Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Forward (+)

25298521 .. 25303648

Gene Structure 5128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTCCATTCCAGATATGCAGAGTGGGAAACAAAGTGAAAAACCCCACCATAATTGGAAATTTTGGAACACATTTTTGTCTGCAAGCTCATTCCTAGTTCACACCCCCATTTCCTCCAATCCTGTACTTGCTTCCTCCTTCTTCTTCTCCTCTCCCTCTGCAACTTTCGGGGCTTCCAGCCCCGAATCCCAGGGAAGCCTGAGAATGTACTCTGCTTTGCATTCTCTGCCGTTGGATGGGGGTGTTTGTGGGCACGGAGAGTTCAGTGGATCGTTGGATGGTACAAACCTGCCGGGTGATGCTTGCTTGGTTCTGACTACGGATCCGAAGCCCCGGCTGAGGTGGACGGCGGAGCTCCATGAGAGGTTTGTGGACGCTGTGACTCAGCTTGGTGGCCCTGACAAAGCGACACCTAAGACCATTATGAGAACAATGGGAGTAAAAGGCCTTACCCTATATCACTTGAAATCACACCTTCAGAAATATCGACTAGGGAAGCAATCGTTTAAAGAATCAACTGAAAACTCGAAGGATGCTTCTTGCATTGCTGAAAGTCAGGACACTGGGTCTTCGGCAACCTCATCAAGAGTGATCGCCCAAGATTTGAATGATGGCTACCAGGTTACTGAGGCTTTGCGTGTACAAATGGAAGTGCAAAGAAGACTGCATGAGCAGCTGGAGGTGCAGCGTTGCCTTCAACTTCGTATTGAAGCACAGGGAAAGTACCTACAGTCTATACTTGAGAAAGCTTGTAAGGCTCTGAATGACCAGGCTGCAACTGCTGCTGGGCTTGAAGCTGCTAAGGAAGAACTCTCTGAACTTGCTATTAAGGTTTCCAGTGACTATCAAGGGATGGCCCCACTTGATACCATAAAAATGCAGTCCTTGTCTGAAATTGCTGCAGCGATAGAGAACAAAAGTGCCCCAAATGTACTGGCTCGCATCGGCAATTGCTCTGTTGATAGCTGCTTGACATCAACTGGAAGCCCTGGTTCTCCAATGGGTATGAGTTCACTGGCTGCTGCTATGAAGAAAAGGCAAAGGCCCTTCTTCAGCAATGGAGACTCGTTGCCCTTAGAGGGCAACATGAGGCAAGAAGTAGAATGGATGATGAGTAATATTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

376

Amino Acids

40.68

Weight (kDa)

