Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Reverse (-)

19667083 .. 19670987

Gene Structure 3905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15780.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTACTCTGCTATGCATTCTCTGCCTTTGGATGGGGGTGTTTGTGGGCATGGAGAGTTTAGTGGATCGTTGGATGGTACGAACTTGCCGGGTGATGCTTGCTTGGTTCTGACTACGGATCCAAAGCCGCGGCTGAGGTGGACGGCGGAGCTCCATGAGAGGTTTGTGGACGCTGTCACTCAGCTTGGTGGCCCTGACAAAGCGACACCTAAGACCATTATGAGAACAATGGGAGTAAAAGGCCTTACCCTTTATCACTTGAAATCACACCTTCAGAAATATCGACTGGGAAAGCAATCGTTCAAAGAATCAACTGAAAATTCAAAGGATGCATCTTGCATTGCTGAATGTCAGGACACTGGGTCTTCGGCAACCTCATCAAGAGTGATTGCACAAGATTTGAATGATGGCTTCCAGGTTACTGAGGCATTGCGTGTACAAATGGAAGTGCAAAGAAGACTGCATGAGCAGCTGGAGGTGCAGCGTCGCCTTCAACTTCGAATTGAAGCACAGGGAAAGTACCTACAGTCCATACTTGAGAAAGCTTGTAAGGCTCTGAATGACCAGGCTGCAACTGCTGCTGGACTTGAAGCTGCTAAGGAAGAACTCTCTGAACTTGCTATTAAGGTTTCCAGCGACTGTCAAGGAATGACTCCACTTGATACCATAAAAATGCCATCCTTGTCTGAAATTGCTGCAGCAATAGAGAACAAAAGTGTCCCAAATATACTGGCTCGCATGGGCAACTGCTCTGTTGATAGCTGCTTGACATCAACTGGAAGCCCTGGTTCTCCAATGGGTATGAGTTCACTGGCTGTGAAGAAAAGGCAAAGGCCCTTCTTTGGAAATGGAGAATCGTTGCCCTTAGACGGCAACATGAGGCAAGAAGTAGAATGGATGATGAACAATATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

306

Amino Acids

33.15

Weight (kDa)

