Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Forward (+)

21623225 .. 21629394

Gene Structure 6170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0133900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4281 bp

ATGGGGGTTCAACCGTTCAAGGCCGAACTGAAGAAGCTCGGGAAGTCCTTATCCATCATTCAAGATTTCTTACGCGGCGCTGCGGATCAGAAAGCACAAGATCAGAACAAGGCAGTAGAGGAATGGGTCATGAAACTGAAAGACATAGCTCACGAGGCAGATGATGTTTTGGATGATTTCAACTATGAAGTTCTCCGGCGCAAAGTGGAACTGCAAAACCACATGAAGAGAAAGGTACTCAACTTCCTTTCTGCATCTAATCCCCTTTTGTTTCGTCTCAAAATGGCGCATAAGATTGAGAAGATCAATGATGCTTTGGTGGAGCTCAAGAATGAGGCAGCTTTCATCAACTTGGTTGCAAAGAGAAGAGATTCAAGCCCTGGAGGGGAAAGGCCGGATCGAGATCAAACGGACTCATTTTTTGAGCAGGATGAAAAGGTTGTTGGAAGGGGAGATGTTGTGACAAACATAGTTGAGACGTTGACCAACTCCGAAAATCAGCAGAATCTTTCAGTTATTGCCATTGTGGGAATGCCTGGACTGGGAAAGACGACTTTGGCTAAATCAGTGTACAATGAACCTGCCATAGATACACACTTCCATAAGAAAATATGGGTGTGTGTATCTAACACTTTCGATGTCGATGTGATTTTAAGCCAGATGTTAGACTCTCTAAACGGACATAGTGCAGGATCGAAAAATCGAGATGCATTGATTAAATTTCTTCAAGAACAGCTGACAGGGAAGAAATATGTTCTTGTACTAGATGATGTTTGGAGCGATGATAGATCACGATGGGAAAGTTTGATGAGTTGTTTGTCAAAGCTGAATTCTTCTCCGGGAAGCAGCATTATTATCACCACCCGCAGTGCCGATGTGGCATCTATTGCTGAAACACTCCCCAGACCTGAACTGGGAAATCTATCAAATGAAGAATGTTGGTCCATTCTGAAGCAAAGAGCTTTGAATTTAGAGGTGAATGATGTCATTGATGCAGATCCAGAAAGAATTGGGAGGGCGATTGCTGAAAAGTGTAGAGGCGTACCCTTAGTTGCAAAGGTTTTGGGAAGCATGATGCGCTCTAAAACTAGTCGAGATGAATGGTTGGCAATTCAAAATAATGAAATATGGGACTTACCTGAAGAAGGTGATAGAATCATGTCGGTATTGAAGTTGAGTTTTAATAACTTGAAGTCATCACCTTTGAAGCAGTGTTTTGCATATTGCTCAATGTTGAAGAAAGATTTTGAAATTGAAAGAGATAATTTGATCCAACTTTGGATGGCTCAGGGATTGCTCCAGTCTTCAACTGAGAAAAATCATCATGAAATGGAGGATACAGGCAATGAATATTTTAATATTCTATTGAAAAATTCTTTATTTCAAGAGGTAACTGAAGGTGGCACTATTACCAAGTACACAATGCACGATCTTGTGCATGATCTTGCAGAAGAAGTATCCCAAAGTGAGAGCTTGACACGAGATTCAAATGATACATGTGGGGTTCGACATGTTGCACGTATTTCTCCTTCAACACTAAAAAACATGTCAGAAGTAACTGTTAGGAGATTGCACTCCTTATTTTCAAATGATCAGGTCCCAGATATCATTTTCTCCAAGTTTATAGCATTGCGGGTCTTGAGTTTATATAGGACAGATTTTCAAGAGTTGCCAAATTCATTTGGCAAGTTGAAGCACTTGAGATATCTAGACGTCTCGCATACAAGAATCAAAGCACTTCCCAAGTCAATTGGCAAGCTCTATAACCTCCAAACATTGAGAATGCAGGAAACTGATTATCTCAAAGAGGTTCCAAGGGAAATGCAAAACTTGATCAACTTGAGGCATCTTTATTTTGATGAGGAAATGGAATTTCCGGGCGGAGTATTGCGAGGATTAACTAGTCTCCAAACATTGTCTTACTTCAATGTGGGTAAGGAGATGGGTGTTAGAATTGAGGAATTGGTTGGCTTGAACCACTTGAAAGGTGAATTAATCATTCGTAATCTGGAAAATATAAGGGATGAAGAAGAAGCGAAGAAGGCAAATTTAAAGGACAAGAAAAATGTATTGGAGCTAAGTTTTGTATGGACATGGAGAAGAAGCAGAAGCAATCCAGAAGGTTTGGAGAGTAGGCCGAGCAGCAACATTAATGACGAGAACGTACTTGAAGGACTCCAACCACATGACAAGTTGGAGAGCTTAAGGATTGAAAACTTCATGGGTGACAAATTTCCTTCATGGATGATGAGACACCCTTTGCCTCTCAACAATTTGAAGAAGGTCCTCCTTTTTGGCTGTAGCAGATGTGAAGAGCTCCCGATACTAGGCCATCTACCGGATCTTGGACATCTCGAGATTTATGGAATGCATGGCCTAAAACGCTTGGGAAGTGAATTTTATGGTTATAATCATGTTTACAAGGCTGCTGTGGCTGCTACACCAGAGAAGGAGACAATTGTCTTATTTCCAGCACTGAAAGAATTAAGAATTGAAAGGTGCGGTGAGCTAACTGAATGGATGGAAGCACCCAGACCGGTGACATCATCATCAACAACAAGAAAAGTAGAGGTGTTCCCTTGCCTGGAGAAGTTGACTCTTTGGGATTGTCCCTTATTGGGAGATGCTCCAAGTCATTTCCCATCTCTCAAGGAGTTGTTGATAGGGGGCATGGACAGCGAGAAGCCGATGACAAGTATATGCAATGAAGTGAGCACTCTGACTTCTCTCTGTATACGTAAGATCAAGGGGCTTACTTCGCTGTCCTCAGGGAGGCTGAAGAAGAACAAGAACCTCACATCTTTGGTGATCTGGGGTTGTGATGAGATGATTCGTATTGCTCCAAATGTATCCAGGTCGCTGAAGATTGAGAATTGTCAAAAACTGGAGCATCTAGTCGAGGGTCTAGACACGCTCCCTCTTCTCGAGAAGTTGACCATAAGTCAATGTCCTACTCTAGAGTTCATTCCGATTGACCACGACATGGCATCCCTCCGCGAATTGACGATCAAGCATTGTGATGGATTATCTAGTATTGGCATACTCGATCACTGCACCTCTCTACAGGAATTGCATATATGGAGTTGCAGAAATCTAACATCCATTCCAATCTCACAGGGCCTTGCATCTCTCCGTGAATTGGAGATCGGGTATTGTAATGGATTATCTTGTATTGGCATACTCGATCACTGCACCTCTCTACAGCAATTGCGGATAAGCGGATGTGGAAATCTAACATCCATTCCAATCTCACAAGGCCTTGCATCTCTCCGCAAATTGGATATTTGGTACTGTGGTGGGTCAACGGGCCTACTGTGCGGGATTGAAAACTGTCCCTCGCTTCAGGAGTTGAGTGTAATGGGCCTACCATCACTTCCAGATTTCCGCAGTTTCACATCCCTCCTTGTATTGGAGATTGGAAAATGTGCGGGGATAGAAAGTCTGGTATGTGGGTTTCATATCCCTGTGTCTCTGGAGCAGTTGCGGATTTCTCAATGCCATAACTTAGAGAGTATTCCAAGTTTAGAGGAATGCACATCCCTCCGTCAGTTAGAGGTTCGTGATTGTGAGAAATTGAAGTCTCTCTCAACAGGGCTGCGCTGCCTCGCTCCTCTCGAGAAATTGGAGTTAGGTCCTTTTTGGGAGGAGCTCGACTCCTTCCCTGATTTTCAATTTCCATCACAACAACTTGACGAATTAGAGTTGTGCGGGTGGCCTAAGCTCAAGTCTCTTCCTCAACAAGTTCAACACTTCACTTCGCTGACATGGTTGACTATACATTCCTTTAATGGAGTGGAGGCTTTACCAGAGTGGTTGGGCAACCTTGCATCTCTCGAGTACCTGACTATTTTGGATTGTGTGCATCTCAAGTATCTACCTTCACTCAAAGCAATGCAACGCCTCACCAAATTAGAGGAACTACGAATTTCTACGTGTCCACTTCTAAAGGAAAGATGCACCGAGGACAGCGGCGAAGAATGGCCAAAGATTTCTCACATTCCATATCTCCGTCTTTGTAAGCTTCTTGCTGGGCTGCGCTGCCTCGCTCGTCTGGAGAAATTGGAATCAGGTCCTTTTTGGAAGGAGCTCGACTCCTTCCCTGTATTTCAAGTTCCATCACAACAACTTCTCTCATTATGGTTACACAGGTGGCCTAAGCTCAAGTCTCTTCCTCAACAAGTTCAACACTTCACTTCGCTGACATGGTTGACTATAAATTCCTTTAATGGAGTGGAGGCTTTACCAGAGTGGTTGGGCAACCTTGCATTTCTTGGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

1426

Amino Acids

