Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007775

Physical Location & Seq

Genomic Coordinates Forward (+)

2250918 .. 2254115

Gene Structure 3198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG034500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCCAGCTGCGCTTAATCTGGGTTGTGTTGCGGTAAGAGCTTCAAGAAGCCAACGCCACAGTAATCCAAGGAGTTACCTCATTCCGAGACCACAAGAACCCCCCTCTCCACCCACTAGGATTTTGGATAGACCATCTGATGAACGACGCCCTCCGTTTTCTCCTCCACATCACCCGGGAAATCAATCAAACTTTGCAAGACCCTCAGCTGTGAGTTCTGCACATTTGGTCCCAGAAGCTCACAGCCACGCCAACCAAAGTAGTAACCTGACTAACCCTCGGCATTACCCATTTTCCCTTGAGAATGTTCCTGGTGGCCAAAACCAGGTAACAACAATGTCAACCAACAACCAATTGAACTTAGGTTCAGTATATCCATTGTATTATGGATCTCACTATCAAACTGAAGCATCCCAGTTAGGTCCTCAGGTCCCAGAAAATGCACATTCTAGGACTATATATGTTGGTACACCAGTTACATCAATTCAGGAGCCTACCAAGCAGAACATGTTCACCTGTCAAAGGGCTGAAAATGTGTCACACAGAATTCCCCAAGTAGATGTCATGGACATCCAGGAGAAGCCACGAGAAGCAGAATATGATTTATCTTTGAGGTTGGGTCCTGTCTCACATTTATGTACTGATAGAAGCTTGGCCAGTGAAACGGAAGATATTGGTTCGAGTAATTCTCAAGAGGGCGGAAAGTTCAACGATTATTCACCATCTATAAGTAAGGAGTTCTGTTTCTTTCCTACTAGGACTGCTTATGATCCCTCTGAGTCCACTTCAAGCATGTGGAATTCAGAGGGTGAAGATCGGAGTTTGGAGCCAACTTTAAAGAAGCACAAAGCAACTTTTAGAAACAATGAAGAGGATGGGCAATTTTTCTGCCAGCCACCTGGCCAGCCCAACAAGTTTCCTGGTCGATTTTCAGGGCCAGGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.0

Weight (kDa)

6.46

Isoelectric Point (pI)

