Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009159

Physical Location & Seq

Genomic Coordinates Reverse (-)

43254500 .. 43258890

Gene Structure 4391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCCCTTTGTTTTACTCATAATCAATATTCTCTCTCTCTTACACACTTCAAAGCTCACACCCCCCATTTCCTCCAATCCTGTACTTGCTTCCTCCTCCTCCTCCTTTCCCTCTGCAACTCTCGGGGCTCCGAGCCCCGAATCCCAGGTACCCATTTCGCCTCAAGGCTACTCCTCCAACCTTCCTGACCCAAGTTTTCCATCACTTTTTGAACAACTTAATTTTTGTGGGTTTTGTTTAATTCAGGGAAGCTTGAGAATGTACTCTGCTTTGCATTCTCTGCCGTTGGATGGGGGTGTTTGTGGGCACGGAGAGTTCAGTGGATCGTTGGATGGTACAAACCTGCCGGGTGATGCTTGCTTGGTTCTGACTACGGATCCGAAGCCCCGGCTGAGGTGGACGGCGGAGCTCCATGAGAGGTTTGTGGACGCTGTGACTCAGCTTGGTGGCCCTGACAAAGCGACACCTAAGACCATTATGAGAACAATGGGAGTAAAAGGCCTTACCCTATATCACTTGAAATCACACCTTCAGAAATATCGACTAGGGAAGCAATCGTTTAAAGAATCAACTGAAAACTCGAAGGATGTTGGGATTGCAGCTTCTTGCATTGCTGAAAGTCAGGACACTGGGTCTTCGGCAACCTCATCAAGAGTGATCGCCCAAGATTTGAATGATGGCTACCAGGTTACTGAGGCTTTGCGTGTACAAATGGAAGTGCAAAGAAGACTGCATGAGCAGCTGGAGGTGCAGCGTCGCCTTCAACTTCGTATTGAAGCACAGGGAAAGTACCTACAGTCTATACTTGAGAAAGCTTGTAAGGCTCTGAATGACCAGGCTGCAACTGCTGCTGGGCTTGAAGCTGCTAAGGAAGAACTCTCTGAACTTGCTATTAAGGTTTCCAGTGACTGTCAAGGGATGGCCCCACTTGATACCATAAAAATGCAGTCCTTGTCTGAAATTGCTGCAGCAATAGAGAACAAAAGTGCCCCAAATGTACTGGCTCGCATCGGCAATTGCTCTGTTGATAGCTGCTTGACATCAACTGGAAGCCCTGGTTCTCCAATGGGTATGAGTTCACTGGCTGCTGCTATGAAGAAAAGGCAAAGGCCCTTCTTCAGCAATGGAGACTCGTTGCCCTTAGAGGGCAACATGAGGCAAGAAGTAGAATGGATGATGAGTAATATTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009566 GO:0009567 GO:0009605 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016036 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

397

Amino Acids

42.67

Weight (kDa)