161.46

Weight (kDa)

5.93

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	6 - 74	1.6e-15	Rx N-terminal domain
NB-ARC	PF00931	153 - 323	7.2e-34	NB-ARC domain
WHD_DRP	PF23559	413 - 483	9.8e-24	Disease resistance protein Winged helix domain
LRR_14	PF23598	529 - 791	4.1e-31	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	652 - 790	1.6e-34	R13L1/DRL21 LRRs
LRR_5	PF13306	981 - 1092	3.9e-06	BspA type Leucine rich repeat region (6 copies)
LRR_14	PF23598	1168 - 1406	1e-09	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	1248 - 1309	6.4e-06	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2409
AatII	GACGTC	1 cut(s)	1716
Acc36I	ACCTGC	1 cut(s)	589
AccB7I	CCANNNNNTGG	1 cut(s)	2983
AccI	GTMKAC	1 cut(s)	2734
AccII	CGCG	2 cut(s)	75, 2997
AclWI	GGATC	7 cut(s)	93, 405, 700, 992, 1264, 2349, 4269
AcoI	YGGCCR	1 cut(s)	3980
AcuI	CTGAAG	7 cut(s)	50, 971, 1161, 1416, 2798, 2882, 3326
AcyI	GRCGYC	1 cut(s)	1713
AfaI	GTAC	8 cut(s)	237, 572, 762, 1044, 1418, 2166, 3290, 3839
AflII	CTTAAG	1 cut(s)	2203
AflIII	ACRYGT	4 cut(s)	1496, 1510, 1545, 3932
AgeI	ACCGGT	1 cut(s)	2536
AhdI	GACNNNNNGTC	1 cut(s)	2940
AhlI	ACTAGT	2 cut(s)	1088, 1901
AjnI	CCWGG	4 cut(s)	379, 535, 2583, 2852
AjuI	GAANNNNNNNTTGG	4 cut(s)	426, 458, 2054, 2086
Alw21I	GWGCWC	5 cut(s)	327, 2319, 2717, 3651, 4089
AlwI	GGATC	7 cut(s)	93, 405, 700, 992, 1264, 2349, 4269
Ama87I	CYCGRG	5 cut(s)	38, 2354, 2924, 3614, 3833
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AseI	ATTAAT	2 cut(s)	1994, 2151
AsiGI	ACCGGT	1 cut(s)	2536
Asp700I	GAANNNNTTC	1 cut(s)	370
AspLEI	GCGC	6 cut(s)	80, 201, 289, 1080, 3600, 4038
AspS9I	GGNCC	8 cut(s)	942, 1597, 2284, 3118, 3307, 3361, 3632, 4070
AsuC2I	CCSGG	2 cut(s)	840, 1878
AvaI	CYCGRG	5 cut(s)	38, 2354, 2924, 3614, 3833
AvaII	GGWCC	5 cut(s)	942, 1597, 2284, 3632, 4070
AxyI	CCTNAGG	1 cut(s)	2767
BaeI	ACNNNNGTAYC	2 cut(s)	3280, 3313
BalI	TGGCCA	1 cut(s)	3982
BamHI	GGATCC	1 cut(s)	4274
BanII	GRGCYC	4 cut(s)	327, 2319, 3651, 4089
BarI	GAAGNNNNNNTAC	2 cut(s)	1513, 1545
BauI	CACGAG	2 cut(s)	152, 1479
BbsI	GAAGAC	1 cut(s)	1296
Bbv12I	GWGCWC	5 cut(s)	327, 2319, 2717, 3651, 4089
BciT130I	CCWGG	4 cut(s)	381, 537, 2585, 2854
BciVI	GTATCC	3 cut(s)	1330, 1468, 2860
BclI	TGATCA	2 cut(s)	1591, 1833
BcnI	CCSGG	2 cut(s)	840, 1878
BcuI	ACTAGT	2 cut(s)	1088, 1901
