RLG00000015914

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007775
Physical Location & Seq
Forward (+)
2405843 .. 2407479
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015914

Sequence Viewer

Length: 1278 bp
ATGCCAAGGCCGGGTCCGAGGCCGTATGAGTGCGTCAGGCGGGCTTGGCATAGCGAAAGGCACCAACCCATGAGAGGCTCCATCATTCAGCAGATGTTCAGGGTCGTCAGTGAAGTTCATAGCTCCAAAACGAAGAACAACAAGGAGTGGCAGGAGAAGCTGCCCATGGTGGTTTTGAGAGCAGAGGAAATCATGTATTCCAAAGCCAATTCAGAGGCTGAGTACATGAATTCTGACACACTATGGGATAGAGCAAATGACGCCATTAACACAATTATTCGAAGAGATGCGGGCACTGAAACCGGAACCGGGGACCTTTTGCCCCCGTGTGTTGAAGCTGCGCTTAATCTGGGTTGTGTTGCGGTAAGAGCTTCAAGAAGCCAACGCCACAGTAATCCAAGGAGTTACCTCATTCCGAGACCACAAGAACCCCCCTCTCCTCCCGCTAGGATTTTGGATAGACCATCTGATGAACGACGCCCTCCGTTTTCTCCTCCACATCACCCGGGAAATCAATCAAACTTTGCAAGACCCTCAGCTGTGAGTTCTGCACATTTGGTCCCAGAAGCTCACAGTCATGCCAACCAAAGTAGTAACCTGACTAACCCTCGGCATTACCCATTTTCCCTTGAGAATCTTCCTGGTGGCCATAACCAGGTAACAACAATGTCAACCAACAACCAATTGAACTTAGGTTCAGTATATCCATTGTATTATGGATCTCACTATCAAACTGAAGCATCCCAGTTAGGTCCTCAGGTCCCAGAAAATGCACATTCTAGGACTATATATGTTGGTACACCAGTTACATCAATTCAGGAACCTACCAAGCAGAACATTTTCACCTGTCAAAGGGCTGAAAATGTGTCACACAGAATTCCCCAAGTAGATGTCATGGACATCCAGGAGAAGCCACGAGAAGCAGAATATGATTTATCTTTGAGGTTGGGTCCTGTCTCACATTTATGTACTGATAGAAGCTTCGCCAGTGAAACGGAAGATATTGGTTCAAGTAATTCTCAAGAGGGTGGAAAGTTCAACGATTATTCACCATCTATAAGTAAGGAGTTCTGTTTCTTTCCTACTAAGACTGCTTATGATCCCTCTGAGTCCACTTCAAGCATGTGGAATTCAGAGGGTGAAGATCGGAGTTTGGAGCCAACTTTAAAGAAGCACAAAGCAACTTTTAGAAACAATGAAGAGGATGGGCAATTTTTCTGCCAGCCACCTGGCCAGCCCAACAAGTTTCCTGGTCGATTTACAGGGCCAGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

47.72

Weight (kDa)

6.61

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 4 cut(s) 40, 290, 362, 444
AclWI GGATC 2 cut(s) 727, 1094
AcoI YGGCCR 2 cut(s) 646, 1231
AcsI RAATTY 3 cut(s) 229, 876, 1129
AcuI CTGAAG 1 cut(s) 756
AcyI GRCGYC 2 cut(s) 261, 478
AfaI GTAC 3 cut(s) 224, 799, 970
AfiI CCNNNNNNNGG 5 cut(s) 11, 74, 309, 655, 852
AgsI TTSAA 6 cut(s) 335, 375, 688, 1011, 1039, 1119
AjnI CCWGG 6 cut(s) 640, 654, 903, 1228, 1249, 1267
AluBI AGCT 7 cut(s) 123, 160, 338, 371, 539, 569, 981
AluI AGCT 7 cut(s) 123, 160, 338, 371, 539, 569, 981
Alw26I GTCTC 2 cut(s) 412, 961
AlwI GGATC 2 cut(s) 727, 1094
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 5 cut(s) 8, 20, 646, 1231, 1265
ApeKI GCWGC 2 cut(s) 160, 338
ApoI RAATTY 3 cut(s) 229, 876, 1129
Asp700I GAANNNNTTC 1 cut(s) 839