6.2

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	130 - 181	2.4e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	229 - 275	1.6e-26	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24120 AT3G24120 AT4G13640 AT4G13640
fragaria_vesca	FvH4_4g15780 FvH4_4g15780 FvH4_4g15780 FvH4_4g15780
malus_domestica	MD04G1008300.v1.1
prunus_persica	Prupe.1G007000_v2.0.a1
pyrus_communis	pycom04g00620 pycom420g01410
rosa_chinensis	RchiOBHm_Chr4g0415391
rosa_laevigata	RLG00000008073
rosa_roxburghii	Rroxscaffold_5G00359150
rosa_rugosa	Rorug04G0133900 Rorug04G0134000
rosa_samantha	Rh4AG194400 Rh4BG193000 Rh4CG205400 Rh4DG192100
rosa_wichuraiana	Rw4G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
Acc65I	GGTACC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	148
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	3 cut(s)	331, 371, 384
AcuI	CTGAAG	2 cut(s)	515, 1102
AfaI	GTAC	7 cut(s)	84, 150, 263, 337, 708, 791, 999
AfiI	CCNNNNNNNGG	3 cut(s)	290, 393, 1145
AgsI	TTSAA	7 cut(s)	51, 212, 520, 673, 764, 776, 860
AhdI	GACNNNNNGTC	1 cut(s)	631
AjnI	CCWGG	4 cut(s)	144, 684, 834, 1054
AluBI	AGCT	9 cut(s)	55, 252, 409, 442, 602, 742, 815, 863, 1032
AluI	AGCT	9 cut(s)	55, 252, 409, 442, 602, 742, 815, 863, 1032
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	1122
AlwI	GGATC	3 cut(s)	331, 371, 384
AlwNI	CAGNNNCTG	1 cut(s)	909
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	4 cut(s)	448, 499, 921, 1109
Asp718I	GGTACC	1 cut(s)	148
AspS9I	GGNCC	3 cut(s)	449, 922, 1110
AsuC2I	CCSGG	2 cut(s)	348, 388
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	122
BaeGI	GKGCMC	2 cut(s)	309, 991
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	3 cut(s)	130, 137, 411
BbsI	GAAGAC	2 cut(s)	627, 733
Bbv12I	GWGCWC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	392
BccI	CCATC	5 cut(s)	208, 284, 326, 671, 913
BceAI	ACGGC	2 cut(s)	268, 417
BciT130I	CCWGG	4 cut(s)	146, 686, 836, 1056
BcnI	CCSGG	2 cut(s)	348, 388
BcoDI	GTCTC	1 cut(s)	1122
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	2 cut(s)	794, 966
BfuAI	ACCTGC	1 cut(s)	351
Bme1390I	CCNGG	6 cut(s)	146, 348, 388, 686, 836, 1056
BmeRI	GACNNNNNGTC	1 cut(s)	631
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	3 cut(s)	449, 922, 1110
BmiI	GGNNCC	4 cut(s)	129, 150, 378, 924
BmrFI	CCNGG	6 cut(s)	146, 348, 388, 686, 836, 1056
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	2 cut(s)	343, 1017
BmuI	ACTGGG	1 cut(s)	639
BpiI	GAAGAC	2 cut(s)	627, 733
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	2 cut(s)	392, 867
BpuEI	CTTGAG	3 cut(s)	147, 274, 827
BpuMI	CCSGG	2 cut(s)	348, 388
BsaJI	CCNNGG	3 cut(s)	144, 386, 1054
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 393, 1145
Bse1I	ACTGG	5 cut(s)	634, 903, 1005, 1051, 1086
Bse3DI	GCAATG	2 cut(s)	609, 1129
BseBI	CCWGG	4 cut(s)	146, 686, 836, 1056
BseDI	CCNNGG	3 cut(s)	144, 386, 1054
BseGI	GGATG	5 cut(s)	295, 337, 592, 924, 1179
BseLI	CCNNNNNNNGG	3 cut(s)	290, 393, 1145
BseMI	GCAATG	2 cut(s)	609, 1129
BseMII	CTCAG	3 cut(s)	383, 452, 684
BseNI	ACTGG	5 cut(s)	634, 903, 1005, 1051, 1086
BseRI	GAGGAG	4 cut(s)	85, 88, 91, 163
BseSI	GKGCMC	2 cut(s)	309, 991
BseYI	CCCAGC	1 cut(s)	851
BsgI	GTGCAG	1 cut(s)	770
BshFI	GGCC	4 cut(s)	450, 501, 923, 1111