65.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24150 AT3G24150
fragaria_vesca	FvH4_1g02850
malus_domestica	MD02G1028200.v1.1 MD15G1169900.v1.1
prunus_persica	Prupe.7G246600_v2.0.a1 Prupe.7G246600_v2.0.a1
pyrus_communis	pycom02g02320 pycom15g15150
rosa_chinensis	RchiOBHm_Chr1g0374351 RchiOBHm_Chr2g0087961
rosa_laevigata	RLG00000015914
rosa_multiflora	Rmu_sc0003275.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153100
rosa_rugosa	Rorug01G0480000 Rorug01G0480100 Rorug01G0480100 Rorug01G0480100
rosa_samantha	Rh2AG034700 Rh2BG033700 Rh2CG034700 Rh2DG034500
rosa_wichuraiana	Rw1G034100 Rw2G002710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 699
AclWI	GGATC	2 cut(s)	397, 764
AcoI	YGGCCR	3 cut(s)	316, 654, 901
AcsI	RAATTY	2 cut(s)	546, 799
AcuI	CTGAAG	1 cut(s)	426
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	2 cut(s)	469, 640
AfiI	CCNNNNNNNGG	2 cut(s)	325, 522
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	4 cut(s)	45, 358, 709, 789
AjnI	CCWGG	6 cut(s)	310, 324, 573, 898, 919, 937
AluBI	AGCT	5 cut(s)	8, 41, 209, 239, 651
AluI	AGCT	5 cut(s)	8, 41, 209, 239, 651
Alw26I	GTCTC	2 cut(s)	82, 631
AlwI	GGATC	2 cut(s)	397, 764
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	4 cut(s)	316, 654, 901, 935
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	546, 799
Asp700I	GAANNNNTTC	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	5 cut(s)	229, 422, 430, 620, 935
AsuC2I	CCSGG	2 cut(s)	176, 177
AsuHPI	GGTGA	4 cut(s)	164, 505, 711, 821
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	4 cut(s)	229, 422, 430, 620
AxyI	CCTNAGG	1 cut(s)	426
BaeI	ACNNNNGTAYC	2 cut(s)	459, 492
BalI	TGGCCA	3 cut(s)	318, 656, 903
BauI	CACGAG	1 cut(s)	585
BbvCI	CCTCAGC	1 cut(s)	205
BccI	CCATC	3 cut(s)	142, 730, 869
BciT130I	CCWGG	6 cut(s)	312, 326, 575, 900, 921, 939
BcnI	CCSGG	2 cut(s)	176, 177
BcoDI	GTCTC	2 cut(s)	82, 631
BfaI	CTAG	3 cut(s)	117, 450, 756
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	8 cut(s)	176, 177, 312, 326, 575, 900, 921, 939
Bme18I	GGWCC	4 cut(s)	229, 422, 430, 620
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	5 cut(s)	229, 422, 430, 620, 935
BmiI	GGNNCC	5 cut(s)	231, 432, 492, 621, 828
BmrFI	CCNGG	8 cut(s)	176, 177, 312, 326, 575, 900, 921, 939
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	409
BplI	GAGNNNNNCTC	2 cut(s)	673, 705
Bpu10I	CCTNAGC	1 cut(s)	205
BpuEI	CTTGAG	2 cut(s)	320, 675
BpuMI	CCSGG	2 cut(s)	176, 177
BsaHI	GRCGYC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	68, 175, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 522
Bse1I	ACTGG	3 cut(s)	415, 473, 657
Bse21I	CCTNAGG	1 cut(s)	426
BseBI	CCWGG	6 cut(s)	312, 326, 575, 900, 921, 939
BseDI	CCNNGG	3 cut(s)	68, 175, 278
BseGI	GGATG	3 cut(s)	410, 570, 880
BseLI	CCNNNNNNNGG	2 cut(s)	325, 522
BseMII	CTCAG	3 cut(s)	219, 440, 768
BseNI	ACTGG	3 cut(s)	415, 473, 657
BseRI	GAGGAG	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	4 cut(s)	318, 656, 903, 937
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	215, 416
BslI	CCNNNNNNNGG	2 cut(s)	325, 522
BsmAI	GTCTC	2 cut(s)	82, 631
BsmFI	GGGAC	2 cut(s)	215, 416
BsnI	GGCC	4 cut(s)	318, 656, 903, 937
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	389, 769, 814
BspACI	CCGC	2 cut(s)	32, 699
BspANI	GGCC	4 cut(s)	318, 656, 903, 937
BspCNI	CTCAG	3 cut(s)	218, 439, 769
BspLI	GGNNCC	5 cut(s)	231, 432, 492, 621, 828
BspPI	GGATC	2 cut(s)	397, 764
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	3 cut(s)	415, 473, 657
BssECI	CCNNGG	3 cut(s)	68, 175, 278
BssMI	GATC	3 cut(s)	389, 769, 814
BssNI	GRCGYC	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	6 cut(s)	312, 326, 575, 900, 921, 939
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	6, 893, 905
BstDEI	CTNAG	4 cut(s)	205, 361, 426, 777
BstENI	CCTNNNNNAGG	1 cut(s)	520
BstF5I	GGATG	3 cut(s)	410, 570, 880
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	392, 772, 817
BstMAI	GTCTC	2 cut(s)	82, 631
BstMBI	GATC	3 cut(s)	389, 769, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 38, 499
BstNI	CCWGG	6 cut(s)	312, 326, 575, 900, 921, 939
BstNSI	RCATGY	2 cut(s)	511, 796
BstSCI	CCNGG	8 cut(s)	174, 175, 310, 324, 573, 898, 919, 937
BstX2I	RGATCY	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	899
BstYI	RGATCY	1 cut(s)	389
Bsu36I	CCTNAGG	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	318, 656, 903, 937
BtsCI	GGATG	3 cut(s)	410, 570, 880
BtsIMutI	CAGTG	1 cut(s)	664
Cac8I	GCNNGC	3 cut(s)	6, 893, 905
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	5 cut(s)	229, 422, 430, 620, 935
Cfr9I	CCCGGG	1 cut(s)	175
CseI	GACGC	1 cut(s)	156
CsiI	ACCWGGT	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	468, 639
CviAII	CATG	3 cut(s)	508, 565, 793
CviQI	GTAC	2 cut(s)	468, 639
DdeI	CTNAG	4 cut(s)	205, 361, 426, 777
