Rw1G034100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007775
Physical Location & Seq
Reverse (-)
62045307 .. 62047703
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034100.1

Sequence Viewer

Length: 1062 bp
ATGGAGGAAAGGGGTCTGAGGCCGTATGAGTGCGTCAGGCGGGCTTGGCATAGCGATAGGCACCAACCCATGAGAGGCTCCATCATTCAGCAGATGTTCAAGAACAACAAGGAGTGGCAGGAAAAGCTGGCCATGGTGGTTTTGAGAGCAGAGGAAATCATGTATTCCAAAGACAATTCAGAGGCTGAAGCAAATGACGCCATTAACACAATTATTCCAAGATATGAGGGCACTGAAACCGGGGACCTTTTGCCGCCGTCTTCAAGAAGCCAATGCCACAGTAATCCAAGGAGTTACCACATTTCGAGACCACAAGAACCCCCTTCTCCACCCACTAGAATTTTAGATAGACCATCTGATGAACGACGCCCTCCGTTTTCTCCTCCACATCACCCGGGAAATCAATCAAACTTTGCAAGACCCTCAGCTGTGAGTTCTGCACATTTGGTCCCAGAAGCTCACAGTCATGCCAACCAAGGTAGTAACCTGACTAACCCTCGGCATTACCCATTTTCACTTGAGAATGTTCCTGGTGGCCATAACCAGGTAACAACAATGTCAACCAACAACCAATTGAACTTAGGTTCAGTATATCCATTGTGTTATGGATCTCACTATCAAACTGAAGCATCCCAGTTAGGTCCTCAGGTCCCAGAAAATGCACATTCTGGGACTATATATGTTGGTACACCAGTTACATCAATTCAGGAGCCTACCAAGCATAATATTTTCACCTTAGATGTTATGGACATCCAGGAGAAGCCACGAGAAGCAGAATATGTGGAAGTAAAGCCACTTGTGCATCTTACTTCATGCTTAAAGGAAGATATTAGCTCGAGTAATTCTCAAGAGGGCGGAAAGTTCAACGATTATTCACCATCTATAAGTAAGGAGTTCTGTTTCTTTCCTACTAAGACTGCTTATGATCCCTCTGATTTGGAGCCAACTTTAAAGAAGCGCAAAGCAACTTTTAGAAACAATGAAGAGGATGGGCAATTTTTCTGCCAGCCACCTGGCCAGCCCAACAGGTTTCCTGGTCGATTTACAGGGCCAGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

39.78

Weight (kDa)

6.32

Isoelectric Point (pI)