6.33

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	44 - 95	1.6e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	143 - 189	7.4e-27	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AciI	CCGC	3 cut(s)	128, 130, 146
AclWI	GGATC	3 cut(s)	73, 113, 126
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	4 cut(s)	5, 79, 438, 521
AfiI	CCNNNNNNNGG	3 cut(s)	32, 842, 869
AgsI	TTSAA	7 cut(s)	262, 304, 324, 403, 494, 506, 590
AhdI	GACNNNNNGTC	1 cut(s)	361
AjnI	CCWGG	3 cut(s)	414, 564, 784
AluBI	AGCT	6 cut(s)	151, 184, 472, 545, 593, 762
AluI	AGCT	6 cut(s)	151, 184, 472, 545, 593, 762
Alw21I	GWGCWC	1 cut(s)	153
AlwI	GGATC	3 cut(s)	73, 113, 126
AlwNI	CAGNNNCTG	1 cut(s)	639
AoxI	GGCC	3 cut(s)	190, 241, 833
ApeKI	GCWGC	8 cut(s)	469, 481, 569, 578, 593, 695, 698, 762
ApoI	RAATTY	1 cut(s)	319
AspS9I	GGNCC	2 cut(s)	191, 834
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	104
AsuII	TTCGAA	1 cut(s)	499
BamHI	GGATCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	357, 463
Bbv12I	GWGCWC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	134
BbvI	GCAGC	8 cut(s)	481, 493, 556, 565, 580, 682, 710, 749
BccI	CCATC	4 cut(s)	26, 68, 401, 685
BceAI	ACGGC	2 cut(s)	159, 886
BciT130I	CCWGG	3 cut(s)	416, 566, 786
BcnI	CCSGG	1 cut(s)	90
BfmI	CTRYAG	2 cut(s)	524, 696
Bme1390I	CCNGG	4 cut(s)	90, 416, 566, 786
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	191, 834
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	4 cut(s)	90, 416, 566, 786
BmrI	ACTGGG	2 cut(s)	296, 369
BmsI	GCATC	3 cut(s)	85, 319, 341
BmuI	ACTGGG	2 cut(s)	296, 369
BpiI	GAAGAC	2 cut(s)	357, 463
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	2 cut(s)	134, 597
Bpu14I	TTCGAA	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	128, 784
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 842, 869
Bse1I	ACTGG	5 cut(s)	291, 364, 735, 781, 816
Bse3DI	GCAATG	2 cut(s)	339, 428
BseBI	CCWGG	3 cut(s)	416, 566, 786
BseDI	CCNNGG	2 cut(s)	128, 784
BseGI	GGATG	5 cut(s)	37, 79, 334, 677, 903
BseLI	CCNNNNNNNGG	3 cut(s)	32, 842, 869
BseMI	GCAATG	2 cut(s)	339, 428
BseMII	CTCAG	3 cut(s)	125, 194, 414
BseNI	ACTGG	5 cut(s)	291, 364, 735, 781, 816
BseXI	GCAGC	8 cut(s)	481, 493, 556, 565, 580, 682, 710, 749
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	192, 243, 835
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	3 cut(s)	32, 842, 869
BsmFI	GGGAC	1 cut(s)	704
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	3 cut(s)	192, 243, 835
Bsp119I	TTCGAA	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	65, 118
BspACI	CCGC	3 cut(s)	128, 130, 146
BspANI	GGCC	3 cut(s)	192, 243, 835
BspCNI	CTCAG	3 cut(s)	126, 193, 415
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	3 cut(s)	73, 113, 126
BspT104I	TTCGAA	1 cut(s)	499
BsrDI	GCAATG	2 cut(s)	339, 428
BsrGI	TGTACA	1 cut(s)	436
BsrI	ACTGG	5 cut(s)	291, 364, 735, 781, 816
BssECI	CCNNGG	2 cut(s)	128, 784
BssMI	GATC	2 cut(s)	65, 118
Bst2UI	CCWGG	3 cut(s)	416, 566, 786
Bst4CI	ACNGT	2 cut(s)	528, 641
BstAPI	GCANNNNNTGC	2 cut(s)	22, 578
BstAUI	TGTACA	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	100, 736
BstDEI	CTNAG	6 cut(s)	134, 180, 210, 423, 597, 865
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	5 cut(s)	37, 79, 334, 677, 903
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	68, 121
BstMBI	GATC	2 cut(s)	65, 118
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 469, 478, 551, 575, 578
BstNI	CCWGG	3 cut(s)	416, 566, 786
BstSCI	CCNGG	4 cut(s)	88, 414, 564, 784
BstSFI	CTRYAG	2 cut(s)	524, 696
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	8 cut(s)	481, 493, 556, 565, 580, 682, 710, 749
BstV2I	GAAGAC	2 cut(s)	357, 463
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	192, 243, 835
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	5 cut(s)	37, 79, 334, 677, 903
BtsIMutI	CAGTG	2 cut(s)	357, 809
Cac8I	GCNNGC	2 cut(s)	100, 736
CaiI	CAGNNNCTG	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	191, 834
Cfr42I	CCGCGG	1 cut(s)	131
CseI	GACGC	2 cut(s)	179, 473
Csp6I	GTAC	4 cut(s)	4, 78, 437, 520
CviAII	CATG	5 cut(s)	50, 155, 464, 739, 877
CviQI	GTAC	4 cut(s)	4, 78, 437, 520
DdeI	CTNAG	6 cut(s)	134, 180, 210, 423, 597, 865