BfaI	CTAG	9 cut(s)	764, 1089, 1709, 1902, 2327, 2894, 2906, 2957, 3030
BfmI	CTRYAG	3 cut(s)	2299, 3062, 3200
BfoI	RGCGCY	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	2203
BfuAI	ACCTGC	1 cut(s)	589
BfuI	GTATCC	3 cut(s)	1330, 1468, 2860
BglI	GCCNNNNNGGC	1 cut(s)	878
Bme1390I	CCNGG	6 cut(s)	381, 537, 840, 1878, 2585, 2854
Bme18I	GGWCC	5 cut(s)	942, 1597, 2284, 3632, 4070
BmeRI	GACNNNNNGTC	1 cut(s)	2940
BmeT110I	CYCGRG	5 cut(s)	38, 2354, 2924, 3614, 3833
BmgT120I	GGNCC	8 cut(s)	942, 1597, 2284, 3118, 3307, 3361, 3632, 4070
BmiI	GGNNCC	3 cut(s)	1599, 1812, 4276
BmrFI	CCNGG	6 cut(s)	381, 537, 840, 1878, 2585, 2854
BmrI	ACTGGG	2 cut(s)	551, 923
BmuI	ACTGGG	2 cut(s)	551, 923
BoxI	GACNNNNGTC	1 cut(s)	2459
BpiI	GAAGAC	1 cut(s)	1296
BplI	GAGNNNNNCTC	4 cut(s)	3638, 3670, 4076, 4108
BpmI	CTGGAG	6 cut(s)	402, 1283, 2606, 2906, 3494, 4073
Bpu10I	CCTNAGC	3 cut(s)	1287, 3717, 4155
BpuEI	CTTGAG	8 cut(s)	311, 1660, 1720, 1861, 2633, 3707, 3851, 4145
BpuMI	CCSGG	2 cut(s)	840, 1878
BsaAI	YACGTR	3 cut(s)	1520, 2738, 3933
BsaBI	GATNNNNATC	2 cut(s)	402, 996
BsaHI	GRCGYC	1 cut(s)	1713
BsaJI	CCNNGG	3 cut(s)	379, 1814, 3960
BsaWI	WCCGGW	2 cut(s)	2338, 2536
BsaXI	ACNNNNNCTCC	4 cut(s)	444, 474, 3134, 3164
Bse118I	RCCGGY	1 cut(s)	2536
Bse1I	ACTGG	4 cut(s)	546, 918, 1300, 2889
Bse21I	CCTNAGG	1 cut(s)	2767
Bse3DI	GCAATG	4 cut(s)	1351, 1628, 2710, 3897
Bse8I	GATNNNNATC	2 cut(s)	402, 996
BseBI	CCWGG	4 cut(s)	381, 537, 2585, 2854
BseDI	CCNNGG	3 cut(s)	379, 1814, 3960
BseJI	GATNNNNATC	2 cut(s)	402, 996
BseMI	GCAATG	4 cut(s)	1351, 1628, 2710, 3897
BseMII	CTCAG	3 cut(s)	1301, 1302, 2781
BseNI	ACTGG	4 cut(s)	546, 918, 1300, 2889
BseRI	GAGGAG	2 cut(s)	3600, 3659
BseYI	CCCAGC	1 cut(s)	4028
BsgI	GTGCAG	3 cut(s)	708, 3037, 3175
Bsh1236I	CGCG	2 cut(s)	75, 2997
BshTI	ACCGGT	1 cut(s)	2536
BsiHKAI	GWGCWC	5 cut(s)	327, 2319, 2717, 3651, 4089
BsiHKCI	CYCGRG	5 cut(s)	38, 2354, 2924, 3614, 3833
BsiSI	CCGG	6 cut(s)	196, 395, 839, 1877, 2339, 2537
BslFI	GGGAC	4 cut(s)	1145, 1583, 2595, 3318
BsmBI	CGTCTC	3 cut(s)	281, 470, 1720
BsmFI	GGGAC	4 cut(s)	1145, 1583, 2595, 3318
BsmI	GAATGC	4 cut(s)	537, 1788, 2373, 3536
BsoBI	CYCGRG	5 cut(s)	38, 2354, 2924, 3614, 3833
Bsp1286I	GDGCHC	5 cut(s)	327, 2319, 2717, 3651, 4089
Bsp1407I	TGTACA	1 cut(s)	570
BspCNI	CTCAG	3 cut(s)	1300, 1303, 2780
BspFNI	CGCG	2 cut(s)	75, 2997
