Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007775

Physical Location & Seq

Genomic Coordinates Forward (+)

2339249 .. 2342589

Gene Structure 3341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG033700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCCAGCTGCGCTTAATCTGGGTTGTGTTGCGGTAAGAGCTTCAAGAAGCCAACGCCACAGTAATCCAAGGAGTTACCTCATTCCGAGACCACAAGAACCCCCTTCTCCTTCTCCACCCACTAGGATTTTGGATAGACCATCTGATGAACGACGCCCTCCGTTTTCTCCTCCACATCACCCGGGAAATCAATCAAACTTTGCAAGACCCTCAGCTGTGAGTTCTGCACATTTGGTCCCAGAAGCTCACAGTCATGCCAACCAAAGTAGTAACCTGACTAACCCTCGGCATTACCCATTTTCCCTTGAGAATGTTCCTGGTGGCCATAACCAGGTAACAACAATGTCAACCAACAACCAATTGAACTTAGGTTCAGTATATCCATTGTATTATGGATCTCACTATCAAACTGAAGCATCCCAGTTAGGTCCTCAGGTCCCAGAAAATGCACATTCTAGGACTATATATGTTGGTACACCGGTTACATCAATTCAGGAGCCTACCAAGCAGAACATTTTCACCTGTCAAAGGGCTGAAAATGTGTCACACAGAATTCCCCAAGTAGATGTCATGGACATCCAGGAGAAGCCACGAGAAGCAGAATATGATTTATCTTTGAGGTTGGGTCCTGTCTCACATTTATGTACTGATAGAAGCTTCGCCAGTGAAACGGAAGATATTGGTTCGAGTAATTCTCAAGAGGGTGGAAAGTTCAACGATTATTCACCATCTATAAGTAAGGAGTTCTGTTTCTTTCCTACTAAGACTGCTTATGATCCCTCTGAGTCCACTTCAAGCATGTGGAATTCAGAGGGTGAAGATCGGAGTTTGGAGCCAACTTTAAAGAAGCGCAAAGCAACTTTTAGAAACAATGAAGAGGATGGGCAATTTTTCTGCCAGCCACCTGGCCAGCCCAACAAGTTTCCTGGTCGATTTACAGGGCCAGGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.21

Weight (kDa)

6.64

Isoelectric Point (pI)

