Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007775

Physical Location & Seq

Genomic Coordinates Reverse (-)

89900719 .. 89902584

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCCAAGGCCGGGTCCGAGGCCGTATGAGTGCGTCAGGCGGGCTTGGCATAGCGATAGGCACCAACCCATGAGAGGCTCCATCATTCACCAGATGTTCAGGGTCGTCAGTGAAGTTCATAGCTCCAAAACGAAGAACAACAAGGAGTACCAGGAAAAGCTGCCCATGGTGGTTTTCAGAGCAGAGGAAATCATGTATTCCAAAGCCAATTCAGAGGCTGAGTACATGAATTCTGATACACTATGGGATAGAGCAAATGACGCCATTAACACAATTATTCGAAGAGATGAGGGCACTGAAACCGGGGGGACCTTTTGCCGCCGTGTGTTGAAGCTGCGCTTAATCTGGGTTGTGTTGCGGATTTTGGATAGACCATCTGATGAACGACGCCCTCCGTTTTCTCCTCCACATCACCCGGGAAATCAATTAAACTTTGCAAGACCCTCAGCTGTGAGTTCTGCACATTTGGTCCCAGAAGCTCACAGTCATGCCAACCACAGTAGTAACCTGACTAACCCTCGGCATTACCCATTTTCAATTGAGAATGTTCCTGGTGGCCATAACCAGGTAACAACAATGTCAACCAACAACCAATTGAACTTAGGTTCAGTATATCCATTGTATTATGGATCTCACTATCAAACTGAAGCATCCCAGTTAGGTCCCCAGGTCCCAGAAAATGCACATTCTAGGACTATATATGTTGGTACACCAGTTACATCAATTCAGGAGCCTACCAAGCAGAACATTTTCACCTGTCAAAGGGCTGAAAATGTGTCACACAGAATTCCCCAAGTAGATGTCATGGACGTCCAGGAGAAGCCACGAGAAGCAGAATATGATTTATCTTTGAGGTTGGGTCCTGTCTCACATTTATGTACTGATAGAAGCTTGGCCAGTGAAACGGAAGATATTGGTTCGAGTAATTCTCAAGAGGGCGGAAAGTTCAACGATTATTCACCATCTATAAGTAAGGAGTTCTGTTTCTTTCCTACTAAGACTGCTTATGATCCCTCTGAGTCCACTTCAAGCATGTGGAACTCAGAGGGTGAAGATCGGAGTTTGGAGCCAACTTTAAAGAAGCGCAAAGCAACTTTTAGAAACAATGAAGAGGATGGGCAATTTTTCTGCCAGCCACCTGGCCAGCCCAACAAGTTTCCTGGTCGATTTACAGGGCCAGGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

44.83

Weight (kDa)