BspHI	TCATGA	2 cut(s)	129, 1324
BspLI	GGNNCC	3 cut(s)	1599, 1812, 4276
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	7 cut(s)	93, 405, 700, 992, 1264, 2349, 4269
BspQI	GCTCTTC	1 cut(s)	2307
BspTI	CTTAAG	1 cut(s)	2203
BsrDI	GCAATG	4 cut(s)	1351, 1628, 2710, 3897
BsrFI	RCCGGY	1 cut(s)	2536
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	4 cut(s)	546, 918, 1300, 2889
BssAI	RCCGGY	1 cut(s)	2536
BssECI	CCNNGG	3 cut(s)	379, 1814, 3960
BssNAI	GTATAC	1 cut(s)	2735
BssNI	GRCGYC	1 cut(s)	1713
BssSI	CACGAG	2 cut(s)	152, 1479
BssT1I	CCWWGG	1 cut(s)	1814
Bst1107I	GTATAC	1 cut(s)	2735
Bst2BI	CACGAG	2 cut(s)	152, 1479
Bst2UI	CCWGG	4 cut(s)	381, 537, 2585, 2854
Bst4CI	ACNGT	5 cut(s)	15, 1561, 3293, 3315, 3332
Bst6I	CTCTTC	6 cut(s)	221, 361, 2307, 2925, 3735, 4173
BstACI	GRCGYC	1 cut(s)	1713
BstAFI	CTTAAG	1 cut(s)	2203
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstAUI	TGTACA	1 cut(s)	570
BstBAI	YACGTR	3 cut(s)	1520, 2738, 3933
BstC8I	GCNNGC	1 cut(s)	1757
BstDEI	CTNAG	8 cut(s)	1048, 1287, 1311, 2078, 2767, 3505, 3717, 4155
BstENI	CCTNNNNNAGG	2 cut(s)	1143, 2770
BstFNI	CGCG	2 cut(s)	75, 2997
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	6 cut(s)	80, 201, 289, 1080, 3600, 4038
BstNI	CCWGG	4 cut(s)	381, 537, 2585, 2854
BstNSI	RCATGY	3 cut(s)	1500, 1514, 1549
BstPAI	GACNNNNGTC	1 cut(s)	2459
BstSCI	CCNGG	6 cut(s)	379, 535, 838, 1876, 2583, 2852
BstSFI	CTRYAG	3 cut(s)	2299, 3062, 3200
BstSNI	TACGTA	1 cut(s)	2738
BstUI	CGCG	2 cut(s)	75, 2997
BstV2I	GAAGAC	1 cut(s)	1296
BstX2I	RGATCY	3 cut(s)	997, 2341, 4274
BstYI	RGATCY	3 cut(s)	997, 2341, 4274
BstZ17I	GTATAC	1 cut(s)	2735
Bsu36I	CCTNAGG	1 cut(s)	2767
BsuI	GTATCC	3 cut(s)	1330, 1468, 2860
BtgZI	GCGATG	1 cut(s)	795
BtsI	GCAGTG	4 cut(s)	874, 1217, 3049, 3187
BtsIMutI	CAGTG	6 cut(s)	573, 874, 1217, 2474, 3049, 3187
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	1757
CciI	TCATGA	2 cut(s)	129, 1324
CfoI	GCGC	6 cut(s)	80, 201, 289, 1080, 3600, 4038
Cfr10I	RCCGGY	1 cut(s)	2536
Cfr13I	GGNCC	8 cut(s)	942, 1597, 2284, 3118, 3307, 3361, 3632, 4070
Csp6I	GTAC	8 cut(s)	236, 571, 761, 1043, 1417, 2165, 3289, 3838
CspAI	ACCGGT	1 cut(s)	2536
CviQI	GTAC	8 cut(s)	236, 571, 761, 1043, 1417, 2165, 3289, 3838
DdeI	CTNAG	8 cut(s)	1048, 1287, 1311, 2078, 2767, 3505, 3717, 4155
DraI	TTTAAA	1 cut(s)	2052