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	347, 388
BslI	CCNNNNNNNGG	3 cut(s)	290, 393, 1145
BsmAI	GTCTC	1 cut(s)	1122
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	4 cut(s)	450, 501, 923, 1111
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	5 cut(s)	130, 137, 309, 411, 991
Bsp1407I	TGTACA	1 cut(s)	706
Bsp143I	GATC	3 cut(s)	323, 376, 657
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	4 cut(s)	450, 501, 923, 1111
BspCNI	CTCAG	3 cut(s)	384, 451, 685
BspLI	GGNNCC	4 cut(s)	129, 150, 378, 924
BspMAI	CTGCAG	1 cut(s)	970
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	3 cut(s)	331, 371, 384
BspT107I	GGYRCC	1 cut(s)	148
BsrDI	GCAATG	2 cut(s)	609, 1129
BsrGI	TGTACA	1 cut(s)	706
BsrI	ACTGG	5 cut(s)	634, 903, 1005, 1051, 1086
BssECI	CCNNGG	3 cut(s)	144, 386, 1054
BssMI	GATC	3 cut(s)	323, 376, 657
Bst2UI	CCWGG	4 cut(s)	146, 686, 836, 1056
Bst4CI	ACNGT	2 cut(s)	798, 911
BstAPI	GCANNNNNTGC	2 cut(s)	280, 848
BstAUI	TGTACA	1 cut(s)	706
BstC8I	GCNNGC	2 cut(s)	358, 1006
BstDEI	CTNAG	6 cut(s)	392, 438, 468, 693, 867, 1141
BstF5I	GGATG	5 cut(s)	295, 337, 592, 924, 1179
BstKTI	GATC	3 cut(s)	326, 379, 660
BstMAI	GTCTC	1 cut(s)	1122
BstMBI	GATC	3 cut(s)	323, 376, 657
BstMWI	GCNNNNNNNGC	6 cut(s)	280, 739, 748, 821, 845, 848
BstNI	CCWGG	4 cut(s)	146, 686, 836, 1056
BstSCI	CCNGG	6 cut(s)	144, 346, 386, 684, 834, 1054
BstSFI	CTRYAG	2 cut(s)	794, 966
BstSLI	GKGCMC	2 cut(s)	309, 991
BstV2I	GAAGAC	2 cut(s)	627, 733
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	4 cut(s)	450, 501, 923, 1111
BtsCI	GGATG	5 cut(s)	295, 337, 592, 924, 1179
BtsIMutI	CAGTG	4 cut(s)	325, 627, 910, 1079
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	358, 1006
CaiI	CAGNNNCTG	1 cut(s)	909
Cfr13I	GGNCC	3 cut(s)	449, 922, 1110
CseI	GACGC	2 cut(s)	437, 743
CsiI	ACCWGGT	1 cut(s)	684
Csp6I	GTAC	7 cut(s)	83, 149, 262, 336, 707, 790, 998
CviAII	CATG	4 cut(s)	413, 734, 1153, 1191
CviQI	GTAC	7 cut(s)	83, 149, 262, 336, 707, 790, 998
DdeI	CTNAG	6 cut(s)	392, 438, 468, 693, 867, 1141
DpnI	GATC	3 cut(s)	325, 378, 659
DpnII	GATC	3 cut(s)	323, 376, 657
DraI	TTTAAA	1 cut(s)	562
DriI	GACNNNNNGTC	1 cut(s)	631
Eam1105I	GACNNNNNGTC	1 cut(s)	631
EciI	GGCGGA	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	501
Eco24I	GRGCYC	3 cut(s)	130, 137, 411
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	2 cut(s)	515, 1102
Eco88I	CYCGRG	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	1110
EcoRII	CCWGG	4 cut(s)	144, 684, 834, 1054
EcoT38I	GRGCYC	3 cut(s)	130, 137, 411
FaeI	CATG	4 cut(s)	416, 737, 1156, 1194
FatI	CATG	4 cut(s)	412, 733, 1152, 1190
FokI	GGATG	5 cut(s)	302, 344, 599, 931, 1186
FriOI	GRGCYC	3 cut(s)	130, 137, 411
FspBI	CTAG	1 cut(s)	545
GsaI	CCCAGC	1 cut(s)	855
GsuI	CTGGAG	1 cut(s)	764
HaeIII	GGCC	4 cut(s)	450, 501, 923, 1111
HapII	CCGG	2 cut(s)	347, 388
HgaI	GACGC	2 cut(s)	437, 743
Hin1II	CATG	4 cut(s)	416, 737, 1156, 1194
HindIII	AAGCTT	2 cut(s)	250, 813
HinfI	GANTC	4 cut(s)	140, 436, 566, 1130
HpaII	CCGG	2 cut(s)	347, 388
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	4 cut(s)	399, 427, 707, 1079
Hpy188I	TCNGA	7 cut(s)	132, 369, 381, 534, 828, 883, 958
Hpy188III	TCNNGA	3 cut(s)	185, 623, 651
Hpy8I	GTNNAC	4 cut(s)	399, 427, 707, 1079
Hpy99I	CGWCG	1 cut(s)	759