61.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 3 cut(s) 40, 254, 855
AclWI GGATC 2 cut(s) 616, 920
AcoI YGGCCR 3 cut(s) 129, 535, 1015
AcsI RAATTY 1 cut(s) 339
AcuI CTGAAG 2 cut(s) 207, 645
AcyI GRCGYC 2 cut(s) 198, 367
AfaI GTAC 1 cut(s) 688
AfiI CCNNNNNNNGG 2 cut(s) 74, 544
AgsI TTSAA 4 cut(s) 100, 264, 577, 865
AjnI CCWGG 6 cut(s) 529, 543, 753, 1012, 1033, 1051
AluBI AGCT 4 cut(s) 127, 428, 458, 834
AluI AGCT 4 cut(s) 127, 428, 458, 834
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 2 cut(s) 616, 920
AlwNI CAGNNNCTG 1 cut(s) 185
Ama87I CYCGRG 2 cut(s) 394, 835
AoxI GGCC 5 cut(s) 20, 129, 535, 1015, 1049
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 1 cut(s) 960
AspS9I GGNCC 5 cut(s) 244, 448, 641, 649, 1049
AsuC2I CCSGG 3 cut(s) 241, 395, 396
AsuHPI GGTGA 3 cut(s) 383, 724, 867
AvaI CYCGRG 2 cut(s) 394, 835
AvaII GGWCC 4 cut(s) 244, 448, 641, 649
AxyI CCTNAGG 1 cut(s) 645
BaeGI GKGCMC 1 cut(s) 233
BaeI ACNNNNGTAYC 2 cut(s) 678, 711
BalI TGGCCA 3 cut(s) 131, 537, 1017
BanI GGYRCC 1 cut(s) 60
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 424
BccI CCATC 4 cut(s) 89, 361, 886, 983
BceAI ACGGC 2 cut(s) 7, 241
BciT130I CCWGG 6 cut(s) 531, 545, 755, 1014, 1035, 1053
BcnI CCSGG 3 cut(s) 241, 395, 396
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme1390I CCNGG 9 cut(s) 241, 395, 396, 531, 545, 755, 1014, 1035, 1053
Bme18I GGWCC 4 cut(s) 244, 448, 641, 649
BmeT110I CYCGRG 2 cut(s) 394, 835
BmgT120I GGNCC 5 cut(s) 244, 448, 641, 649, 1049
BmiI GGNNCC 7 cut(s) 62, 79, 245, 450, 651, 711, 942
BmrFI CCNGG 9 cut(s) 241, 395, 396, 531, 545, 755, 1014, 1035, 1053
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 2 cut(s) 638, 811
BmuI ACTGGG 1 cut(s) 628
BpiI GAAGAC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 829, 861
Bpu10I CCTNAGC 1 cut(s) 424
BpuEI CTTGAG 2 cut(s) 539, 831
BpuMI CCSGG 3 cut(s) 241, 395, 396
BsaHI GRCGYC 2 cut(s) 198, 367
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 6 cut(s) 132, 240, 287, 394, 475, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 544
Bse1I ACTGG 2 cut(s) 634, 692
Bse21I CCTNAGG 1 cut(s) 645
BseBI CCWGG 6 cut(s) 531, 545, 755, 1014, 1035, 1053
BseDI CCNNGG 6 cut(s) 132, 240, 287, 394, 475, 497
BseGI GGATG 3 cut(s) 629, 750, 994
BseLI CCNNNNNNNGG 2 cut(s) 74, 544
BseMII CTCAG 3 cut(s) 8, 438, 659
BseNI ACTGG 2 cut(s) 634, 692
BseRI GAGGAG 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 423
BshFI GGCC 5 cut(s) 22, 131, 537, 1017, 1051
BshNI GGYRCC 1 cut(s) 60
BsiHKCI CYCGRG 2 cut(s) 394, 835
BsiSI CCGG 2 cut(s) 240, 395
BslFI GGGAC 4 cut(s) 257, 434, 635, 685
BslI CCNNNNNNNGG 2 cut(s) 74, 544
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 4 cut(s) 257, 434, 635, 685
BsnI GGCC 5 cut(s) 22, 131, 537, 1017, 1051
Bso31I GGTCTC 1 cut(s) 301
BsoBI CYCGRG 2 cut(s) 394, 835
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 608, 925
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 3 cut(s) 40, 254, 855
BspANI GGCC 5 cut(s) 22, 131, 537, 1017, 1051
BspCNI CTCAG 3 cut(s) 9, 437, 658
BspLI GGNNCC 7 cut(s) 62, 79, 245, 450, 651, 711, 942
BspPI GGATC 2 cut(s) 616, 920
