Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007775

Physical Location & Seq

Genomic Coordinates Forward (+)

1633374 .. 1635600

Gene Structure 2227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGCCAAGGCCAGGTCCAAGGCCCTATGAGTGCGTCAGGCGAGCTTGGCACAGCGATAGGCACCAACCCATGAGAGGCTCCATCATTCAGCAGATGTTCAGGGCTGTCAATGAGGTTCACAGCGCCAAAACCAAGAACAACAAGGAGTGGCAGGAGAAGCTGCCCATGGTGGTTTTTAAAGCAGAGGAAATCATGTACTCCAAAGCCAATTCAGAGGCTGAGTACATCAATTCCGATACACTGTGGGATAGAGCAAATGATGCCATTAACACTATTATTCGAAGAGAGGAGGGCAACGAAACCGGGGACCTTTTGCCGCCGTGTGTTGAAGCTGCGCTTAATTTGGGCTGTGTTGCTGTAAGAGCTTCAAGAAGCCAACGACACAGTAATCCAAGGAGTTACCTCATGCCGAGACCACAAGAACCACCTTCTCCACCCACTAGGGTTTTGGATAGACCATCTGATGAAAGACGTCCTCCGTTTTCTCCTCCACATCACCCGGGAAATCAATCGAACTTTGCAAGACCCTCAACTGTGAATTCTGCACATTTGGTCCCAGAATCCCTTAGTCATGCCAACCAGAGTAGTAACCTGAGTAGCCCTCGGCATTACCCATTTTCAGTTGAGAATGTTCCTGGTGGCCATAACCAGATAACCACAATATCAACCAACAACCAATTGAACTTAGGTTCAGTATATCCATTGTATCATGGATTTAGCTATCCAACTGAAGCACCACAGTTACAGGTCCCAGAGAATGTACATTCTAGAACTATATATGTTGGTACACCAGTTACATCAATTCAGGAGCCTACCAAGAAGCACATTTTCACCTCTCAGAGGGCTGAAAATGTGTCGCACAGAATTCCCCAAGTAGATGTCATGGACATCCAGGAGAAGCCACGAGATGAAGGATATGATTTATCTTTGAGATTGGGTCCTGTCTCACATTTATGTACTGATAGAAGCTTGGCCAGTCAAATGGAAGATATTGGTTCGAGTAATTCTCAAGAGGGTGGAAAGCTCCACAATTATTCACCATCTATAAGTAAGGAGTTCTGTTTCTTTCCTACTAAGACTGCTTATGATCCCTCCGAATCTACTTCAAACATGTGGAATTCAGAGGGTGAAGATCGGAGTTTGGAGGCAACTTTAAGGAAGCGCAAAGCAACTTTTAGAAACAATGAAGAGGATGGGCAATTTTTCAGCCAGCCACCTGGCCAGCCCAACCGGTTTCCTGGTCGATTTACAGGGCCAGGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

47.47

Weight (kDa)

7.29

Isoelectric Point (pI)