DriI	GACNNNNNGTC	1 cut(s)	2940
EaeI	YGGCCR	1 cut(s)	3980
Eam1104I	CTCTTC	6 cut(s)	221, 361, 2307, 2925, 3735, 4173
Eam1105I	GACNNNNNGTC	1 cut(s)	2940
EarI	CTCTTC	6 cut(s)	221, 361, 2307, 2925, 3735, 4173
EciI	GGCGGA	1 cut(s)	1896
Ecl136II	GAGCTC	4 cut(s)	325, 2317, 3649, 4087
Eco105I	TACGTA	1 cut(s)	2738
Eco130I	CCWWGG	1 cut(s)	1814
Eco147I	AGGCCT	1 cut(s)	3258
Eco24I	GRGCYC	4 cut(s)	327, 2319, 3651, 4089
Eco32I	GATATC	2 cut(s)	1606, 1706
Eco47I	GGWCC	5 cut(s)	942, 1597, 2284, 3632, 4070
Eco53kI	GAGCTC	4 cut(s)	325, 2317, 3649, 4087
Eco57I	CTGAAG	7 cut(s)	50, 971, 1161, 1416, 2798, 2882, 3326
Eco81I	CCTNAGG	1 cut(s)	2767
Eco88I	CYCGRG	5 cut(s)	38, 2354, 2924, 3614, 3833
EcoICRI	GAGCTC	4 cut(s)	325, 2317, 3649, 4087
EcoNI	CCTNNNNNAGG	2 cut(s)	1143, 2770
EcoO109I	RGGNCCY	5 cut(s)	1597, 2284, 3118, 3632, 4070
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	4 cut(s)	379, 535, 2583, 2852
EcoRV	GATATC	2 cut(s)	1606, 1706
EcoT14I	CCWWGG	1 cut(s)	1814
EcoT22I	ATGCAT	2 cut(s)	712, 2373
EcoT38I	GRGCYC	4 cut(s)	327, 2319, 3651, 4089
ErhI	CCWWGG	1 cut(s)	1814
Esp3I	CGTCTC	3 cut(s)	281, 470, 1720
FaqI	GGGAC	4 cut(s)	1145, 1583, 2595, 3318
FauI	CCCGC	5 cut(s)	872, 1626, 3311, 3421, 3701
FbaI	TGATCA	2 cut(s)	1591, 1833
FblI	GTMKAC	1 cut(s)	2734
FriOI	GRGCYC	4 cut(s)	327, 2319, 3651, 4089
FspBI	CTAG	9 cut(s)	764, 1089, 1709, 1902, 2327, 2894, 2906, 2957, 3030
GlaI	GCGC	6 cut(s)	79, 200, 288, 1079, 3599, 4037
GsaI	CCCAGC	1 cut(s)	4032
GsuI	CTGGAG	6 cut(s)	402, 1283, 2606, 2906, 3494, 4073
HaeII	RGCGCY	1 cut(s)	81
HapII	CCGG	6 cut(s)	196, 395, 839, 1877, 2339, 2537
HhaI	GCGC	6 cut(s)	80, 201, 289, 1080, 3600, 4038
Hin1I	GRCGYC	1 cut(s)	1713
Hin6I	GCGC	6 cut(s)	78, 199, 287, 1078, 3598, 4036
HinP1I	GCGC	6 cut(s)	78, 199, 287, 1078, 3598, 4036
HincII	GTYRAC	6 cut(s)	483, 2595, 2934, 3303, 3771, 4209
HindII	GTYRAC	6 cut(s)	483, 2595, 2934, 3303, 3771, 4209
HindIII	AAGCTT	1 cut(s)	4019
HpaII	CCGG	6 cut(s)	196, 395, 839, 1877, 2339, 2537
Hpy188I	TCNGA	7 cut(s)	90, 105, 493, 951, 1552, 2721, 2970
HpyCH4III	ACNGT	5 cut(s)	15, 1561, 3293, 3315, 3332
HpyCH4IV	ACGT	6 cut(s)	479, 1519, 1713, 2163, 2737, 3932
HpyF3I	CTNAG	8 cut(s)	1048, 1287, 1311, 2078, 2767, 3505, 3717, 4155
HpySE526I	ACGT	6 cut(s)	479, 1519, 1713, 2163, 2737, 3932
Hsp92I	GRCGYC	1 cut(s)	1713