BspT107I GGYRCC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 301
BsrI ACTGG 2 cut(s) 634, 692
BssECI CCNNGG 6 cut(s) 132, 240, 287, 394, 475, 497
BssMI GATC 2 cut(s) 608, 925
BssNI GRCGYC 2 cut(s) 198, 367
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 3 cut(s) 132, 287, 475
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 6 cut(s) 531, 545, 755, 1014, 1035, 1053
Bst4CI ACNGT 2 cut(s) 281, 464
Bst6I CTCTTC 1 cut(s) 978
BstACI GRCGYC 2 cut(s) 198, 367
BstC8I GCNNGC 4 cut(s) 42, 129, 1007, 1019
BstDEI CTNAG 6 cut(s) 17, 424, 580, 645, 736, 912
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 3 cut(s) 629, 750, 994
BstHHI GCGC 1 cut(s) 960
BstKTI GATC 2 cut(s) 611, 928
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 2 cut(s) 608, 925
BstMWI GCNNNNNNNGC 5 cut(s) 46, 124, 197, 718, 799
BstNI CCWGG 6 cut(s) 531, 545, 755, 1014, 1035, 1053
BstSCI CCNGG 9 cut(s) 239, 393, 394, 529, 543, 753, 1012, 1033, 1051
BstSLI GKGCMC 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 608
BstXI CCANNNNNNTGG 1 cut(s) 1013
BstYI RGATCY 1 cut(s) 608
Bsu36I CCTNAGG 1 cut(s) 645
BsuRI GGCC 5 cut(s) 22, 131, 537, 1017, 1051
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 3 cut(s) 629, 750, 994
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 4 cut(s) 42, 129, 1007, 1019
CaiI CAGNNNCTG 1 cut(s) 185
CfoI GCGC 1 cut(s) 960
Cfr13I GGNCC 5 cut(s) 244, 448, 641, 649, 1049
Cfr9I CCCGGG 1 cut(s) 394
CseI GACGC 3 cut(s) 22, 206, 375
CsiI ACCWGGT 1 cut(s) 543
Csp6I GTAC 1 cut(s) 687
CviAII CATG 5 cut(s) 70, 133, 160, 467, 813
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 6 cut(s) 17, 424, 580, 645, 736, 912
DpnI GATC 2 cut(s) 610, 927
DpnII GATC 2 cut(s) 608, 925
DraI TTTAAA 1 cut(s) 951
EaeI YGGCCR 3 cut(s) 129, 535, 1015
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
EciI GGCGGA 1 cut(s) 870
Eco130I CCWWGG 3 cut(s) 132, 287, 475
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 4 cut(s) 244, 448, 641, 649
Eco57I CTGAAG 2 cut(s) 207, 645
Eco81I CCTNAGG 1 cut(s) 645
Eco88I CYCGRG 2 cut(s) 394, 835
EcoO109I RGGNCCY 3 cut(s) 244, 641, 649
EcoRII CCWGG 6 cut(s) 529, 543, 753, 1012, 1033, 1051
EcoT14I CCWWGG 3 cut(s) 132, 287, 475
ErhI CCWWGG 3 cut(s) 132, 287, 475
FaeI CATG 5 cut(s) 73, 136, 163, 470, 816
FaqI GGGAC 4 cut(s) 257, 434, 635, 685
FatI CATG 5 cut(s) 69, 132, 159, 466, 812
FauI CCCGC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 3 cut(s) 616, 737, 1001
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 959
GluI GCNGC 1 cut(s) 254
HaeIII GGCC 5 cut(s) 22, 131, 537, 1017, 1051
HapII CCGG 2 cut(s) 240, 395
HgaI GACGC 3 cut(s) 22, 206, 375
HhaI GCGC 1 cut(s) 960
Hin1I GRCGYC 2 cut(s) 198, 367
Hin1II CATG 5 cut(s) 73, 136, 163, 470, 816
Hin6I GCGC 1 cut(s) 958
HinP1I GCGC 1 cut(s) 958
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HpaII CCGG 2 cut(s) 240, 395
HphI GGTGA 3 cut(s) 383, 724, 867
Hpy166II GTNNAC 2 cut(s) 561, 689
Hpy188I TCNGA 4 cut(s) 18, 181, 358, 934
Hpy188III TCNNGA 5 cut(s) 100, 264, 306, 707, 848
Hpy8I GTNNAC 2 cut(s) 561, 689
Hpy99I CGWCG 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 2 cut(s) 281, 464
HpyCH4V TGCA 4 cut(s) 416, 440, 662, 802