62.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24150 AT3G24150
fragaria_vesca	FvH4_1g02850
malus_domestica	MD02G1028200.v1.1 MD15G1169900.v1.1
prunus_persica	Prupe.7G246600_v2.0.a1 Prupe.7G246600_v2.0.a1
pyrus_communis	pycom02g02320 pycom15g15150
rosa_chinensis	RchiOBHm_Chr1g0374351 RchiOBHm_Chr2g0087961
rosa_laevigata	RLG00000015914
rosa_multiflora	Rmu_sc0003275.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153100
rosa_rugosa	Rorug01G0480000 Rorug01G0480100 Rorug01G0480100 Rorug01G0480100
rosa_samantha	Rh2AG034700 Rh2BG033700 Rh2CG034700 Rh2DG034500
rosa_wichuraiana	Rw1G034100 Rw2G002710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	1082
AcoI	YGGCCR	3 cut(s)	640, 972, 1219
AcsI	RAATTY	3 cut(s)	538, 864, 1117
AcuI	CTGAAG	1 cut(s)	750
AcyI	GRCGYC	1 cut(s)	472
AfaI	GTAC	5 cut(s)	197, 224, 762, 787, 958
AfiI	CCNNNNNNNGG	3 cut(s)	11, 74, 840
AflIII	ACRYGT	1 cut(s)	1110
AgeI	ACCGGT	1 cut(s)	1230
AgsI	TTSAA	4 cut(s)	329, 369, 682, 1107
AjnI	CCWGG	6 cut(s)	10, 634, 891, 1216, 1237, 1255
AluBI	AGCT	7 cut(s)	44, 160, 332, 365, 720, 969, 1024
AluI	AGCT	7 cut(s)	44, 160, 332, 365, 720, 969, 1024
Alw26I	GTCTC	2 cut(s)	406, 949
AlwI	GGATC	1 cut(s)	1082
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	6 cut(s)	8, 20, 640, 972, 1219, 1253
ApeKI	GCWGC	2 cut(s)	160, 332
ApoI	RAATTY	3 cut(s)	538, 864, 1117
AsiGI	ACCGGT	1 cut(s)	1230
AspLEI	GCGC	3 cut(s)	125, 337, 1164
AspS9I	GGNCC	7 cut(s)	14, 21, 307, 553, 748, 938, 1253
AsuC2I	CCSGG	3 cut(s)	304, 500, 501
AsuHPI	GGTGA	4 cut(s)	488, 823, 1029, 1139
AsuII	TTCGAA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	5 cut(s)	14, 307, 553, 748, 938
BaeI	ACNNNNGTAYC	2 cut(s)	777, 810
BalI	TGGCCA	3 cut(s)	642, 974, 1221
BanI	GGYRCC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	903
BbvI	GCAGC	2 cut(s)	147, 319
BccI	CCATC	4 cut(s)	89, 466, 1048, 1187
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	6 cut(s)	12, 636, 893, 1218, 1239, 1257
BcnI	CCSGG	3 cut(s)	304, 500, 501
BcoDI	GTCTC	2 cut(s)	406, 949
BfaI	CTAG	2 cut(s)	441, 768
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	3 cut(s)	161, 317, 333
BlsI	GCNGC	3 cut(s)	162, 318, 334
Bme1390I	CCNGG	9 cut(s)	12, 304, 500, 501, 636, 893, 1218, 1239, 1257
Bme18I	GGWCC	5 cut(s)	14, 307, 553, 748, 938
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	7 cut(s)	14, 21, 307, 553, 748, 938, 1253
BmiI	GGNNCC	7 cut(s)	62, 79, 308, 555, 750, 810, 939
BmrFI	CCNGG	9 cut(s)	12, 304, 500, 501, 636, 893, 1218, 1239, 1257
BmsI	GCATC	1 cut(s)	250
BplI	GAGNNNNNCTC	4 cut(s)	586, 618, 991, 1023
Bpu14I	TTCGAA	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	993
BpuMI	CCSGG	3 cut(s)	304, 500, 501
BsaHI	GRCGYC	1 cut(s)	472
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	7 cut(s)	5, 17, 165, 303, 392, 499, 602
BsaWI	WCCGGW	1 cut(s)	1230
