AT3G24150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007775
Physical Location & Seq
Reverse (-)
8724097 .. 8725986
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24150.1

Sequence Viewer

Length: 1032 bp
ATGCCGAGGCCAGGACCAAGACCTTACGAGTGTGTGAAACGAGCTTGGCATAGCGATCGTCATCAACCTATTCGTGGTTCGATTATTCGCCAGATTTTCAGACTCGCAATGGAAGCACATAGCGCAGCGACGAGGAAGAACAAAGAATGGCAGGAGAAATTGCCTGTGGTTGTGTTAAAAGCTGAAGAAATCATGTACTCTAAAGCCAATTCCGAGGAAGAGTATACAGATGCTGATACTATGTGGAATAGAGTAAATGATGCCATTGATACAATTATTAGAAGAGATGAGAGTACAGAAACTGGTCCTCTTTTGCCTCCATGTGTTGAAGCTGCTCTTAATTTGGGATGTATTGCTGTAAGAGCTTCAAGAAGCCAACGACATAGTAGCGGAAGGACTTACCTCGGTCCTAAAATTCAGGAACCGGTTTCTGCGTCGACTAATGAGCCGTCTTACCATCATGAATATCGTCAGCAAGCTCAACAATCATCAACCAAACCAAGCCAGACAGTTCAAGCTGCAGTCCCTGTTGATGTACTTGATAACAGCAACAAGCGTGTAGCTACTCCTCGCGGTTACCCGTTTCTTCATGAATCCATGCAGATGCATCAAAAGCCATTGGCAATTAGACAAGGAACTGGTCCTGCTTCTGCTCCTGCTCCAGCTCCAGTCAACTTGGGTTCGGTCTATCCTTTGTATTACGAAGGTAATAATCAAACGCAGCAAGCTGACATGTCTTTTAGAGTCCCTGAAGCGCCCATAATCATTGGCATGCCTATTGGTATAAAGCCCTCAGAAGAAGCAACTGAGAGGGTCTGTGATTTATCCTTGAGGCTCGGTATATCTTCAGAACCGTCTACAAGAATAGATGTCGGGTCTAGTCGGGCTTACCCGGGAAGAAACCAAGAAGAGTTATGTTTATTCGCAGAGGTAAAGAAGAATGATAGGTTTGAATGGTTTTCAAATAGTGAAGGTCAGAATTCAGATTCGAGAGTTAAAAAGCACAGAACTTTGTGTGGAGACTTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

38.45

Weight (kDa)