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 124, 197, 718, 799
HpyF3I CTNAG 6 cut(s) 17, 424, 580, 645, 736, 912
Hsp92I GRCGYC 2 cut(s) 198, 367
Hsp92II CATG 5 cut(s) 73, 136, 163, 470, 816
HspAI GCGC 1 cut(s) 958
Kzo9I GATC 2 cut(s) 608, 925
LmnI GCTCC 3 cut(s) 83, 709, 940
LweI GCATC 2 cut(s) 638, 811
MabI ACCWGGT 1 cut(s) 543
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 4 cut(s) 293, 482, 547, 694
MalI GATC 2 cut(s) 610, 927
MboI GATC 2 cut(s) 608, 925
MboII GAAGA 3 cut(s) 252, 836, 995
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 233
MlsI TGGCCA 3 cut(s) 131, 537, 1017
MluCI AATT 7 cut(s) 175, 210, 339, 572, 702, 841, 995
MluNI TGGCCA 3 cut(s) 131, 537, 1017
Mox20I TGGCCA 3 cut(s) 131, 537, 1017
MscI TGGCCA 3 cut(s) 131, 537, 1017
MseI TTAA 3 cut(s) 204, 818, 950
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 3 cut(s) 131, 537, 1017
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 2 cut(s) 240, 395
MspR9I CCNGG 9 cut(s) 241, 395, 396, 531, 545, 755, 1014, 1035, 1053
MunI CAATTG 1 cut(s) 572
MvaI CCWGG 6 cut(s) 531, 545, 755, 1014, 1035, 1053
MwoI GCNNNNNNNGC 5 cut(s) 46, 124, 197, 718, 799
NciI CCSGG 3 cut(s) 241, 395, 396
NcoI CCATGG 1 cut(s) 132
NdeII GATC 2 cut(s) 608, 925
NlaIII CATG 5 cut(s) 73, 136, 163, 470, 816
NlaIV GGNNCC 7 cut(s) 62, 79, 245, 450, 651, 711, 942
NmeAIII GCCGAG 1 cut(s) 478
PaeR7I CTCGAG 1 cut(s) 835
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 1 cut(s) 255
PpuMI RGGWCCY 3 cut(s) 244, 641, 649
Psp5II RGGWCCY 3 cut(s) 244, 641, 649
Psp6I CCWGG 6 cut(s) 529, 543, 753, 1012, 1033, 1051
PspGI CCWGG 6 cut(s) 529, 543, 753, 1012, 1033, 1051
PspN4I GGNNCC 7 cut(s) 62, 79, 245, 450, 651, 711, 942
PspPI GGNCC 5 cut(s) 244, 448, 641, 649, 1049
PspPPI RGGWCCY 3 cut(s) 244, 641, 649
PspXI VCTCGAGB 1 cut(s) 835
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 3 cut(s) 204, 818, 950
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 2 cut(s) 608, 925
Sau96I GGNCC 5 cut(s) 244, 448, 641, 649, 1049
ScrFI CCNGG 9 cut(s) 241, 395, 396, 531, 545, 755, 1014, 1035, 1053
SduI GDGCHC 1 cut(s) 233
SexAI ACCWGGT 1 cut(s) 543
SfaNI GCATC 2 cut(s) 638, 811
Sfr274I CTCGAG 1 cut(s) 835
SinI GGWCC 4 cut(s) 244, 448, 641, 649
SlaI CTCGAG 1 cut(s) 835
SmaI CCCGGG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 3 cut(s) 518, 835, 846
SmoI CTYRAG 3 cut(s) 518, 835, 846
Sse9I AATT 7 cut(s) 175, 210, 339, 572, 702, 841, 995
SsiI CCGC 3 cut(s) 40, 254, 855
SspI AATATT 1 cut(s) 727
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 9 cut(s) 239, 393, 394, 529, 543, 753, 1012, 1033, 1051
StyI CCWWGG 3 cut(s) 132, 287, 475
TaaI ACNGT 2 cut(s) 281, 464
TaqI TCGA 3 cut(s) 305, 836, 1039
TasI AATT 7 cut(s) 175, 210, 339, 572, 702, 841, 995
TauI GCSGC 1 cut(s) 256
Tru1I TTAA 3 cut(s) 204, 818, 950
Tru9I TTAA 3 cut(s) 204, 818, 950
TscAI CASTG 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 375, 801, 996
TspGWI ACGGA 1 cut(s) 363
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 4 cut(s) 244, 448, 641, 649
XapI RAATTY 1 cut(s) 339
XhoI CTCGAG 1 cut(s) 835
XmaI CCCGGG 1 cut(s) 394
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.