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 74, 840
Bse118I	RCCGGY	1 cut(s)	1230
Bse1I	ACTGG	2 cut(s)	791, 975
BseBI	CCWGG	6 cut(s)	12, 636, 893, 1218, 1239, 1257
BseDI	CCNNGG	7 cut(s)	5, 17, 165, 303, 392, 499, 602
BseGI	GGATG	2 cut(s)	888, 1198
BseLI	CCNNNNNNNGG	3 cut(s)	11, 74, 840
BseMII	CTCAG	3 cut(s)	210, 584, 851
BseNI	ACTGG	2 cut(s)	791, 975
BseRI	GAGGAG	2 cut(s)	302, 477
BseXI	GCAGC	2 cut(s)	147, 319
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	6 cut(s)	10, 22, 642, 974, 1221, 1255
BshNI	GGYRCC	1 cut(s)	60
BshTI	ACCGGT	1 cut(s)	1230
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	3 cut(s)	303, 500, 1231
BslFI	GGGAC	3 cut(s)	320, 539, 734
BslI	CCNNNNNNNGG	3 cut(s)	11, 74, 840
BsmAI	GTCTC	2 cut(s)	406, 949
BsmFI	GGGAC	3 cut(s)	320, 539, 734
BsnI	GGCC	6 cut(s)	10, 22, 642, 974, 1221, 1255
Bso31I	GGTCTC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	2 cut(s)	1087, 1132
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	6 cut(s)	10, 22, 642, 974, 1221, 1255
BspCNI	CTCAG	3 cut(s)	211, 585, 850
BspLI	GGNNCC	7 cut(s)	62, 79, 308, 555, 750, 810, 939
BspPI	GGATC	1 cut(s)	1082
BspT104I	TTCGAA	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	1230
BsrGI	TGTACA	1 cut(s)	760
BsrI	ACTGG	2 cut(s)	791, 975
BssAI	RCCGGY	1 cut(s)	1230
BssECI	CCNNGG	7 cut(s)	5, 17, 165, 303, 392, 499, 602
BssMI	GATC	2 cut(s)	1087, 1132
BssNI	GRCGYC	1 cut(s)	472
BssSI	CACGAG	1 cut(s)	903
BssT1I	CCWWGG	4 cut(s)	5, 17, 165, 392
Bst2BI	CACGAG	1 cut(s)	903
Bst2UI	CCWGG	6 cut(s)	12, 636, 893, 1218, 1239, 1257
Bst4CI	ACNGT	4 cut(s)	243, 386, 535, 741
Bst6I	CTCTTC	2 cut(s)	277, 1182
BstACI	GRCGYC	1 cut(s)	472
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	760
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	42, 1211, 1223
BstDEI	CTNAG	6 cut(s)	219, 566, 593, 685, 837, 1074
BstDSI	CCRYGG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	838
BstF5I	GGATG	2 cut(s)	888, 1198
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	3 cut(s)	125, 337, 1164
BstKTI	GATC	2 cut(s)	1090, 1135
BstMAI	GTCTC	2 cut(s)	406, 949
BstMBI	GATC	2 cut(s)	1087, 1132
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 157, 260, 362
BstNI	CCWGG	6 cut(s)	12, 636, 893, 1218, 1239, 1257
BstNSI	RCATGY	1 cut(s)	1114
BstSCI	CCNGG	9 cut(s)	10, 302, 498, 499, 634, 891, 1216, 1237, 1255
BstV1I	GCAGC	2 cut(s)	147, 319
BstXI	CCANNNNNNTGG	2 cut(s)	982, 1217
BsuRI	GGCC	6 cut(s)	10, 22, 642, 974, 1221, 1255
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	888, 1198
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	3 cut(s)	42, 1211, 1223
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	3 cut(s)	125, 337, 1164
Cfr10I	RCCGGY	1 cut(s)	1230
Cfr13I	GGNCC	7 cut(s)	14, 21, 307, 553, 748, 938, 1253
Cfr9I	CCCGGG	1 cut(s)	499