68.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24150 AT3G24150
fragaria_vesca	FvH4_1g02850
malus_domestica	MD02G1028200.v1.1 MD15G1169900.v1.1
prunus_persica	Prupe.7G246600_v2.0.a1 Prupe.7G246600_v2.0.a1
pyrus_communis	pycom02g02320 pycom15g15150
rosa_chinensis	RchiOBHm_Chr1g0374351 RchiOBHm_Chr2g0087961
rosa_laevigata	RLG00000015914
rosa_multiflora	Rmu_sc0003275.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153100
rosa_rugosa	Rorug01G0480000 Rorug01G0480100 Rorug01G0480100 Rorug01G0480100
rosa_samantha	Rh2AG034700 Rh2BG033700 Rh2CG034700 Rh2DG034500
rosa_wichuraiana	Rw1G034100 Rw2G002710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	2 cut(s)	403, 770
AcoI	YGGCCR	2 cut(s)	322, 907
AcsI	RAATTY	2 cut(s)	552, 805
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	154
AfaI	GTAC	2 cut(s)	475, 646
AfiI	CCNNNNNNNGG	2 cut(s)	331, 528
AgeI	ACCGGT	1 cut(s)	478
AgsI	TTSAA	4 cut(s)	45, 364, 715, 795
AjnI	CCWGG	6 cut(s)	316, 330, 579, 904, 925, 943
AluBI	AGCT	5 cut(s)	8, 41, 215, 245, 657
AluI	AGCT	5 cut(s)	8, 41, 215, 245, 657
Alw26I	GTCTC	2 cut(s)	82, 637
AlwI	GGATC	2 cut(s)	403, 770
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	3 cut(s)	322, 907, 941
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	552, 805
AsiGI	ACCGGT	1 cut(s)	478
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	13, 852
AspS9I	GGNCC	5 cut(s)	235, 428, 436, 626, 941
AsuC2I	CCSGG	2 cut(s)	182, 183
AsuHPI	GGTGA	4 cut(s)	170, 511, 717, 827
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	4 cut(s)	235, 428, 436, 626
AxyI	CCTNAGG	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BalI	TGGCCA	2 cut(s)	324, 909
BauI	CACGAG	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	211
BccI	CCATC	3 cut(s)	148, 736, 875
BciT130I	CCWGG	6 cut(s)	318, 332, 581, 906, 927, 945
BcnI	CCSGG	2 cut(s)	182, 183
BcoDI	GTCTC	2 cut(s)	82, 637
BfaI	CTAG	2 cut(s)	123, 456
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	8 cut(s)	182, 183, 318, 332, 581, 906, 927, 945
Bme18I	GGWCC	4 cut(s)	235, 428, 436, 626
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	5 cut(s)	235, 428, 436, 626, 941
BmiI	GGNNCC	5 cut(s)	237, 438, 498, 627, 834
BmrFI	CCNGG	8 cut(s)	182, 183, 318, 332, 581, 906, 927, 945
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	415
BplI	GAGNNNNNCTC	2 cut(s)	679, 711
Bpu10I	CCTNAGC	1 cut(s)	211
BpuEI	CTTGAG	2 cut(s)	326, 681
BpuMI	CCSGG	2 cut(s)	182, 183
BsaHI	GRCGYC	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	68, 181, 284
BsaWI	WCCGGW	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 528
Bse118I	RCCGGY	1 cut(s)	478
Bse1I	ACTGG	2 cut(s)	421, 663
Bse21I	CCTNAGG	1 cut(s)	432
BseBI	CCWGG	6 cut(s)	318, 332, 581, 906, 927, 945
BseDI	CCNNGG	3 cut(s)	68, 181, 284
BseGI	GGATG	3 cut(s)	416, 576, 886
BseLI	CCNNNNNNNGG	2 cut(s)	331, 528
BseMII	CTCAG	3 cut(s)	225, 446, 774
BseNI	ACTGG	2 cut(s)	421, 663
BseRI	GAGGAG	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	324, 909, 943
BshTI	ACCGGT	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	182, 479
BslFI	GGGAC	2 cut(s)	221, 422
BslI	CCNNNNNNNGG	2 cut(s)	331, 528
BsmAI	GTCTC	2 cut(s)	82, 637
BsmFI	GGGAC	2 cut(s)	221, 422
BsnI	GGCC	3 cut(s)	324, 909, 943
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	395, 775, 820