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 7 cut(s) 14, 313, 559, 752, 760, 950, 1265
AsuC2I CCSGG 4 cut(s) 12, 310, 506, 507
AsuHPI GGTGA 4 cut(s) 494, 835, 1041, 1151
AsuII TTCGAA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 6 cut(s) 14, 313, 559, 752, 760, 950
AxyI CCTNAGG 1 cut(s) 756
BaeGI GKGCMC 1 cut(s) 296
BaeI ACNNNNGTAYC 2 cut(s) 789, 822
BalI TGGCCA 2 cut(s) 648, 1233
BanI GGYRCC 1 cut(s) 60
BauI CACGAG 1 cut(s) 915
BbvCI CCTCAGC 1 cut(s) 535
BbvI GCAGC 2 cut(s) 147, 325
BccI CCATC 4 cut(s) 89, 472, 1060, 1199
BceAI ACGGC 1 cut(s) 7
BciT130I CCWGG 6 cut(s) 642, 656, 905, 1230, 1251, 1269
BcnI CCSGG 4 cut(s) 12, 310, 506, 507
BcoDI GTCTC 2 cut(s) 412, 961
BfaI CTAG 2 cut(s) 447, 780
BisI GCNGC 2 cut(s) 161, 339
BlsI GCNGC 2 cut(s) 162, 340
Bme18I GGWCC 6 cut(s) 14, 313, 559, 752, 760, 950
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 7 cut(s) 14, 313, 559, 752, 760, 950, 1265
BmrI ACTGGG 1 cut(s) 739
BmsI GCATC 2 cut(s) 277, 749
BmuI ACTGGG 1 cut(s) 739
Bpu10I CCTNAGC 1 cut(s) 535
Bpu14I TTCGAA 1 cut(s) 280
BpuEI CTTGAG 2 cut(s) 650, 1005
BpuMI CCSGG 4 cut(s) 12, 310, 506, 507
BsaHI GRCGYC 2 cut(s) 261, 478
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 7 cut(s) 5, 17, 165, 309, 398, 505, 608
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 74, 309, 655, 852
Bse1I ACTGG 3 cut(s) 745, 803, 987
Bse21I CCTNAGG 1 cut(s) 756
BseBI CCWGG 6 cut(s) 642, 656, 905, 1230, 1251, 1269
BseDI CCNNGG 7 cut(s) 5, 17, 165, 309, 398, 505, 608
BseGI GGATG 3 cut(s) 740, 900, 1210
BseLI CCNNNNNNNGG 5 cut(s) 11, 74, 309, 655, 852
BseMII CTCAG 4 cut(s) 210, 549, 770, 1098
BseNI ACTGG 3 cut(s) 745, 803, 987
BseRI GAGGAG 2 cut(s) 429, 483
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 2 cut(s) 147, 325
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 5 cut(s) 10, 22, 648, 1233, 1267
BshNI GGYRCC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 4 cut(s) 11, 303, 309, 506
BslFI GGGAC 3 cut(s) 326, 545, 746
BslI CCNNNNNNNGG 5 cut(s) 11, 74, 309, 655, 852
BsmAI GTCTC 2 cut(s) 412, 961
BsmFI GGGAC 3 cut(s) 326, 545, 746
BsnI GGCC 5 cut(s) 10, 22, 648, 1233, 1267
Bso31I GGTCTC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 505
Bsp119I TTCGAA 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 3 cut(s) 719, 1099, 1144
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 4 cut(s) 40, 290, 362, 444
BspANI GGCC 5 cut(s) 10, 22, 648, 1233, 1267