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	5 cut(s)	196, 223, 761, 786, 957
CspAI	ACCGGT	1 cut(s)	1230
CviAII	CATG	8 cut(s)	70, 166, 193, 406, 572, 710, 883, 1111
CviQI	GTAC	5 cut(s)	196, 223, 761, 786, 957
DdeI	CTNAG	6 cut(s)	219, 566, 593, 685, 837, 1074
DpnI	GATC	2 cut(s)	1089, 1134
DpnII	GATC	2 cut(s)	1087, 1132
DraI	TTTAAA	1 cut(s)	178
EaeI	YGGCCR	3 cut(s)	640, 972, 1219
Eam1104I	CTCTTC	2 cut(s)	277, 1182
EarI	CTCTTC	2 cut(s)	277, 1182
Eco130I	CCWWGG	4 cut(s)	5, 17, 165, 392
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	5 cut(s)	14, 307, 553, 748, 938
Eco57I	CTGAAG	1 cut(s)	750
Eco88I	CYCGRG	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	838
EcoO109I	RGGNCCY	4 cut(s)	21, 307, 748, 938
EcoRI	GAATTC	3 cut(s)	538, 864, 1117
EcoRII	CCWGG	6 cut(s)	10, 634, 891, 1216, 1237, 1255
EcoT14I	CCWWGG	4 cut(s)	5, 17, 165, 392
ErhI	CCWWGG	4 cut(s)	5, 17, 165, 392
FaeI	CATG	8 cut(s)	73, 169, 196, 409, 575, 713, 886, 1114
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	3 cut(s)	320, 539, 734
FatI	CATG	8 cut(s)	69, 165, 192, 405, 571, 709, 882, 1110
Fnu4HI	GCNGC	3 cut(s)	161, 317, 333
FokI	GGATG	2 cut(s)	875, 1205
Fsp4HI	GCNGC	3 cut(s)	161, 317, 333
FspBI	CTAG	2 cut(s)	441, 768
GlaI	GCGC	3 cut(s)	124, 336, 1163
GluI	GCNGC	3 cut(s)	161, 317, 333
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	6 cut(s)	10, 22, 642, 974, 1221, 1255
HapII	CCGG	3 cut(s)	303, 500, 1231
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	3 cut(s)	125, 337, 1164
Hin1I	GRCGYC	1 cut(s)	472
Hin1II	CATG	8 cut(s)	73, 169, 196, 409, 575, 713, 886, 1114
Hin6I	GCGC	3 cut(s)	123, 335, 1162
HinP1I	GCGC	3 cut(s)	123, 335, 1162
HindIII	AAGCTT	1 cut(s)	967
HinfI	GANTC	2 cut(s)	560, 1097
HpaII	CCGG	3 cut(s)	303, 500, 1231
HphI	GGTGA	4 cut(s)	488, 823, 1029, 1139
Hpy166II	GTNNAC	2 cut(s)	118, 788
Hpy188I	TCNGA	7 cut(s)	214, 235, 463, 840, 1096, 1123, 1137
Hpy188III	TCNNGA	4 cut(s)	369, 768, 806, 1010
Hpy8I	GTNNAC	2 cut(s)	118, 788
HpyAV	CCTTC	2 cut(s)	438, 905
HpyCH4III	ACNGT	4 cut(s)	243, 386, 535, 741
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	2 cut(s)	521, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 157, 260, 362
HpyF3I	CTNAG	6 cut(s)	219, 566, 593, 685, 837, 1074
HpySE526I	ACGT	1 cut(s)	472
Hsp92I	GRCGYC	1 cut(s)	472
Hsp92II	CATG	8 cut(s)	73, 169, 196, 409, 575, 713, 886, 1114
HspAI	GCGC	3 cut(s)	123, 335, 1162
Kzo9I	GATC	2 cut(s)	1087, 1132
LmnI	GCTCC	3 cut(s)	83, 808, 1029
Lsp1109I	GCAGC	2 cut(s)	147, 319
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	441, 768
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	4 cut(s)	398, 587, 741, 793
MalI	GATC	2 cut(s)	1089, 1134
MboI	GATC	2 cut(s)	1087, 1132
MboII	GAAGA	4 cut(s)	294, 998, 1142, 1199
MfeI	CAATTG	1 cut(s)	677
MlsI	TGGCCA	3 cut(s)	642, 974, 1221
MluNI	TGGCCA	3 cut(s)	642, 974, 1221
MmeI	TCCRAC	1 cut(s)	749