6.98

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24150 AT3G24150
fragaria_vesca	FvH4_1g02850
malus_domestica	MD02G1028200.v1.1 MD15G1169900.v1.1
prunus_persica	Prupe.7G246600_v2.0.a1 Prupe.7G246600_v2.0.a1
pyrus_communis	pycom02g02320 pycom15g15150
rosa_chinensis	RchiOBHm_Chr1g0374351 RchiOBHm_Chr2g0087961
rosa_laevigata	RLG00000015914
rosa_multiflora	Rmu_sc0003275.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153100
rosa_rugosa	Rorug01G0480000 Rorug01G0480100 Rorug01G0480100 Rorug01G0480100
rosa_samantha	Rh2AG034700 Rh2BG033700 Rh2CG034700 Rh2DG034500
rosa_wichuraiana	Rw1G034100 Rw2G002710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	813
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	4 cut(s)	40, 319, 358, 939
AclWI	GGATC	2 cut(s)	637, 1004
AcoI	YGGCCR	3 cut(s)	556, 894, 1141
AcsI	RAATTY	2 cut(s)	229, 786
AcuI	CTGAAG	1 cut(s)	666
AcyI	GRCGYC	3 cut(s)	261, 388, 810
AfaI	GTAC	4 cut(s)	149, 224, 709, 880
AfiI	CCNNNNNNNGG	4 cut(s)	11, 74, 565, 762
AgsI	TTSAA	5 cut(s)	331, 537, 598, 949, 1029
AjnI	CCWGG	8 cut(s)	150, 550, 564, 666, 813, 1138, 1159, 1177
AluBI	AGCT	6 cut(s)	123, 160, 334, 449, 479, 891
AluI	AGCT	6 cut(s)	123, 160, 334, 449, 479, 891
Alw26I	GTCTC	1 cut(s)	871
AlwI	GGATC	2 cut(s)	637, 1004
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	415
AoxI	GGCC	6 cut(s)	8, 20, 556, 894, 1141, 1175
ApeKI	GCWGC	2 cut(s)	160, 334
ApoI	RAATTY	2 cut(s)	229, 786
Asp700I	GAANNNNTTC	1 cut(s)	749
AspLEI	GCGC	2 cut(s)	339, 1086
AspS9I	GGNCC	7 cut(s)	14, 309, 469, 662, 670, 860, 1175
AsuC2I	CCSGG	4 cut(s)	12, 304, 416, 417
AsuHPI	GGTGA	5 cut(s)	80, 404, 745, 951, 1061
AsuII	TTCGAA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	6 cut(s)	14, 309, 469, 662, 670, 860
BaeGI	GKGCMC	1 cut(s)	296
BaeI	ACNNNNGTAYC	2 cut(s)	699, 732
BalI	TGGCCA	3 cut(s)	558, 896, 1143
BanI	GGYRCC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	825
BbvCI	CCTCAGC	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	147, 321
BccI	CCATC	4 cut(s)	89, 382, 970, 1109
BceAI	ACGGC	2 cut(s)	7, 306
BciT130I	CCWGG	8 cut(s)	152, 552, 566, 668, 815, 1140, 1161, 1179
BcnI	CCSGG	4 cut(s)	12, 304, 416, 417
BcoDI	GTCTC	1 cut(s)	871
BfaI	CTAG	1 cut(s)	690
BisI	GCNGC	3 cut(s)	161, 319, 335
BlsI	GCNGC	3 cut(s)	162, 320, 336
Bme18I	GGWCC	6 cut(s)	14, 309, 469, 662, 670, 860
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	7 cut(s)	14, 309, 469, 662, 670, 860, 1175
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	1 cut(s)	659
BmuI	ACTGGG	1 cut(s)	649
BplI	GAGNNNNNCTC	2 cut(s)	913, 945
Bpu10I	CCTNAGC	1 cut(s)	445
Bpu14I	TTCGAA	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	915
BpuMI	CCSGG	4 cut(s)	12, 304, 416, 417
BsaHI	GRCGYC	3 cut(s)	261, 388, 810
BsaJI	CCNNGG	7 cut(s)	5, 17, 165, 303, 415, 518, 666
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 74, 565, 762
Bse1I	ACTGG	3 cut(s)	655, 713, 897
BseBI	CCWGG	8 cut(s)	152, 552, 566, 668, 815, 1140, 1161, 1179
BseDI	CCNNGG	7 cut(s)	5, 17, 165, 303, 415, 518, 666
BseGI	GGATG	2 cut(s)	650, 1120
BseLI	CCNNNNNNNGG	4 cut(s)	11, 74, 565, 762
BseMII	CTCAG	4 cut(s)	210, 459, 1008, 1056
BseNI	ACTGG	3 cut(s)	655, 713, 897
BseRI	GAGGAG	1 cut(s)	393
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	147, 321