HspAI	GCGC	6 cut(s)	78, 199, 287, 1078, 3598, 4036
Ksp22I	TGATCA	2 cut(s)	1591, 1833
LguI	GCTCTTC	1 cut(s)	2307
MaeI	CTAG	9 cut(s)	764, 1089, 1709, 1902, 2327, 2894, 2906, 2957, 3030
MaeII	ACGT	6 cut(s)	479, 1519, 1713, 2163, 2737, 3932
MaeIII	GTNAC	6 cut(s)	460, 1390, 1555, 2225, 2539, 4140
MfeI	CAATTG	3 cut(s)	1749, 2457, 3206
MflI	RGATCY	3 cut(s)	997, 2341, 4274
MhlI	GDGCHC	5 cut(s)	327, 2319, 2717, 3651, 4089
MlsI	TGGCCA	1 cut(s)	3982
MluNI	TGGCCA	1 cut(s)	3982
MlyI	GAGTC	6 cut(s)	407, 662, 2169, 2590, 3647, 4085
MmeI	TCCRAC	4 cut(s)	424, 1297, 2175, 2203
Mox20I	TGGCCA	1 cut(s)	3982
Mph1103I	ATGCAT	2 cut(s)	712, 2373
MroXI	GAANNNNTTC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	3982
MslI	CAYNNNNRTG	1 cut(s)	3018
Msp20I	TGGCCA	1 cut(s)	3982
MspA1I	CMGCKG	2 cut(s)	736, 3969
MspCI	CTTAAG	1 cut(s)	2203
MspI	CCGG	6 cut(s)	196, 395, 839, 1877, 2339, 2537
MspR9I	CCNGG	6 cut(s)	381, 537, 840, 1878, 2585, 2854
MunI	CAATTG	3 cut(s)	1749, 2457, 3206
Mva1269I	GAATGC	4 cut(s)	537, 1788, 2373, 3536
MvaI	CCWGG	4 cut(s)	381, 537, 2585, 2854
MvnI	CGCG	2 cut(s)	75, 2997
NciI	CCSGG	2 cut(s)	840, 1878
NlaIV	GGNNCC	3 cut(s)	1599, 1812, 4276
NmeAIII	GCCGAG	1 cut(s)	2163
NmuCI	GTSAC	3 cut(s)	460, 2225, 2539
NsiI	ATGCAT	2 cut(s)	712, 2373
NspI	RCATGY	3 cut(s)	1500, 1514, 1549
PaeR7I	CTCGAG	4 cut(s)	2354, 2924, 3614, 3833
PagI	TCATGA	2 cut(s)	129, 1324
PceI	AGGCCT	1 cut(s)	3258
PciI	ACATGT	3 cut(s)	1496, 1510, 1545
PciSI	GCTCTTC	1 cut(s)	2307
PcsI	WCGNNNNNNNCGW	1 cut(s)	3612
PctI	GAATGC	4 cut(s)	537, 1788, 2373, 3536
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	7 cut(s)	371, 505, 1155, 1484, 1728, 2830, 4064
PflMI	CCANNNNNTGG	1 cut(s)	2983
PfoI	TCCNGGA	1 cut(s)	838
PinAI	ACCGGT	1 cut(s)	2536
PleI	GAGTC	6 cut(s)	407, 662, 2169, 2590, 3647, 4085
PpsI	GAGTC	6 cut(s)	407, 662, 2169, 2590, 3647, 4085
Ppu21I	YACGTR	3 cut(s)	1520, 2738, 3933
PpuMI	RGGWCCY	4 cut(s)	1597, 2284, 3632, 4070
PscI	ACATGT	3 cut(s)	1496, 1510, 1545
PshAI	GACNNNNGTC	1 cut(s)	2459
PshBI	ATTAAT	2 cut(s)	1994, 2151
PsiI	TTATAA	1 cut(s)	2409
Psp124BI	GAGCTC	4 cut(s)	327, 2319, 3651, 4089
Psp5II	RGGWCCY	4 cut(s)	1597, 2284, 3632, 4070
Psp6I	CCWGG	4 cut(s)	379, 535, 2583, 2852
PspFI	CCCAGC	1 cut(s)	4028
PspGI	CCWGG	4 cut(s)	379, 535, 2583, 2852
PspN4I	GGNNCC	3 cut(s)	1599, 1812, 4276