6.52

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	112 - 163	2.2e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	207 - 253	4.1e-27	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	297
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	3 cut(s)	277, 317, 330
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	461, 1036
AfaI	GTAC	6 cut(s)	126, 209, 283, 642, 725, 933
AfiI	CCNNNNNNNGG	3 cut(s)	236, 339, 1079
AgsI	TTSAA	5 cut(s)	466, 607, 698, 710, 794
AhdI	GACNNNNNGTC	1 cut(s)	565
AjnI	CCWGG	4 cut(s)	189, 618, 768, 988
AluBI	AGCT	7 cut(s)	87, 355, 388, 676, 749, 797, 966
AluI	AGCT	7 cut(s)	87, 355, 388, 676, 749, 797, 966
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	1056
AlwI	GGATC	3 cut(s)	277, 317, 330
AoxI	GGCC	4 cut(s)	394, 445, 855, 1043
ApoI	RAATTY	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	395, 856, 1044
AsuC2I	CCSGG	2 cut(s)	294, 334
AsuHPI	GGTGA	1 cut(s)	308
BaeGI	GKGCMC	2 cut(s)	255, 925
BamHI	GGATCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	561, 667
Bbv12I	GWGCWC	1 cut(s)	357
BbvCI	CCTCAGC	1 cut(s)	338
BccI	CCATC	4 cut(s)	230, 272, 605, 847
BceAI	ACGGC	2 cut(s)	214, 363
BciT130I	CCWGG	4 cut(s)	191, 620, 770, 990
BcnI	CCSGG	2 cut(s)	294, 334
BcoDI	GTCTC	1 cut(s)	1056
BfaI	CTAG	2 cut(s)	95, 491
BfmI	CTRYAG	2 cut(s)	728, 900
BfuAI	ACCTGC	1 cut(s)	297
Bme1390I	CCNGG	6 cut(s)	191, 294, 334, 620, 770, 990
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmgT120I	GGNCC	3 cut(s)	395, 856, 1044
BmiI	GGNNCC	2 cut(s)	324, 858
BmrFI	CCNGG	6 cut(s)	191, 294, 334, 620, 770, 990
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	3 cut(s)	289, 523, 951
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	2 cut(s)	561, 667
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	2 cut(s)	338, 801
BpuEI	CTTGAG	1 cut(s)	761
BpuMI	CCSGG	2 cut(s)	294, 334
BsaJI	CCNNGG	4 cut(s)	189, 190, 332, 988
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 339, 1079
Bse1I	ACTGG	5 cut(s)	568, 837, 939, 985, 1020
Bse3DI	GCAATG	2 cut(s)	543, 1063
BseBI	CCWGG	4 cut(s)	191, 620, 770, 990
BseDI	CCNNGG	4 cut(s)	189, 190, 332, 988
BseGI	GGATG	5 cut(s)	241, 283, 538, 858, 1113
BseLI	CCNNNNNNNGG	3 cut(s)	236, 339, 1079
BseMI	GCAATG	2 cut(s)	543, 1063
BseMII	CTCAG	4 cut(s)	191, 329, 398, 618
BseNI	ACTGG	5 cut(s)	568, 837, 939, 985, 1020
BseRI	GAGGAG	1 cut(s)	139
BseSI	GKGCMC	2 cut(s)	255, 925
BseYI	CCCAGC	1 cut(s)	785
BsgI	GTGCAG	1 cut(s)	704
BshFI	GGCC	4 cut(s)	396, 447, 857, 1045
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	293, 334
BslI	CCNNNNNNNGG	3 cut(s)	236, 339, 1079
BsmAI	GTCTC	1 cut(s)	1056
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	396, 447, 857, 1045
Bsp1286I	GDGCHC	3 cut(s)	255, 357, 925
Bsp1407I	TGTACA	1 cut(s)	640
Bsp143I	GATC	3 cut(s)	269, 322, 591
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	4 cut(s)	396, 447, 857, 1045