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	6 cut(s)	10, 22, 558, 896, 1143, 1177
BshNI	GGYRCC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	3 cut(s)	11, 303, 416
BslFI	GGGAC	4 cut(s)	322, 455, 648, 656
BslI	CCNNNNNNNGG	4 cut(s)	11, 74, 565, 762
BsmAI	GTCTC	1 cut(s)	871
BsmFI	GGGAC	4 cut(s)	322, 455, 648, 656
BsnI	GGCC	6 cut(s)	10, 22, 558, 896, 1143, 1177
BsoBI	CYCGRG	1 cut(s)	415
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	629, 1009, 1054
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	4 cut(s)	40, 319, 358, 939
BspANI	GGCC	6 cut(s)	10, 22, 558, 896, 1143, 1177
BspCNI	CTCAG	4 cut(s)	211, 458, 1009, 1055
BspPI	GGATC	2 cut(s)	637, 1004
BspT104I	TTCGAA	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	60
BsrI	ACTGG	3 cut(s)	655, 713, 897
BssECI	CCNNGG	7 cut(s)	5, 17, 165, 303, 415, 518, 666
BssMI	GATC	3 cut(s)	629, 1009, 1054
BssNI	GRCGYC	3 cut(s)	261, 388, 810
BssSI	CACGAG	1 cut(s)	825
BssT1I	CCWWGG	2 cut(s)	5, 165
Bst2BI	CACGAG	1 cut(s)	825
Bst2UI	CCWGG	8 cut(s)	152, 552, 566, 668, 815, 1140, 1161, 1179
Bst4CI	ACNGT	2 cut(s)	485, 500
Bst6I	CTCTTC	2 cut(s)	277, 1104
BstACI	GRCGYC	3 cut(s)	261, 388, 810
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	42, 1133, 1145
BstDEI	CTNAG	6 cut(s)	219, 445, 601, 996, 1017, 1042
BstDSI	CCRYGG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	760
BstF5I	GGATG	2 cut(s)	650, 1120
BstHHI	GCGC	2 cut(s)	339, 1086
BstKTI	GATC	3 cut(s)	632, 1012, 1057
BstMAI	GTCTC	1 cut(s)	871
BstMBI	GATC	3 cut(s)	629, 1009, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 260, 739
BstNI	CCWGG	8 cut(s)	152, 552, 566, 668, 815, 1140, 1161, 1179
BstNSI	RCATGY	1 cut(s)	1036
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	147, 321
BstX2I	RGATCY	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	1139
BstYI	RGATCY	1 cut(s)	629
BsuRI	GGCC	6 cut(s)	10, 22, 558, 896, 1143, 1177
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	650, 1120
BtsIMutI	CAGTG	3 cut(s)	115, 294, 904
Cac8I	GCNNGC	3 cut(s)	42, 1133, 1145
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	2 cut(s)	339, 1086
Cfr13I	GGNCC	7 cut(s)	14, 309, 469, 662, 670, 860, 1175
Cfr9I	CCCGGG	1 cut(s)	415
CseI	GACGC	3 cut(s)	22, 269, 396
CsiI	ACCWGGT	1 cut(s)	564
Csp6I	GTAC	4 cut(s)	148, 223, 708, 879
CviAII	CATG	7 cut(s)	70, 166, 193, 226, 488, 805, 1033
CviQI	GTAC	4 cut(s)	148, 223, 708, 879
DdeI	CTNAG	6 cut(s)	219, 445, 601, 996, 1017, 1042
DpnI	GATC	3 cut(s)	631, 1011, 1056
DpnII	GATC	3 cut(s)	629, 1009, 1054
DraI	TTTAAA	1 cut(s)	1077
EaeI	YGGCCR	3 cut(s)	556, 894, 1141
Eam1104I	CTCTTC	2 cut(s)	277, 1104
EarI	CTCTTC	2 cut(s)	277, 1104
EciI	GGCGGA	1 cut(s)	954
Eco130I	CCWWGG	2 cut(s)	5, 165
Eco47I	GGWCC	6 cut(s)	14, 309, 469, 662, 670, 860
Eco57I	CTGAAG	1 cut(s)	666
Eco88I	CYCGRG	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	760
EcoO109I	RGGNCCY	4 cut(s)	309, 662, 670, 860
EcoRI	GAATTC	2 cut(s)	229, 786
EcoRII	CCWGG	8 cut(s)	150, 550, 564, 666, 813, 1138, 1159, 1177
EcoT14I	CCWWGG	2 cut(s)	5, 165
ErhI	CCWWGG	2 cut(s)	5, 165
FaeI	CATG	7 cut(s)	73, 169, 196, 229, 491, 808, 1036
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	4 cut(s)	322, 455, 648, 656
FatI	CATG	7 cut(s)	69, 165, 192, 225, 487, 804, 1032