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	3 cut(s)	324, 909, 943
BspCNI	CTCAG	3 cut(s)	224, 445, 775
BspLI	GGNNCC	5 cut(s)	237, 438, 498, 627, 834
BspPI	GGATC	2 cut(s)	403, 770
BspTNI	GGTCTC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	421, 663
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	3 cut(s)	68, 181, 284
BssMI	GATC	3 cut(s)	395, 775, 820
BssNI	GRCGYC	1 cut(s)	154
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	6 cut(s)	318, 332, 581, 906, 927, 945
Bst4CI	ACNGT	2 cut(s)	62, 251
Bst6I	CTCTTC	1 cut(s)	870
BstACI	GRCGYC	1 cut(s)	154
BstC8I	GCNNGC	3 cut(s)	6, 899, 911
BstDEI	CTNAG	5 cut(s)	211, 367, 432, 762, 783
BstENI	CCTNNNNNAGG	1 cut(s)	526
BstF5I	GGATG	3 cut(s)	416, 576, 886
BstHHI	GCGC	2 cut(s)	13, 852
BstKTI	GATC	3 cut(s)	398, 778, 823
BstMAI	GTCTC	2 cut(s)	82, 637
BstMBI	GATC	3 cut(s)	395, 775, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 38, 505
BstNI	CCWGG	6 cut(s)	318, 332, 581, 906, 927, 945
BstNSI	RCATGY	1 cut(s)	802
BstSCI	CCNGG	8 cut(s)	180, 181, 316, 330, 579, 904, 925, 943
BstX2I	RGATCY	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	905
BstYI	RGATCY	1 cut(s)	395
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	324, 909, 943
BtsCI	GGATG	3 cut(s)	416, 576, 886
BtsIMutI	CAGTG	1 cut(s)	670
Cac8I	GCNNGC	3 cut(s)	6, 899, 911
CfoI	GCGC	2 cut(s)	13, 852
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	5 cut(s)	235, 428, 436, 626, 941
Cfr9I	CCCGGG	1 cut(s)	181
CseI	GACGC	1 cut(s)	162
CsiI	ACCWGGT	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	474, 645
CspAI	ACCGGT	1 cut(s)	478
CviAII	CATG	3 cut(s)	254, 571, 799
CviQI	GTAC	2 cut(s)	474, 645
DdeI	CTNAG	5 cut(s)	211, 367, 432, 762, 783
DpnI	GATC	3 cut(s)	397, 777, 822
DpnII	GATC	3 cut(s)	395, 775, 820
DraI	TTTAAA	1 cut(s)	843
EaeI	YGGCCR	2 cut(s)	322, 907
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Eco130I	CCWWGG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	4 cut(s)	235, 428, 436, 626
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	526
EcoO109I	RGGNCCY	3 cut(s)	428, 436, 626
EcoRI	GAATTC	2 cut(s)	552, 805
EcoRII	CCWGG	6 cut(s)	316, 330, 579, 904, 925, 943
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	257, 574, 802
FaqI	GGGAC	2 cut(s)	221, 422
FatI	CATG	3 cut(s)	253, 570, 798
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	403, 563, 893
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	2 cut(s)	123, 456
GlaI	GCGC	2 cut(s)	12, 851
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	3 cut(s)	324, 909, 943
HapII	CCGG	2 cut(s)	182, 479
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	2 cut(s)	13, 852
Hin1I	GRCGYC	1 cut(s)	154
Hin1II	CATG	3 cut(s)	257, 574, 802
Hin6I	GCGC	2 cut(s)	11, 850
HinP1I	GCGC	2 cut(s)	11, 850
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	655
HinfI	GANTC	1 cut(s)	785
HpaII	CCGG	2 cut(s)	182, 479
HphI	GGTGA	4 cut(s)	170, 511, 717, 827
Hpy166II	GTNNAC	3 cut(s)	348, 476, 789
Hpy188I	TCNGA	5 cut(s)	87, 145, 784, 811, 825
Hpy188III	TCNNGA	3 cut(s)	45, 494, 698
Hpy8I	GTNNAC	3 cut(s)	348, 476, 789
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	114, 120
HpyCH4III	ACNGT	2 cut(s)	62, 251
HpyCH4V	TGCA	3 cut(s)	203, 227, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 38, 505