HpyAV	CCTTC	5 cut(s)	191, 539, 577, 770, 1123
HpyCH4III	ACNGT	2 cut(s)	798, 911
HpyF10VI	GCNNNNNNNGC	6 cut(s)	280, 739, 748, 821, 845, 848
HpyF3I	CTNAG	6 cut(s)	392, 438, 468, 693, 867, 1141
Hsp92II	CATG	4 cut(s)	416, 737, 1156, 1194
KpnI	GGTACC	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	323, 376, 657
LmnI	GCTCC	3 cut(s)	133, 406, 414
LweI	GCATC	2 cut(s)	343, 1017
MabI	ACCWGGT	1 cut(s)	684
MaeI	CTAG	1 cut(s)	545
MaeIII	GTNAC	3 cut(s)	433, 688, 905
MalI	GATC	3 cut(s)	325, 378, 659
MboI	GATC	3 cut(s)	323, 376, 657
MboII	GAAGA	5 cut(s)	627, 738, 884, 1108, 1108
MfeI	CAATTG	1 cut(s)	1015
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	5 cut(s)	130, 137, 309, 411, 991
MluCI	AATT	4 cut(s)	220, 240, 960, 1015
MlyI	GAGTC	2 cut(s)	430, 1124
MmeI	TCCRAC	3 cut(s)	201, 267, 309
MseI	TTAA	4 cut(s)	219, 239, 561, 894
MslI	CAYNNNNRTG	1 cut(s)	941
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	2 cut(s)	347, 388
MspR9I	CCNGG	6 cut(s)	146, 348, 388, 686, 836, 1056
MunI	CAATTG	1 cut(s)	1015
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	4 cut(s)	146, 686, 836, 1056
MwoI	GCNNNNNNNGC	6 cut(s)	280, 739, 748, 821, 845, 848
NciI	CCSGG	2 cut(s)	348, 388
NdeII	GATC	3 cut(s)	323, 376, 657
NlaIII	CATG	4 cut(s)	416, 737, 1156, 1194
NlaIV	GGNNCC	4 cut(s)	129, 150, 378, 924
NmuCI	GTSAC	2 cut(s)	433, 905
PceI	AGGCCT	1 cut(s)	501
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	140, 566
PleI	GAGTC	2 cut(s)	430, 1124
PpsI	GAGTC	2 cut(s)	430, 1124
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	4 cut(s)	144, 684, 834, 1054
PspFI	CCCAGC	1 cut(s)	851
PspGI	CCWGG	4 cut(s)	144, 684, 834, 1054
PspN4I	GGNNCC	4 cut(s)	129, 150, 378, 924
PspPI	GGNCC	3 cut(s)	449, 922, 1110
PstI	CTGCAG	1 cut(s)	970
PstNI	CAGNNNCTG	1 cut(s)	909
PsuI	RGATCY	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	742
RsaI	GTAC	7 cut(s)	84, 150, 263, 337, 708, 791, 999
RsaNI	GTAC	7 cut(s)	83, 149, 262, 336, 707, 790, 998
RseI	CAYNNNNRTG	1 cut(s)	941
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	219, 239, 561, 894
Sau3AI	GATC	3 cut(s)	323, 376, 657
Sau96I	GGNCC	3 cut(s)	449, 922, 1110
SchI	GAGTC	2 cut(s)	430, 1124
ScrFI	CCNGG	6 cut(s)	146, 348, 388, 686, 836, 1056
SduI	GDGCHC	5 cut(s)	130, 137, 309, 411, 991
SexAI	ACCWGGT	1 cut(s)	684
SfaNI	GCATC	2 cut(s)	343, 1017
SfcI	CTRYAG	2 cut(s)	794, 966
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	3 cut(s)	162, 253, 806
SmoI	CTYRAG	3 cut(s)	162, 253, 806
Sse9I	AATT	4 cut(s)	220, 240, 960, 1015
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	1 cut(s)	404
SspI	AATATT	2 cut(s)	28, 1186
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	411
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	6 cut(s)	144, 346, 386, 684, 834, 1054
TaaI	ACNGT	2 cut(s)	798, 911
TaqI	TCGA	2 cut(s)	541, 581
TasI	AATT	4 cut(s)	220, 240, 960, 1015
TatI	WGTACW	4 cut(s)	82, 261, 706, 997
TfiI	GAWTC	2 cut(s)	140, 566
Tru1I	TTAA	4 cut(s)	219, 239, 561, 894
Tru9I	TTAA	4 cut(s)	219, 239, 561, 894
TscAI	CASTG	4 cut(s)	325, 634, 910, 1086
TseFI	GTSAC	2 cut(s)	433, 905
Tsp45I	GTSAC	2 cut(s)	433, 905
TspDTI	ATGAA	1 cut(s)	1109
TspGWI	ACGGA	2 cut(s)	324, 389
TspRI	CASTG	4 cut(s)	325, 634, 910, 1086
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.