Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Reverse (-)

21632232 .. 21633360

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0134000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATTCAAGTTGTGCAAGAAATATTTAAGGCCGTAAGACCAGATTCTCAAAGTGCAAGATTTACAGGGTTTGCTCTGCTAACGGCTATGCCAGCATCAGAAACAGTAGAGTTTCTGGCATCAGGGAGGATACAGGCAAATGAGTTTGATGCGTTGGTTTGTAGCAGTGGAAGTGAGGTTTACTACCCTGGTACTTATACAGAAGAAGATGGAAGACTTTTCCCAGATCCAGATTATTCGTCACACATTGACTACCGATGGGGTTGTGAAGGATTAAAAAAAACCATTTGGAAGCTCTTAAATGCCCCTGATGGTGAACGGAATTCAGCATCTGCAAGCCTCATTGAAGAAGATATAAAATCAAGCAGTGCCCATTGCATCTCATACTTAATCAAGGATCCTAGTAAGGCAAGGAAAGTTGATGATTTAAGACAGAAACTCAGGATGCGCGGACTACGCTGCCATCCAATGTACTGCAGGAGCTCAACTCGAATGCAAATTGTTCCTCTCCTTGCTTCTCGAGCACAGGCTCTCAGGTACCTTTTTGTACGGTGGAGGTTGAATGTAGCAAACATGTATGTGTTCCTTGGAGAAAGTCGAGACACCGATTATGAAGAAATGATAGCAGGGACTCACAAGACCATAATCATGAAAGGGGTGGTGGGAAAGGGGTCTGAAGAGCTGCTAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

231

Amino Acids

26.15

Weight (kDa)