DpnI	GATC	2 cut(s)	67, 120
DpnII	GATC	2 cut(s)	65, 118
DriI	GACNNNNNGTC	1 cut(s)	361
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	834
EcoRII	CCWGG	3 cut(s)	414, 564, 784
EcoT22I	ATGCAT	2 cut(s)	18, 334
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	5 cut(s)	53, 158, 467, 742, 880
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	5 cut(s)	49, 154, 463, 738, 876
FokI	GGATG	5 cut(s)	44, 86, 341, 664, 910
FriOI	GRGCYC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	3 cut(s)	192, 243, 835
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	2 cut(s)	179, 473
Hin1II	CATG	5 cut(s)	53, 158, 467, 742, 880
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	3 cut(s)	308, 652, 854
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	4 cut(s)	141, 169, 437, 809
Hpy188I	TCNGA	5 cut(s)	111, 276, 558, 613, 688
Hpy188III	TCNNGA	2 cut(s)	353, 381
Hpy8I	GTNNAC	4 cut(s)	141, 169, 437, 809
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	281, 500, 847
HpyCH4III	ACNGT	2 cut(s)	528, 641
HpyCH4V	TGCA	9 cut(s)	16, 332, 339, 392, 451, 463, 481, 572, 698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 469, 478, 551, 575, 578
HpyF3I	CTNAG	6 cut(s)	134, 180, 210, 423, 597, 865
Hsp92II	CATG	5 cut(s)	53, 158, 467, 742, 880
KspI	CCGCGG	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	65, 118
LmnI	GCTCC	2 cut(s)	148, 156
Lsp1109I	GCAGC	8 cut(s)	481, 493, 556, 565, 580, 682, 710, 749
LweI	GCATC	3 cut(s)	85, 319, 341
MaeIII	GTNAC	2 cut(s)	175, 418
MalI	GATC	2 cut(s)	67, 120
MboI	GATC	2 cut(s)	65, 118
MboII	GAAGA	4 cut(s)	357, 468, 614, 832
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	3 cut(s)	319, 501, 690
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	129, 153, 385, 418, 469, 873
Mph1103I	ATGCAT	2 cut(s)	18, 334
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	671
MspA1I	CMGCKG	2 cut(s)	130, 472
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	4 cut(s)	90, 416, 566, 786
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	3 cut(s)	416, 566, 786
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	6 cut(s)	22, 469, 478, 551, 575, 578
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	65, 118
NlaIII	CATG	5 cut(s)	53, 158, 467, 742, 880
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	2 cut(s)	18, 334
NspV	TTCGAA	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	243
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	308, 854
PflFI	GACNNNGTC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	3 cut(s)	414, 564, 784
PspGI	CCWGG	3 cut(s)	414, 564, 784
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	191, 834
PstI	CTGCAG	1 cut(s)	700
PstNI	CAGNNNCTG	1 cut(s)	639
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	4 cut(s)	5, 79, 438, 521
RsaNI	GTAC	4 cut(s)	4, 78, 437, 520
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	1 cut(s)	153
SacII	CCGCGG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	624
Sau3AI	GATC	2 cut(s)	65, 118
Sau96I	GGNCC	2 cut(s)	191, 834
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	4 cut(s)	90, 416, 566, 786
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	3 cut(s)	85, 319, 341
SfcI	CTRYAG	2 cut(s)	524, 696
Sfr303I	CCGCGG	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	499
SgrBI	CCGCGG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	3 cut(s)	319, 501, 690
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	3 cut(s)	128, 130, 146
SspI	AATATT	1 cut(s)	910
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	88, 414, 564, 784
TaaI	ACNGT	2 cut(s)	528, 641
TaqI	TCGA	2 cut(s)	283, 499
TasI	AATT	3 cut(s)	319, 501, 690
TatI	WGTACW	2 cut(s)	3, 436
TauI	GCSGC	2 cut(s)	130, 133
TfiI	GAWTC	2 cut(s)	308, 854
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	2 cut(s)	364, 816
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	8 cut(s)	469, 481, 569, 578, 593, 695, 698, 762
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	917
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	364, 816
Tth111I	GACNNNGTC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	319
Zsp2I	ATGCAT	2 cut(s)	18, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.