, 631, 631
MluCI	AATT	2 cut(s)	294, 483
MlyI	GAGTC	2 cut(s)	24, 647
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	9 cut(s)	133, 169, 211, 262, 337, 376, 388, 542, 672
MspA1I	CMGCKG	3 cut(s)	95, 265, 374
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	3 cut(s)	143, 209, 359
MvaI	CCWGG	3 cut(s)	143, 209, 359
MwoI	GCNNNNNNNGC	5 cut(s)	262, 271, 344, 368, 371
NlaIII	CATG	2 cut(s)	260, 679
NmeAIII	GCCGAG	2 cut(s)	140, 513
NsbI	TGCGCA	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	89, 455
PleI	GAGTC	2 cut(s)	23, 647
PpsI	GAGTC	2 cut(s)	23, 647
Psp6I	CCWGG	3 cut(s)	141, 207, 357
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	3 cut(s)	141, 207, 357
PstNI	CAGNNNCTG	1 cut(s)	374
PvuII	CAGCTG	2 cut(s)	95, 265
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SchI	GAGTC	2 cut(s)	24, 647
ScrFI	CCNGG	3 cut(s)	143, 209, 359
SetI	ASST	9 cut(s)	78, 97, 213, 267, 273, 340, 388, 415, 557
SexAI	ACCWGGT	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	294, 483
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	3 cut(s)	372, 459, 492
SspMI	CTAG	1 cut(s)	410
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	141, 207, 357
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	3 cut(s)	64, 292, 690
TasI	AATT	2 cut(s)	294, 483
TatI	WGTACW	1 cut(s)	229
TauI	GCSGC	2 cut(s)	374, 494
TfiI	GAWTC	2 cut(s)	89, 455
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	9 cut(s)	119, 262, 274, 362, 386, 488, 555, 608, 611
TspDTI	ATGAA	3 cut(s)	144, 462, 632
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	154
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.