8.16

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 224, 437, 857
AccII CGCG 1 cut(s) 573
AciI CCGC 2 cut(s) 390, 573
AcsI RAATTY 2 cut(s) 414, 979
AcuI CTGAAG 3 cut(s) 204, 771, 831
AfaI GTAC 3 cut(s) 197, 295, 537
AfiI CCNNNNNNNGG 2 cut(s) 11, 74
AflIII ACRYGT 1 cut(s) 732
AgeI ACCGGT 1 cut(s) 424
AgsI TTSAA 5 cut(s) 329, 369, 515, 953, 963
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 9 cut(s) 44, 182, 332, 365, 479, 518, 563, 665, 728
AluI AGCT 9 cut(s) 44, 182, 332, 365, 479, 518, 563, 665, 728
Alw26I GTCTC 1 cut(s) 1014
AlwNI CAGNNNCTG 3 cut(s) 233, 302, 527
Ama87I CYCGRG 1 cut(s) 892
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 4 cut(s) 125, 332, 518, 721
ApoI RAATTY 2 cut(s) 414, 979
AsiGI ACCGGT 1 cut(s) 424
AspLEI GCGC 2 cut(s) 125, 757
AspS9I GGNCC 4 cut(s) 14, 305, 407, 641
AsuC2I CCSGG 2 cut(s) 893, 894
AvaI CYCGRG 1 cut(s) 892
AvaII GGWCC 4 cut(s) 14, 305, 407, 641
BbvI GCAGC 4 cut(s) 137, 319, 505, 733
BccI CCATC 1 cut(s) 465
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 2 cut(s) 893, 894
BcoDI GTCTC 1 cut(s) 1014
BfaI CTAG 1 cut(s) 879
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 758
BisI GCNGC 4 cut(s) 126, 333, 519, 722
BlsI GCNGC 4 cut(s) 127, 334, 520, 723
Bme1390I CCNGG 3 cut(s) 12, 893, 894
Bme18I GGWCC 4 cut(s) 14, 305, 407, 641
BmeT110I CYCGRG 1 cut(s) 892
BmgT120I GGNCC 4 cut(s) 14, 305, 407, 641
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 3 cut(s) 12, 893, 894
BmsI GCATC 4 cut(s) 220, 250, 594, 616
BpmI CTGGAG 2 cut(s) 645, 651
BpuEI CTTGAG 1 cut(s) 850
BpuMI CCSGG 2 cut(s) 893, 894
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 5, 213, 403, 892
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 74
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 3 cut(s) 307, 643, 668
Bse3DI GCAATG 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 4 cut(s) 5, 213, 403, 892
BseGI GGATG 1 cut(s) 353
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 11, 74
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 798, 807
BseNI ACTGG 3 cut(s) 307, 643, 668
BseRI GAGGAG 1 cut(s) 558
BseXI GCAGC 4 cut(s) 137, 319, 505, 733
Bsh1236I CGCG 1 cut(s) 573
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 10
BshTI ACCGGT 1 cut(s) 424
BsiEI CGRYCG 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 892
BsiSI CCGG 2 cut(s) 425, 893
BslFI GGGAC 2 cut(s) 509, 731
BslI CCNNNNNNNGG 2 cut(s) 11, 74
BsmAI GTCTC 1 cut(s) 1014
BsmFI GGGAC 2 cut(s) 509, 731
BsnI GGCC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 892
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 2 cut(s) 390, 573
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 799, 806
BspFNI CGCG 1 cut(s) 573
BspHI TCATGA 2 cut(s) 460, 589
BspLI GGNNCC 1 cut(s) 423
BspMAI CTGCAG 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 3 cut(s) 307, 643, 668
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 4 cut(s) 5, 213, 403, 892
BssMI GATC 1 cut(s) 55
BssNAI GTATAC 1 cut(s) 225
Bst1107I GTATAC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 511, 855
Bst6I CTCTTC 3 cut(s) 213, 277, 903
BstC8I GCNNGC 3 cut(s) 477, 726, 773
BstDEI CTNAG 2 cut(s) 793, 807
BstEII GGTNACC 1 cut(s) 575
BstF5I GGATG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 573
BstH2I RGCGCY 1 cut(s) 758
BstHHI GCGC 2 cut(s) 125, 757
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 1014
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 4 cut(s) 113, 122, 362, 613
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 2 cut(s) 736, 775
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 3 cut(s) 10, 891, 892
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 1 cut(s) 573
BstV1I GCAGC 4 cut(s) 137, 319, 505, 733
BstZ17I GTATAC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 353
Cac8I GCNNGC 3 cut(s) 477, 726, 773
CaiI CAGNNNCTG 3 cut(s) 233, 302, 527
CciI TCATGA 2 cut(s) 460, 589
CfoI GCGC 2 cut(s) 125, 757
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 4 cut(s) 14, 305, 407, 641
Cfr9I CCCGGG 1 cut(s) 892
CseI GACGC 1 cut(s) 423
Csp6I GTAC 3 cut(s) 196, 294, 536
CspAI ACCGGT 1 cut(s) 424
CviAII CATG 7 cut(s) 193, 321, 461, 590, 598, 733, 772
CviQI GTAC 3 cut(s) 196, 294, 536
DdeI CTNAG 2 cut(s) 793, 807
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 213, 277, 903