PspPI	GGNCC	8 cut(s)	942, 1597, 2284, 3118, 3307, 3361, 3632, 4070
PspPPI	RGGWCCY	4 cut(s)	1597, 2284, 3632, 4070
PsrI	GAACNNNNNNTAC	2 cut(s)	4095, 4127
PsuI	RGATCY	3 cut(s)	997, 2341, 4274
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	8 cut(s)	237, 572, 762, 1044, 1418, 2166, 3290, 3839
RsaNI	GTAC	8 cut(s)	236, 571, 761, 1043, 1417, 2165, 3289, 3838
RseI	CAYNNNNRTG	1 cut(s)	3018
SacI	GAGCTC	4 cut(s)	327, 2319, 3651, 4089
SapI	GCTCTTC	1 cut(s)	2307
Sau96I	GGNCC	8 cut(s)	942, 1597, 2284, 3118, 3307, 3361, 3632, 4070
SchI	GAGTC	6 cut(s)	407, 662, 2169, 2590, 3647, 4085
ScrFI	CCNGG	6 cut(s)	381, 537, 840, 1878, 2585, 2854
SduI	GDGCHC	5 cut(s)	327, 2319, 2717, 3651, 4089
SfcI	CTRYAG	3 cut(s)	2299, 3062, 3200
Sfr274I	CTCGAG	4 cut(s)	2354, 2924, 3614, 3833
SinI	GGWCC	5 cut(s)	942, 1597, 2284, 3632, 4070
SlaI	CTCGAG	4 cut(s)	2354, 2924, 3614, 3833
SmiMI	CAYNNNNRTG	1 cut(s)	3018
SnaBI	TACGTA	1 cut(s)	2738
SpeI	ACTAGT	2 cut(s)	1088, 1901
SseBI	AGGCCT	1 cut(s)	3258
SspI	AATATT	2 cut(s)	1352, 1360
SspMI	CTAG	9 cut(s)	764, 1089, 1709, 1902, 2327, 2894, 2906, 2957, 3030
SstI	GAGCTC	4 cut(s)	327, 2319, 3651, 4089
StuI	AGGCCT	1 cut(s)	3258
StyD4I	CCNGG	6 cut(s)	379, 535, 838, 1876, 2583, 2852
StyI	CCWWGG	1 cut(s)	1814
TaaI	ACNGT	5 cut(s)	15, 1561, 3293, 3315, 3332
TaiI	ACGT	6 cut(s)	482, 1522, 1716, 2166, 2740, 3935
TatI	WGTACW	3 cut(s)	570, 760, 1416
TauI	GCSGC	2 cut(s)	78, 3972
TfiI	GAWTC	7 cut(s)	371, 505, 1155, 1484, 1728, 2830, 4064
TscAI	CASTG	6 cut(s)	573, 874, 1217, 2481, 3056, 3194
TseFI	GTSAC	3 cut(s)	460, 2225, 2539
Tsp45I	GTSAC	3 cut(s)	460, 2225, 2539
TspGWI	ACGGA	5 cut(s)	425, 693, 3122, 3533, 3998
TspRI	CASTG	6 cut(s)	573, 874, 1217, 2481, 3056, 3194
Van91I	CCANNNNNTGG	1 cut(s)	2983
Vha464I	CTTAAG	1 cut(s)	2203
VpaK11BI	GGWCC	5 cut(s)	942, 1597, 2284, 3632, 4070
VspI	ATTAAT	2 cut(s)	1994, 2151
XagI	CCTNNNNNAGG	2 cut(s)	1143, 2770
XbaI	TCTAGA	3 cut(s)	1708, 2905, 2956
XceI	RCATGY	3 cut(s)	1500, 1514, 1549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	910
XhoI	CTCGAG	4 cut(s)	2354, 2924, 3614, 3833
XmiI	GTMKAC	1 cut(s)	2734
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	9 cut(s)	764, 1089, 1709, 1902, 2327, 2894, 2906, 2957, 3030
ZraI	GACGTC	1 cut(s)	1714
Zsp2I	ATGCAT	2 cut(s)	712, 2373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.