BspCNI	CTCAG	4 cut(s)	192, 330, 397, 619
BspLI	GGNNCC	2 cut(s)	324, 858
BspMAI	CTGCAG	1 cut(s)	904
BspMI	ACCTGC	1 cut(s)	297
BspPI	GGATC	3 cut(s)	277, 317, 330
BsrDI	GCAATG	2 cut(s)	543, 1063
BsrGI	TGTACA	1 cut(s)	640
BsrI	ACTGG	5 cut(s)	568, 837, 939, 985, 1020
BssECI	CCNNGG	4 cut(s)	189, 190, 332, 988
BssMI	GATC	3 cut(s)	269, 322, 591
Bst2UI	CCWGG	4 cut(s)	191, 620, 770, 990
Bst4CI	ACNGT	1 cut(s)	732
BstAPI	GCANNNNNTGC	2 cut(s)	226, 782
BstAUI	TGTACA	1 cut(s)	640
BstC8I	GCNNGC	3 cut(s)	85, 304, 940
BstDEI	CTNAG	7 cut(s)	200, 338, 384, 414, 627, 801, 1075
BstF5I	GGATG	5 cut(s)	241, 283, 538, 858, 1113
BstKTI	GATC	3 cut(s)	272, 325, 594
BstMAI	GTCTC	1 cut(s)	1056
BstMBI	GATC	3 cut(s)	269, 322, 591
BstMWI	GCNNNNNNNGC	6 cut(s)	226, 673, 682, 755, 779, 782
BstNI	CCWGG	4 cut(s)	191, 620, 770, 990
BstSCI	CCNGG	6 cut(s)	189, 292, 332, 618, 768, 988
BstSFI	CTRYAG	2 cut(s)	728, 900
BstSLI	GKGCMC	2 cut(s)	255, 925
BstV2I	GAAGAC	2 cut(s)	561, 667
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	4 cut(s)	396, 447, 857, 1045
BtsCI	GGATG	5 cut(s)	241, 283, 538, 858, 1113
BtsIMutI	CAGTG	4 cut(s)	271, 561, 844, 1013
BveI	ACCTGC	1 cut(s)	297
Cac8I	GCNNGC	3 cut(s)	85, 304, 940
Cfr13I	GGNCC	3 cut(s)	395, 856, 1044
CseI	GACGC	1 cut(s)	383
CsiI	ACCWGGT	1 cut(s)	618
Csp6I	GTAC	6 cut(s)	125, 208, 282, 641, 724, 932
CspCI	CAANNNNNGTGG	2 cut(s)	35, 70
CviAII	CATG	4 cut(s)	359, 668, 1087, 1125
CviQI	GTAC	6 cut(s)	125, 208, 282, 641, 724, 932
DdeI	CTNAG	7 cut(s)	200, 338, 384, 414, 627, 801, 1075
DpnI	GATC	3 cut(s)	271, 324, 593
DpnII	GATC	3 cut(s)	269, 322, 591
DraI	TTTAAA	1 cut(s)	508
DriI	GACNNNNNGTC	1 cut(s)	565
Eam1105I	GACNNNNNGTC	1 cut(s)	565
EciI	GGCGGA	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	355
Eco147I	AGGCCT	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	461, 1036
EcoICRI	GAGCTC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	1044
EcoRII	CCWGG	4 cut(s)	189, 618, 768, 988
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	4 cut(s)	362, 671, 1090, 1128
FatI	CATG	4 cut(s)	358, 667, 1086, 1124
FokI	GGATG	5 cut(s)	248, 290, 545, 865, 1120
FriOI	GRGCYC	1 cut(s)	357
FspBI	CTAG	2 cut(s)	95, 491
GsaI	CCCAGC	1 cut(s)	789
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	4 cut(s)	396, 447, 857, 1045
HapII	CCGG	2 cut(s)	293, 334
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	4 cut(s)	362, 671, 1090, 1128
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	4 cut(s)	185, 382, 512, 1064
HpaII	CCGG	2 cut(s)	293, 334
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	5 cut(s)	100, 345, 373, 641, 1013
Hpy188I	TCNGA	6 cut(s)	315, 327, 480, 762, 817, 892
Hpy188III	TCNNGA	3 cut(s)	11, 557, 585
Hpy8I	GTNNAC	5 cut(s)	100, 345, 373, 641, 1013
HpyAV	CCTTC	5 cut(s)	148, 485, 523, 704, 1057
HpyCH4III	ACNGT	1 cut(s)	732
HpyF10VI	GCNNNNNNNGC	6 cut(s)	226, 673, 682, 755, 779, 782