HpyF3I	CTNAG	5 cut(s)	211, 367, 432, 762, 783
Hsp92I	GRCGYC	1 cut(s)	154
Hsp92II	CATG	3 cut(s)	257, 574, 802
HspAI	GCGC	2 cut(s)	11, 850
Kzo9I	GATC	3 cut(s)	395, 775, 820
LmnI	GCTCC	2 cut(s)	496, 832
LweI	GCATC	1 cut(s)	425
MabI	ACCWGGT	1 cut(s)	330
MaeI	CTAG	2 cut(s)	123, 456
MaeIII	GTNAC	5 cut(s)	74, 269, 334, 481, 543
MalI	GATC	3 cut(s)	397, 777, 822
MboI	GATC	3 cut(s)	395, 775, 820
MboII	GAAGA	3 cut(s)	686, 830, 887
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	1 cut(s)	395
MlsI	TGGCCA	2 cut(s)	324, 909
MluCI	AATT	6 cut(s)	359, 489, 552, 691, 805, 887
MluNI	TGGCCA	2 cut(s)	324, 909
MlyI	GAGTC	1 cut(s)	794
Mox20I	TGGCCA	2 cut(s)	324, 909
MroXI	GAANNNNTTC	1 cut(s)	515
MscI	TGGCCA	2 cut(s)	324, 909
MseI	TTAA	2 cut(s)	15, 842
MslI	CAYNNNNRTG	2 cut(s)	252, 640
Msp20I	TGGCCA	2 cut(s)	324, 909
MspA1I	CMGCKG	2 cut(s)	8, 215
MspI	CCGG	2 cut(s)	182, 479
MspR9I	CCNGG	8 cut(s)	182, 183, 318, 332, 581, 906, 927, 945
MunI	CAATTG	1 cut(s)	359
MvaI	CCWGG	6 cut(s)	318, 332, 581, 906, 927, 945
MwoI	GCNNNNNNNGC	3 cut(s)	10, 38, 505
NciI	CCSGG	2 cut(s)	182, 183
NdeII	GATC	3 cut(s)	395, 775, 820
NlaIII	CATG	3 cut(s)	257, 574, 802
NlaIV	GGNNCC	5 cut(s)	237, 438, 498, 627, 834
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	543
NspI	RCATGY	1 cut(s)	802
PdmI	GAANNNNTTC	1 cut(s)	515
PfoI	TCCNGGA	1 cut(s)	579
PinAI	ACCGGT	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	793
PpuMI	RGGWCCY	3 cut(s)	428, 436, 626
Psp5II	RGGWCCY	3 cut(s)	428, 436, 626
Psp6I	CCWGG	6 cut(s)	316, 330, 579, 904, 925, 943
PspGI	CCWGG	6 cut(s)	316, 330, 579, 904, 925, 943
PspN4I	GGNNCC	5 cut(s)	237, 438, 498, 627, 834
PspPI	GGNCC	5 cut(s)	235, 428, 436, 626, 941
PspPPI	RGGWCCY	3 cut(s)	428, 436, 626
PsuI	RGATCY	1 cut(s)	395
PvuII	CAGCTG	2 cut(s)	8, 215
RsaI	GTAC	2 cut(s)	475, 646
RsaNI	GTAC	2 cut(s)	474, 645
RseI	CAYNNNNRTG	2 cut(s)	252, 640
SaqAI	TTAA	2 cut(s)	15, 842
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	3 cut(s)	395, 775, 820
Sau96I	GGNCC	5 cut(s)	235, 428, 436, 626, 941
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	8 cut(s)	182, 183, 318, 332, 581, 906, 927, 945
SexAI	ACCWGGT	1 cut(s)	330
SfaNI	GCATC	1 cut(s)	425
SinI	GGWCC	4 cut(s)	235, 428, 436, 626
SmaI	CCCGGG	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	252, 640
SmlI	CTYRAG	2 cut(s)	305, 696
SmoI	CTYRAG	2 cut(s)	305, 696
Sse9I	AATT	6 cut(s)	359, 489, 552, 691, 805, 887
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	123, 456
StyD4I	CCNGG	8 cut(s)	180, 181, 316, 330, 579, 904, 925, 943
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	62, 251
TaqI	TCGA	2 cut(s)	686, 931
TasI	AATT	6 cut(s)	359, 489, 552, 691, 805, 887
TatI	WGTACW	1 cut(s)	644
Tru1I	TTAA	2 cut(s)	15, 842
Tru9I	TTAA	2 cut(s)	15, 842
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	543
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	2 cut(s)	162, 888
TspGWI	ACGGA	2 cut(s)	150, 686
TspMI	CCCGGG	1 cut(s)	181
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	4 cut(s)	235, 428, 436, 626
XagI	CCTNNNNNAGG	1 cut(s)	526
XapI	RAATTY	2 cut(s)	552, 805
XceI	RCATGY	1 cut(s)	802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmaI	CCCGGG	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	2 cut(s)	123, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.