BspCNI CTCAG 4 cut(s) 211, 548, 769, 1099
BspPI GGATC 2 cut(s) 727, 1094
BspT104I TTCGAA 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 412
BsrI ACTGG 3 cut(s) 745, 803, 987
BssECI CCNNGG 7 cut(s) 5, 17, 165, 309, 398, 505, 608
BssMI GATC 3 cut(s) 719, 1099, 1144
BssNI GRCGYC 2 cut(s) 261, 478
BssSI CACGAG 1 cut(s) 915
BssT1I CCWWGG 3 cut(s) 5, 165, 398
Bst2BI CACGAG 1 cut(s) 915
Bst2UI CCWGG 6 cut(s) 642, 656, 905, 1230, 1251, 1269
Bst4CI ACNGT 2 cut(s) 392, 575
Bst6I CTCTTC 2 cut(s) 277, 1194
BstACI GRCGYC 2 cut(s) 261, 478
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 4 cut(s) 42, 292, 1223, 1235
BstDEI CTNAG 6 cut(s) 219, 535, 691, 756, 1086, 1107
BstDSI CCRYGG 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 850
BstF5I GGATG 3 cut(s) 740, 900, 1210
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 3 cut(s) 722, 1102, 1147
BstMAI GTCTC 2 cut(s) 412, 961
BstMBI GATC 3 cut(s) 719, 1099, 1144
BstMWI GCNNNNNNNGC 4 cut(s) 46, 157, 260, 368
BstNI CCWGG 6 cut(s) 642, 656, 905, 1230, 1251, 1269
BstNSI RCATGY 1 cut(s) 1126
BstSLI GKGCMC 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 147, 325
BstX2I RGATCY 1 cut(s) 719
BstXI CCANNNNNNTGG 1 cut(s) 1229
BstYI RGATCY 1 cut(s) 719
Bsu36I CCTNAGG 1 cut(s) 756
BsuRI GGCC 5 cut(s) 10, 22, 648, 1233, 1267
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 3 cut(s) 740, 900, 1210
BtsIMutI CAGTG 3 cut(s) 115, 294, 994
Cac8I GCNNGC 4 cut(s) 42, 292, 1223, 1235
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 7 cut(s) 14, 313, 559, 752, 760, 950, 1265
Cfr9I CCCGGG 1 cut(s) 505
CseI GACGC 3 cut(s) 22, 269, 486
CsiI ACCWGGT 1 cut(s) 654
Csp6I GTAC 3 cut(s) 223, 798, 969
CviAII CATG 7 cut(s) 70, 166, 193, 226, 578, 895, 1123
CviQI GTAC 3 cut(s) 223, 798, 969
DdeI CTNAG 6 cut(s) 219, 535, 691, 756, 1086, 1107
DpnI GATC 3 cut(s) 721, 1101, 1146
DpnII GATC 3 cut(s) 719, 1099, 1144
DraI TTTAAA 1 cut(s) 1167
EaeI YGGCCR 2 cut(s) 646, 1231
Eam1104I CTCTTC 2 cut(s) 277, 1194
EarI CTCTTC 2 cut(s) 277, 1194
Eco130I CCWWGG 3 cut(s) 5, 165, 398
Eco31I GGTCTC 1 cut(s) 412
Eco47I GGWCC 6 cut(s) 14, 313, 559, 752, 760, 950
Eco57I CTGAAG 1 cut(s) 756
Eco81I CCTNAGG 1 cut(s) 756
Eco88I CYCGRG 1 cut(s) 505
EcoNI CCTNNNNNAGG 1 cut(s) 850
EcoO109I RGGNCCY 4 cut(s) 313, 752, 760, 950
EcoRI GAATTC 3 cut(s) 229, 876, 1129
EcoRII CCWGG 6 cut(s) 640, 654, 903, 1228, 1249, 1267