HpyF3I	CTNAG	7 cut(s)	200, 338, 384, 414, 627, 801, 1075
Hsp92II	CATG	4 cut(s)	362, 671, 1090, 1128
Kzo9I	GATC	3 cut(s)	269, 322, 591
LmnI	GCTCC	2 cut(s)	352, 360
LweI	GCATC	3 cut(s)	289, 523, 951
MabI	ACCWGGT	1 cut(s)	618
MaeI	CTAG	2 cut(s)	95, 491
MaeIII	GTNAC	3 cut(s)	379, 622, 839
MalI	GATC	3 cut(s)	271, 324, 593
MboI	GATC	3 cut(s)	269, 322, 591
MboII	GAAGA	7 cut(s)	133, 136, 561, 672, 818, 1042, 1042
MfeI	CAATTG	1 cut(s)	949
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	3 cut(s)	255, 357, 925
MluCI	AATT	4 cut(s)	52, 59, 894, 949
MlyI	GAGTC	2 cut(s)	376, 1058
MmeI	TCCRAC	2 cut(s)	213, 255
MseI	TTAA	2 cut(s)	507, 828
MslI	CAYNNNNRTG	1 cut(s)	875
MspA1I	CMGCKG	1 cut(s)	676
MspI	CCGG	2 cut(s)	293, 334
MspR9I	CCNGG	6 cut(s)	191, 294, 334, 620, 770, 990
MunI	CAATTG	1 cut(s)	949
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	4 cut(s)	191, 620, 770, 990
MwoI	GCNNNNNNNGC	6 cut(s)	226, 673, 682, 755, 779, 782
NciI	CCSGG	2 cut(s)	294, 334
NdeII	GATC	3 cut(s)	269, 322, 591
NlaIII	CATG	4 cut(s)	362, 671, 1090, 1128
NlaIV	GGNNCC	2 cut(s)	324, 858
NmuCI	GTSAC	2 cut(s)	379, 839
PasI	CCCWGGG	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	447
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	185, 512
PleI	GAGTC	2 cut(s)	376, 1058
PpsI	GAGTC	2 cut(s)	376, 1058
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	4 cut(s)	189, 618, 768, 988
PspFI	CCCAGC	1 cut(s)	785
PspGI	CCWGG	4 cut(s)	189, 618, 768, 988
PspN4I	GGNNCC	2 cut(s)	324, 858
PspPI	GGNCC	3 cut(s)	395, 856, 1044
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	6 cut(s)	126, 209, 283, 642, 725, 933
RsaNI	GTAC	6 cut(s)	125, 208, 282, 641, 724, 932
RseI	CAYNNNNRTG	1 cut(s)	875
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	507, 828
Sau3AI	GATC	3 cut(s)	269, 322, 591
Sau96I	GGNCC	3 cut(s)	395, 856, 1044
SchI	GAGTC	2 cut(s)	376, 1058
ScrFI	CCNGG	6 cut(s)	191, 294, 334, 620, 770, 990
SduI	GDGCHC	3 cut(s)	255, 357, 925
SexAI	ACCWGGT	1 cut(s)	618
SfaNI	GCATC	3 cut(s)	289, 523, 951
SfcI	CTRYAG	2 cut(s)	728, 900
SmiMI	CAYNNNNRTG	1 cut(s)	875
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	4 cut(s)	52, 59, 894, 949
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	1 cut(s)	350
SspI	AATATT	1 cut(s)	1120
SspMI	CTAG	2 cut(s)	95, 491
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	6 cut(s)	189, 292, 332, 618, 768, 988
TaaI	ACNGT	1 cut(s)	732
TaqI	TCGA	2 cut(s)	487, 527
TasI	AATT	4 cut(s)	52, 59, 894, 949
TatI	WGTACW	4 cut(s)	124, 207, 640, 931
TfiI	GAWTC	2 cut(s)	185, 512
Tru1I	TTAA	2 cut(s)	507, 828
Tru9I	TTAA	2 cut(s)	507, 828
TscAI	CASTG	4 cut(s)	271, 568, 844, 1020
TseFI	GTSAC	2 cut(s)	379, 839
Tsp45I	GTSAC	2 cut(s)	379, 839
TspDTI	ATGAA	1 cut(s)	1043
TspGWI	ACGGA	2 cut(s)	270, 335
TspRI	CASTG	4 cut(s)	271, 568, 844, 1020
XapI	RAATTY	1 cut(s)	59
XspI	CTAG	2 cut(s)	95, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.