DpnI	GATC	3 cut(s)	391, 771, 816
DpnII	GATC	3 cut(s)	389, 769, 814
DraI	TTTAAA	1 cut(s)	837
EaeI	YGGCCR	3 cut(s)	316, 654, 901
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
EciI	GGCGGA	1 cut(s)	714
Eco130I	CCWWGG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	4 cut(s)	229, 422, 430, 620
Eco57I	CTGAAG	1 cut(s)	426
Eco81I	CCTNAGG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	520
EcoO109I	RGGNCCY	3 cut(s)	422, 430, 620
EcoRI	GAATTC	2 cut(s)	546, 799
EcoRII	CCWGG	6 cut(s)	310, 324, 573, 898, 919, 937
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	511, 568, 796
FaqI	GGGAC	2 cut(s)	215, 416
FatI	CATG	3 cut(s)	507, 564, 792
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	397, 557, 887
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	3 cut(s)	117, 450, 756
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	4 cut(s)	318, 656, 903, 937
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	511, 568, 796
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	649
HinfI	GANTC	1 cut(s)	779
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	4 cut(s)	164, 505, 711, 821
Hpy166II	GTNNAC	4 cut(s)	342, 470, 513, 783
Hpy188I	TCNGA	5 cut(s)	87, 139, 778, 805, 819
Hpy188III	TCNNGA	3 cut(s)	45, 488, 692
Hpy8I	GTNNAC	4 cut(s)	342, 470, 513, 783
Hpy99I	CGWCG	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	197, 221, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 38, 499
HpyF3I	CTNAG	4 cut(s)	205, 361, 426, 777
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	511, 568, 796
HspAI	GCGC	1 cut(s)	11
Kzo9I	GATC	3 cut(s)	389, 769, 814
LmnI	GCTCC	2 cut(s)	490, 826
LweI	GCATC	1 cut(s)	419
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	3 cut(s)	117, 450, 756
MaeIII	GTNAC	5 cut(s)	74, 263, 328, 475, 537
MalI	GATC	3 cut(s)	391, 771, 816
MboI	GATC	3 cut(s)	389, 769, 814
MboII	GAAGA	3 cut(s)	680, 824, 881
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	1 cut(s)	389
MlsI	TGGCCA	3 cut(s)	318, 656, 903
MluCI	AATT	6 cut(s)	353, 483, 546, 685, 799, 881
MluNI	TGGCCA	3 cut(s)	318, 656, 903
MlyI	GAGTC	1 cut(s)	788
Mox20I	TGGCCA	3 cut(s)	318, 656, 903
MroXI	GAANNNNTTC	1 cut(s)	509
MscI	TGGCCA	3 cut(s)	318, 656, 903
MseI	TTAA	2 cut(s)	15, 836
MslI	CAYNNNNRTG	1 cut(s)	634
Msp20I	TGGCCA	3 cut(s)	318, 656, 903
MspA1I	CMGCKG	2 cut(s)	8, 209
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	8 cut(s)	176, 177, 312, 326, 575, 900, 921, 939
MunI	CAATTG	1 cut(s)	353
MvaI	CCWGG	6 cut(s)	312, 326, 575, 900, 921, 939
MwoI	GCNNNNNNNGC	3 cut(s)	10, 38, 499
NciI	CCSGG	2 cut(s)	176, 177
NdeII	GATC	3 cut(s)	389, 769, 814
NlaIII	CATG	3 cut(s)	511, 568, 796
NlaIV	GGNNCC	5 cut(s)	231, 432, 492, 621, 828
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	537
NspI	RCATGY	2 cut(s)	511, 796
PciI	ACATGT	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	509
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PpuMI	RGGWCCY	3 cut(s)	422, 430, 620
PscI	ACATGT	1 cut(s)	507
Psp5II	RGGWCCY	3 cut(s)	422, 430, 620
Psp6I	CCWGG	6 cut(s)	310, 324, 573, 898, 919, 937
PspGI	CCWGG	6 cut(s)	310, 324, 573, 898, 919, 937
PspN4I	GGNNCC	5 cut(s)	231, 432, 492, 621, 828
PspPI	GGNCC	5 cut(s)	229, 422, 430, 620, 935
PspPPI	RGGWCCY	3 cut(s)	422, 430, 620
PsuI	RGATCY	1 cut(s)	389
PvuII	CAGCTG	2 cut(s)	8, 209
RsaI	GTAC	2 cut(s)	469, 640
RsaNI	GTAC	2 cut(s)	468, 639
RseI	CAYNNNNRTG	1 cut(s)	634
SaqAI	TTAA	2 cut(s)	15, 836
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	3 cut(s)	389, 769, 814
Sau96I	GGNCC	5 cut(s)	229, 422, 430, 620, 935
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	8 cut(s)	176, 177, 312, 326, 575, 900, 921, 939
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	419
SinI	GGWCC	4 cut(s)	229, 422, 430, 620
SmaI	CCCGGG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	2 cut(s)	299, 690
SmoI	CTYRAG	2 cut(s)	299, 690
Sse9I	AATT	6 cut(s)	353, 483, 546, 685, 799, 881
SsiI	CCGC	2 cut(s)	32, 699
SspMI	CTAG	3 cut(s)	117, 450, 756
StyD4I	CCNGG	8 cut(s)	174, 175, 310, 324, 573, 898, 919, 937
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	680, 925
TasI	AATT	6 cut(s)	353, 483, 546, 685, 799, 881
TatI	WGTACW	1 cut(s)	638
Tru1I	TTAA	2 cut(s)	15, 836
Tru9I	TTAA	2 cut(s)	15, 836
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	1 cut(s)	537
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	537
TspDTI	ATGAA	2 cut(s)	156, 882
TspGWI	ACGGA	2 cut(s)	144, 680
TspMI	CCCGGG	1 cut(s)	175
TspRI	CASTG	1 cut(s)	664
VpaK11BI	GGWCC	4 cut(s)	229, 422, 430, 620
XagI	CCTNNNNNAGG	1 cut(s)	520
XapI	RAATTY	2 cut(s)	546, 799
XceI	RCATGY	2 cut(s)	511, 796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmaI	CCCGGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	3 cut(s)	117, 450, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.