Mox20I	TGGCCA	3 cut(s)	642, 974, 1221
MscI	TGGCCA	3 cut(s)	642, 974, 1221
MseI	TTAA	4 cut(s)	177, 267, 339, 1154
MslI	CAYNNNNRTG	1 cut(s)	952
Msp20I	TGGCCA	3 cut(s)	642, 974, 1221
MspI	CCGG	3 cut(s)	303, 500, 1231
MspR9I	CCNGG	9 cut(s)	12, 304, 500, 501, 636, 893, 1218, 1239, 1257
MunI	CAATTG	1 cut(s)	677
MvaI	CCWGG	6 cut(s)	12, 636, 893, 1218, 1239, 1257
MwoI	GCNNNNNNNGC	4 cut(s)	46, 157, 260, 362
NciI	CCSGG	3 cut(s)	304, 500, 501
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	1087, 1132
NlaIII	CATG	8 cut(s)	73, 169, 196, 409, 575, 713, 886, 1114
NlaIV	GGNNCC	7 cut(s)	62, 79, 308, 555, 750, 810, 939
NmeAIII	GCCGAG	2 cut(s)	435, 583
NspI	RCATGY	1 cut(s)	1114
NspV	TTCGAA	1 cut(s)	280
PciI	ACATGT	1 cut(s)	1110
PfeI	GAWTC	2 cut(s)	560, 1097
PfoI	TCCNGGA	1 cut(s)	891
PinAI	ACCGGT	1 cut(s)	1230
PkrI	GCNGC	3 cut(s)	162, 318, 334
PpuMI	RGGWCCY	3 cut(s)	307, 748, 938
PscI	ACATGT	1 cut(s)	1110
Psp5II	RGGWCCY	3 cut(s)	307, 748, 938
Psp6I	CCWGG	6 cut(s)	10, 634, 891, 1216, 1237, 1255
PspGI	CCWGG	6 cut(s)	10, 634, 891, 1216, 1237, 1255
PspN4I	GGNNCC	7 cut(s)	62, 79, 308, 555, 750, 810, 939
PspPI	GGNCC	7 cut(s)	14, 21, 307, 553, 748, 938, 1253
PspPPI	RGGWCCY	3 cut(s)	307, 748, 938
PstNI	CAGNNNCTG	1 cut(s)	218
RsaI	GTAC	5 cut(s)	197, 224, 762, 787, 958
RsaNI	GTAC	5 cut(s)	196, 223, 761, 786, 957
RseI	CAYNNNNRTG	1 cut(s)	952
SaqAI	TTAA	4 cut(s)	177, 267, 339, 1154
SatI	GCNGC	3 cut(s)	161, 317, 333
Sau3AI	GATC	2 cut(s)	1087, 1132
Sau96I	GGNCC	7 cut(s)	14, 21, 307, 553, 748, 938, 1253
ScrFI	CCNGG	9 cut(s)	12, 304, 500, 501, 636, 893, 1218, 1239, 1257
SfaNI	GCATC	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	5 cut(s)	14, 307, 553, 748, 938
SmaI	CCCGGG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	952
SmlI	CTYRAG	1 cut(s)	1008
SmoI	CTYRAG	1 cut(s)	1008
SsiI	CCGC	1 cut(s)	317
SspMI	CTAG	2 cut(s)	441, 768
StyD4I	CCNGG	9 cut(s)	10, 302, 498, 499, 634, 891, 1216, 1237, 1255
StyI	CCWWGG	4 cut(s)	5, 17, 165, 392
TaaI	ACNGT	4 cut(s)	243, 386, 535, 741
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	4 cut(s)	280, 512, 998, 1243
TatI	WGTACW	4 cut(s)	195, 222, 760, 956
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	560, 1097
Tru1I	TTAA	4 cut(s)	177, 267, 339, 1154
Tru9I	TTAA	4 cut(s)	177, 267, 339, 1154
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	2 cut(s)	160, 332
TspDTI	ATGAA	3 cut(s)	480, 924, 1200
TspGWI	ACGGA	1 cut(s)	468
TspMI	CCCGGG	1 cut(s)	499
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	5 cut(s)	14, 307, 553, 748, 938
XagI	CCTNNNNNAGG	1 cut(s)	838
XapI	RAATTY	3 cut(s)	538, 864, 1117
XbaI	TCTAGA	1 cut(s)	767
XceI	RCATGY	1 cut(s)	1114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmaI	CCCGGG	1 cut(s)	499
XspI	CTAG	2 cut(s)	441, 768
ZraI	GACGTC	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.