EarI CTCTTC 3 cut(s) 213, 277, 903
Eco47I GGWCC 4 cut(s) 14, 305, 407, 641
Eco57I CTGAAG 3 cut(s) 204, 771, 831
Eco88I CYCGRG 1 cut(s) 892
Eco91I GGTNACC 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 979
EcoRII CCWGG 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 609
FaeI CATG 7 cut(s) 196, 324, 464, 593, 601, 736, 775
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 2 cut(s) 509, 731
FatI CATG 7 cut(s) 192, 320, 460, 589, 597, 732, 771
FblI GTMKAC 3 cut(s) 224, 437, 857
Fnu4HI GCNGC 4 cut(s) 126, 333, 519, 722
FokI GGATG 1 cut(s) 360
Fsp4HI GCNGC 4 cut(s) 126, 333, 519, 722
FspBI CTAG 1 cut(s) 879
GlaI GCGC 2 cut(s) 124, 756
GluI GCNGC 4 cut(s) 126, 333, 519, 722
GsuI CTGGAG 2 cut(s) 645, 651
HaeII RGCGCY 1 cut(s) 758
HaeIII GGCC 1 cut(s) 10
HapII CCGG 2 cut(s) 425, 893
HgaI GACGC 1 cut(s) 423
HhaI GCGC 2 cut(s) 125, 757
Hin1II CATG 7 cut(s) 196, 324, 464, 593, 601, 736, 775
Hin6I GCGC 2 cut(s) 123, 755
HinP1I GCGC 2 cut(s) 123, 755
HincII GTYRAC 2 cut(s) 438, 673
HindII GTYRAC 2 cut(s) 438, 673
HinfI GANTC 4 cut(s) 102, 593, 744, 986
HpaII CCGG 2 cut(s) 425, 893
Hpy166II GTNNAC 4 cut(s) 225, 438, 673, 858
Hpy188I TCNGA 6 cut(s) 101, 214, 796, 850, 978, 985
Hpy188III TCNNGA 5 cut(s) 369, 419, 461, 590, 990
Hpy8I GTNNAC 4 cut(s) 225, 438, 673, 858
Hpy99I CGWCG 2 cut(s) 133, 439
HpyAV CCTTC 3 cut(s) 387, 698, 965
HpyCH4III ACNGT 2 cut(s) 511, 855
HpyCH4V TGCA 3 cut(s) 521, 601, 607
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 122, 362, 613
HpyF3I CTNAG 2 cut(s) 793, 807
Hsp92II CATG 7 cut(s) 196, 324, 464, 593, 601, 736, 775
HspAI GCGC 2 cut(s) 123, 755
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 3 cut(s) 658, 664, 670
Lsp1109I GCAGC 4 cut(s) 137, 319, 505, 733
LweI GCATC 4 cut(s) 220, 250, 594, 616
MaeI CTAG 1 cut(s) 879
MaeIII GTNAC 1 cut(s) 575
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MluCI AATT 7 cut(s) 158, 208, 273, 340, 414, 624, 979
MlyI GAGTC 2 cut(s) 96, 753
Mph1103I ATGCAT 1 cut(s) 609
MseI TTAA 3 cut(s) 176, 339, 996
MslI CAYNNNNRTG 2 cut(s) 602, 770
MspI CCGG 2 cut(s) 425, 893
MspR9I CCNGG 3 cut(s) 12, 893, 894
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 4 cut(s) 113, 122, 362, 613
NciI CCSGG 2 cut(s) 893, 894
NdeII GATC 1 cut(s) 55
NlaIII CATG 7 cut(s) 196, 324, 464, 593, 601, 736, 775
NlaIV GGNNCC 1 cut(s) 423
NmeAIII GCCGAG 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 609
NspI RCATGY 2 cut(s) 736, 775
PaeI GCATGC 1 cut(s) 775
PagI TCATGA 2 cut(s) 460, 589
PciI ACATGT 1 cut(s) 732
PfeI GAWTC 2 cut(s) 593, 986
PinAI ACCGGT 1 cut(s) 424
PkrI GCNGC 4 cut(s) 127, 334, 520, 723
Ple19I CGATCG 1 cut(s) 58
PleI GAGTC 2 cut(s) 96, 752
PpsI GAGTC 2 cut(s) 96, 752
PscI ACATGT 1 cut(s) 732
Psp6I CCWGG 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 575
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 4 cut(s) 14, 305, 407, 641
PstI CTGCAG 1 cut(s) 523
PstNI CAGNNNCTG 3 cut(s) 233, 302, 527
PvuI CGATCG 1 cut(s) 58
RsaI GTAC 3 cut(s) 197, 295, 537
RsaNI GTAC 3 cut(s) 196, 294, 536
RseI CAYNNNNRTG 2 cut(s) 602, 770
SalI GTCGAC 1 cut(s) 436
SaqAI TTAA 3 cut(s) 176, 339, 996
SatI GCNGC 4 cut(s) 126, 333, 519, 722
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 4 cut(s) 14, 305, 407, 641
SchI GAGTC 2 cut(s) 96, 753
ScrFI CCNGG 3 cut(s) 12, 893, 894
SfaNI GCATC 4 cut(s) 220, 250, 594, 616
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 4 cut(s) 14, 305, 407, 641
SmaI CCCGGG 1 cut(s) 894
SmiMI CAYNNNNRTG 2 cut(s) 602, 770
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
SphI GCATGC 1 cut(s) 775
Sse9I AATT 7 cut(s) 158, 208, 273, 340, 414, 624, 979
SsiI CCGC 2 cut(s) 390, 573
SspMI CTAG 1 cut(s) 879
StyD4I CCNGG 3 cut(s) 10, 891, 892
TaaI ACNGT 2 cut(s) 511, 855
TaqI TCGA 3 cut(s) 80, 437, 989
TaqII GACCGA 2 cut(s) 395, 673
TasI AATT 7 cut(s) 158, 208, 273, 340, 414, 624, 979
TatI WGTACW 3 cut(s) 195, 293, 535
TfiI GAWTC 2 cut(s) 593, 986
Tru1I TTAA 3 cut(s) 176, 339, 996
Tru9I TTAA 3 cut(s) 176, 339, 996
TseI GCWGC 4 cut(s) 125, 332, 518, 721
TspDTI ATGAA 3 cut(s) 477, 578, 606
TspMI CCCGGG 1 cut(s) 892
VpaK11BI GGWCC 4 cut(s) 14, 305, 407, 641
XapI RAATTY 2 cut(s) 414, 979
XceI RCATGY 2 cut(s) 736, 775
XmaI CCCGGG 1 cut(s) 892
XmiI GTMKAC 3 cut(s) 224, 437, 857
XspI CTAG 1 cut(s) 879
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.