EcoT14I CCWWGG 3 cut(s) 5, 165, 398
ErhI CCWWGG 3 cut(s) 5, 165, 398
FaeI CATG 7 cut(s) 73, 169, 196, 229, 581, 898, 1126
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 3 cut(s) 326, 545, 746
FatI CATG 7 cut(s) 69, 165, 192, 225, 577, 894, 1122
FauI CCCGC 3 cut(s) 33, 283, 451
Fnu4HI GCNGC 2 cut(s) 161, 339
FokI GGATG 3 cut(s) 727, 887, 1217
Fsp4HI GCNGC 2 cut(s) 161, 339
FspBI CTAG 2 cut(s) 447, 780
GlaI GCGC 1 cut(s) 342
GluI GCNGC 2 cut(s) 161, 339
HaeIII GGCC 5 cut(s) 10, 22, 648, 1233, 1267
HapII CCGG 4 cut(s) 11, 303, 309, 506
HgaI GACGC 3 cut(s) 22, 269, 486
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 2 cut(s) 261, 478
Hin1II CATG 7 cut(s) 73, 169, 196, 229, 581, 898, 1126
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HincII GTYRAC 1 cut(s) 672
HindII GTYRAC 1 cut(s) 672
HindIII AAGCTT 1 cut(s) 979
HinfI GANTC 2 cut(s) 634, 1109
HpaII CCGG 4 cut(s) 11, 303, 309, 506
HphI GGTGA 4 cut(s) 494, 835, 1041, 1151
Hpy166II GTNNAC 3 cut(s) 672, 800, 1113
Hpy188I TCNGA 8 cut(s) 18, 214, 235, 417, 469, 1108, 1135, 1149
Hpy188III TCNNGA 3 cut(s) 375, 818, 1022
Hpy8I GTNNAC 3 cut(s) 672, 800, 1113
Hpy99I CGWCG 1 cut(s) 480
HpyCH4III ACNGT 2 cut(s) 392, 575
HpyCH4V TGCA 3 cut(s) 527, 551, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 157, 260, 368
HpyF3I CTNAG 6 cut(s) 219, 535, 691, 756, 1086, 1107
Hsp92I GRCGYC 2 cut(s) 261, 478
Hsp92II CATG 7 cut(s) 73, 169, 196, 229, 581, 898, 1126
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 3 cut(s) 719, 1099, 1144
LmnI GCTCC 3 cut(s) 83, 128, 1156
Lsp1109I GCAGC 2 cut(s) 147, 325
LweI GCATC 2 cut(s) 277, 749
MabI ACCWGGT 1 cut(s) 654
MaeI CTAG 2 cut(s) 447, 780
MaeIII GTNAC 5 cut(s) 404, 593, 658, 805, 867
MalI GATC 3 cut(s) 721, 1101, 1146
MboI GATC 3 cut(s) 719, 1099, 1144
MboII GAAGA 6 cut(s) 145, 294, 629, 1010, 1154, 1211
MfeI CAATTG 1 cut(s) 683
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 1 cut(s) 296
MlsI TGGCCA 2 cut(s) 648, 1233
MluCI AATT 9 cut(s) 208, 229, 273, 683, 813, 876, 1015, 1129, 1211
MluNI TGGCCA 2 cut(s) 648, 1233
MlyI GAGTC 1 cut(s) 1118
Mox20I TGGCCA 2 cut(s) 648, 1233
MroXI GAANNNNTTC 1 cut(s) 839
MscI TGGCCA 2 cut(s) 648, 1233
MseI TTAA 3 cut(s) 267, 345, 1166
MslI CAYNNNNRTG 2 cut(s) 576, 964
Msp20I TGGCCA 2 cut(s) 648, 1233
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 4 cut(s) 11, 303, 309, 506
MunI CAATTG 1 cut(s) 683