8.22

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	50 - 216	1.9e-14	Sucrose-6F-phosphate phosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	537
AccII	CGCG	1 cut(s)	450
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	3 cut(s)	221, 392, 405
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	696
AfaI	GTAC	4 cut(s)	193, 473, 539, 549
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	3 cut(s)	8, 347, 562
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	3 cut(s)	295, 483, 682
AluI	AGCT	3 cut(s)	295, 483, 682
Alw21I	GWGCWC	2 cut(s)	485, 526
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	3 cut(s)	221, 392, 405
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	459, 682
ApoI	RAATTY	1 cut(s)	322
Asp718I	GGTACC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	519
BaeGI	GKGCMC	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	2 cut(s)	485, 526
BbvI	GCAGC	2 cut(s)	446, 669
BccI	CCATC	4 cut(s)	203, 252, 305, 471
BceAI	ACGGC	2 cut(s)	17, 99
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	2 cut(s)	460, 683
BlsI	GCNGC	2 cut(s)	461, 684
Bme1390I	CCNGG	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	519
BmiI	GGNNCC	2 cut(s)	399, 539
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	6 cut(s)	104, 128, 139, 338, 387, 435
BpiI	GAAGAC	1 cut(s)	220
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
BsaJI	CCNNGG	2 cut(s)	187, 586
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	187, 586
BseGI	GGATG	2 cut(s)	450, 463
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	454, 547
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	446, 669
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	537
BsiHKAI	GWGCWC	2 cut(s)	485, 526
BsiHKCI	CYCGRG	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	643
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	519
Bsp1286I	GDGCHC	3 cut(s)	373, 485, 526
Bsp143I	GATC	2 cut(s)	226, 397
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	453, 546
BspFNI	CGCG	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	399, 539
BspMAI	CTGCAG	1 cut(s)	479
BspPI	GGATC	3 cut(s)	221, 392, 405
BspQI	GCTCTTC	1 cut(s)	672
BspT107I	GGYRCC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	187, 586
BssMI	GATC	2 cut(s)	226, 397
BssT1I	CCWWGG	1 cut(s)	586
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	106, 552
Bst6I	CTCTTC	1 cut(s)	672
BstC8I	GCNNGC	2 cut(s)	93, 337
BstDEI	CTNAG	3 cut(s)	440, 533, 686
BstF5I	GGATG	2 cut(s)	450, 463
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	2 cut(s)	229, 400
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	2 cut(s)	226, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 456, 521
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	475
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	446, 669
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	226, 397
BstYI	RGATCY	2 cut(s)	226, 397
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	450, 463
BtsI	GCAGTG	2 cut(s)	172, 373
BtsIMutI	CAGTG	2 cut(s)	172, 373
Cac8I	GCNNGC	2 cut(s)	93, 337
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	648
CfoI	GCGC	1 cut(s)	450
Csp6I	GTAC	4 cut(s)	192, 472, 538, 548
CviAII	CATG	3 cut(s)	574, 649, 693
CviJI	RGCY	7 cut(s)	32, 86, 295, 339, 483, 530, 682
CviKI_1	RGCY	7 cut(s)	32, 86, 295, 339, 483, 530, 682
CviQI	GTAC	4 cut(s)	192, 472, 538, 548
DdeI	CTNAG	3 cut(s)	440, 533, 686
DpnI	GATC	2 cut(s)	228, 399
DpnII	GATC	2 cut(s)	226, 397
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Ecl136II	GAGCTC	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	3 cut(s)	577, 652, 696
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	3 cut(s)	573, 648, 692
Fnu4HI	GCNGC	2 cut(s)	460, 683
FokI	GGATG	2 cut(s)	450, 457
FriOI	GRGCYC	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	460, 683
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	2 cut(s)	460, 683
HaeIII	GGCC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	577, 652, 696
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	4, 44, 631
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	181, 317
Hpy188I	TCNGA	2 cut(s)	100, 676
Hpy188III	TCNNGA	5 cut(s)	230, 442, 519, 599, 649
Hpy8I	GTNNAC	2 cut(s)	181, 317
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	106, 552
HpyCH4V	TGCA	6 cut(s)	16, 56, 335, 378, 477, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 456, 521
HpyF3I	CTNAG	3 cut(s)	440, 533, 686
Hsp92II	CATG	3 cut(s)	577, 652, 696
HspAI	GCGC	1 cut(s)	448
KpnI	GGTACC	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	226, 397
LguI	GCTCTTC	1 cut(s)	672
LmnI	GCTCC	1 cut(s)	480
Lsp1109I	GCAGC	2 cut(s)	446, 669
LweI	GCATC	6 cut(s)	104, 128, 139, 338, 387, 435
MaeI	CTAG	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	2 cut(s)	228, 399
MboI	GATC	2 cut(s)	226, 397
MboII	GAAGA	7 cut(s)	215, 218, 225, 359, 362, 626, 689
MflI	RGATCY	2 cut(s)	226, 397
MhlI	GDGCHC	3 cut(s)	373, 485, 526
MluCI	AATT	2 cut(s)	322, 498
MlyI	GAGTC	1 cut(s)	625
MnlI	CCTC	5 cut(s)	120, 169, 350, 516, 549
MseI	TTAA	5 cut(s)	27, 275, 299, 389, 428
MslI	CAYNNNNRTG	2 cut(s)	578, 647
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	92, 456, 521
NdeII	GATC	2 cut(s)	226, 397
NlaIII	CATG	3 cut(s)	577, 652, 696
NlaIV	GGNNCC	2 cut(s)	399, 539
NmuCI	GTSAC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	577
PaeR7I	CTCGAG	1 cut(s)	519
PagI	TCATGA	1 cut(s)	648
PciI	ACATGT	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	672
PctI	GAATGC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	4, 44
PkrI	GCNGC	2 cut(s)	461, 684
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PscI	ACATGT	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	399, 539
PstI	CTGCAG	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	226, 397
RsaI	GTAC	4 cut(s)	193, 473, 539, 549
RsaNI	GTAC	4 cut(s)	192, 472, 538, 548
RseI	CAYNNNNRTG	2 cut(s)	578, 647
SacI	GAGCTC	1 cut(s)	485
SapI	GCTCTTC	1 cut(s)	672
SaqAI	TTAA	5 cut(s)	27, 275, 299, 389, 428
SatI	GCNGC	2 cut(s)	460, 683
Sau3AI	GATC	2 cut(s)	226, 397
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	3 cut(s)	373, 485, 526
SetI	ASST	7 cut(s)	180, 297, 485, 539, 543, 560, 684
SfaNI	GCATC	6 cut(s)	104, 128, 139, 338, 387, 435
SfcI	CTRYAG	1 cut(s)	475
Sfr274I	CTCGAG	1 cut(s)	519
SlaI	CTCGAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	2 cut(s)	578, 647
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
Sse9I	AATT	2 cut(s)	322, 498
SsiI	CCGC	1 cut(s)	450
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	2 cut(s)	106, 552
TaqI	TCGA	3 cut(s)	490, 520, 598
TasI	AATT	2 cut(s)	322, 498
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	4, 44
Tru1I	TTAA	5 cut(s)	27, 275, 299, 389, 428
Tru9I	TTAA	5 cut(s)	27, 275, 299, 389, 428
TscAI	CASTG	2 cut(s)	172, 373
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	2 cut(s)	459, 682
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	2 cut(s)	627, 665
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	2 cut(s)	172, 373
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	577
XhoI	CTCGAG	1 cut(s)	519
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.