MvaI CCWGG 6 cut(s) 642, 656, 905, 1230, 1251, 1269
MwoI GCNNNNNNNGC 4 cut(s) 46, 157, 260, 368
NciI CCSGG 4 cut(s) 12, 310, 506, 507
NcoI CCATGG 1 cut(s) 165
NdeII GATC 3 cut(s) 719, 1099, 1144
NlaIII CATG 7 cut(s) 73, 169, 196, 229, 581, 898, 1126
NmeAIII GCCGAG 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 867
NspI RCATGY 1 cut(s) 1126
NspV TTCGAA 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 839
PfeI GAWTC 1 cut(s) 634
PfoI TCCNGGA 1 cut(s) 903
PkrI GCNGC 2 cut(s) 162, 340
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
PpuMI RGGWCCY 4 cut(s) 313, 752, 760, 950
Psp5II RGGWCCY 4 cut(s) 313, 752, 760, 950
Psp6I CCWGG 6 cut(s) 640, 654, 903, 1228, 1249, 1267
PspGI CCWGG 6 cut(s) 640, 654, 903, 1228, 1249, 1267
PspPI GGNCC 7 cut(s) 14, 313, 559, 752, 760, 950, 1265
PspPPI RGGWCCY 4 cut(s) 313, 752, 760, 950
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 3 cut(s) 224, 799, 970
RsaNI GTAC 3 cut(s) 223, 798, 969
RseI CAYNNNNRTG 2 cut(s) 576, 964
SaqAI TTAA 3 cut(s) 267, 345, 1166
SatI GCNGC 2 cut(s) 161, 339
Sau3AI GATC 3 cut(s) 719, 1099, 1144
Sau96I GGNCC 7 cut(s) 14, 313, 559, 752, 760, 950, 1265
SchI GAGTC 1 cut(s) 1118
SduI GDGCHC 1 cut(s) 296
SexAI ACCWGGT 1 cut(s) 654
SfaNI GCATC 2 cut(s) 277, 749
SfuI TTCGAA 1 cut(s) 280
SinI GGWCC 6 cut(s) 14, 313, 559, 752, 760, 950
SmaI CCCGGG 1 cut(s) 507
SmiMI CAYNNNNRTG 2 cut(s) 576, 964
SmlI CTYRAG 2 cut(s) 629, 1020
SmoI CTYRAG 2 cut(s) 629, 1020
Sse9I AATT 9 cut(s) 208, 229, 273, 683, 813, 876, 1015, 1129, 1211
SsiI CCGC 4 cut(s) 40, 290, 362, 444
SspMI CTAG 2 cut(s) 447, 780
StyI CCWWGG 3 cut(s) 5, 165, 398
TaaI ACNGT 2 cut(s) 392, 575
TaqI TCGA 2 cut(s) 280, 1255
TasI AATT 9 cut(s) 208, 229, 273, 683, 813, 876, 1015, 1129, 1211
TatI WGTACW 2 cut(s) 222, 968
TfiI GAWTC 1 cut(s) 634
Tru1I TTAA 3 cut(s) 267, 345, 1166
Tru9I TTAA 3 cut(s) 267, 345, 1166
TscAI CASTG 3 cut(s) 115, 301, 994
TseFI GTSAC 1 cut(s) 867
TseI GCWGC 2 cut(s) 160, 338
Tsp45I GTSAC 1 cut(s) 867
TspDTI ATGAA 4 cut(s) 107, 242, 486, 1212
TspGWI ACGGA 2 cut(s) 474, 1010
TspMI CCCGGG 1 cut(s) 505
TspRI CASTG 3 cut(s) 115, 301, 994
VpaK11BI GGWCC 6 cut(s) 14, 313, 559, 752, 760, 950
XagI CCTNNNNNAGG 1 cut(s) 850
XapI RAATTY 3 cut(s) 229, 876, 1129
XceI RCATGY 1 cut(s) 1126
XmaI CCCGGG 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 839
XspI CTAG 2 cut(s) 447, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.