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	161, 319, 335
FokI	GGATG	2 cut(s)	637, 1127
Fsp4HI	GCNGC	3 cut(s)	161, 319, 335
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	2 cut(s)	338, 1085
GluI	GCNGC	3 cut(s)	161, 319, 335
HaeIII	GGCC	6 cut(s)	10, 22, 558, 896, 1143, 1177
HapII	CCGG	3 cut(s)	11, 303, 416
HgaI	GACGC	3 cut(s)	22, 269, 396
HhaI	GCGC	2 cut(s)	339, 1086
Hin1I	GRCGYC	3 cut(s)	261, 388, 810
Hin1II	CATG	7 cut(s)	73, 169, 196, 229, 491, 808, 1036
Hin6I	GCGC	2 cut(s)	337, 1084
HinP1I	GCGC	2 cut(s)	337, 1084
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	1 cut(s)	889
HinfI	GANTC	1 cut(s)	1019
HpaII	CCGG	3 cut(s)	11, 303, 416
HphI	GGTGA	5 cut(s)	80, 404, 745, 951, 1061
Hpy166II	GTNNAC	3 cut(s)	582, 710, 1023
Hpy188I	TCNGA	8 cut(s)	18, 179, 214, 235, 379, 1018, 1045, 1059
Hpy188III	TCNNGA	2 cut(s)	728, 932
Hpy8I	GTNNAC	3 cut(s)	582, 710, 1023
Hpy99I	CGWCG	1 cut(s)	390
HpyCH4III	ACNGT	2 cut(s)	485, 500
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	3 cut(s)	437, 461, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 260, 739
HpyF3I	CTNAG	6 cut(s)	219, 445, 601, 996, 1017, 1042
HpySE526I	ACGT	1 cut(s)	810
Hsp92I	GRCGYC	3 cut(s)	261, 388, 810
Hsp92II	CATG	7 cut(s)	73, 169, 196, 229, 491, 808, 1036
HspAI	GCGC	2 cut(s)	337, 1084
Kzo9I	GATC	3 cut(s)	629, 1009, 1054
LmnI	GCTCC	4 cut(s)	83, 128, 730, 1066
Lsp1109I	GCAGC	2 cut(s)	147, 321
LweI	GCATC	1 cut(s)	659
MabI	ACCWGGT	1 cut(s)	564
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	4 cut(s)	503, 568, 715, 777
MalI	GATC	3 cut(s)	631, 1011, 1056
MboI	GATC	3 cut(s)	629, 1009, 1054
MboII	GAAGA	5 cut(s)	145, 294, 920, 1064, 1121
MfeI	CAATTG	2 cut(s)	537, 593
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	3 cut(s)	558, 896, 1143
MluNI	TGGCCA	3 cut(s)	558, 896, 1143
MlyI	GAGTC	1 cut(s)	1028
Mox20I	TGGCCA	3 cut(s)	558, 896, 1143
MroXI	GAANNNNTTC	1 cut(s)	749
MscI	TGGCCA	3 cut(s)	558, 896, 1143
MseI	TTAA	4 cut(s)	267, 341, 428, 1076
MslI	CAYNNNNRTG	2 cut(s)	486, 874
Msp20I	TGGCCA	3 cut(s)	558, 896, 1143
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	3 cut(s)	11, 303, 416
MunI	CAATTG	2 cut(s)	537, 593
MvaI	CCWGG	8 cut(s)	152, 552, 566, 668, 815, 1140, 1161, 1179
MwoI	GCNNNNNNNGC	3 cut(s)	46, 260, 739
NciI	CCSGG	4 cut(s)	12, 304, 416, 417
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	629, 1009, 1054
NlaIII	CATG	7 cut(s)	73, 169, 196, 229, 491, 808, 1036
NmeAIII	GCCGAG	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	777
NspI	RCATGY	1 cut(s)	1036
NspV	TTCGAA	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	749
PfoI	TCCNGGA	1 cut(s)	813
PkrI	GCNGC	3 cut(s)	162, 320, 336
PleI	GAGTC	1 cut(s)	1027
PpsI	GAGTC	1 cut(s)	1027
PpuMI	RGGWCCY	4 cut(s)	309, 662, 670, 860
Psp5II	RGGWCCY	4 cut(s)	309, 662, 670, 860
Psp6I	CCWGG	8 cut(s)	150, 550, 564, 666, 813, 1138, 1159, 1177
PspGI	CCWGG	8 cut(s)	150, 550, 564, 666, 813, 1138, 1159, 1177
PspPI	GGNCC	7 cut(s)	14, 309, 469, 662, 670, 860, 1175
PspPPI	RGGWCCY	4 cut(s)	309, 662, 670, 860
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	4 cut(s)	149, 224, 709, 880
RsaNI	GTAC	4 cut(s)	148, 223, 708, 879
RseI	CAYNNNNRTG	2 cut(s)	486, 874
SaqAI	TTAA	4 cut(s)	267, 341, 428, 1076
SatI	GCNGC	3 cut(s)	161, 319, 335
Sau3AI	GATC	3 cut(s)	629, 1009, 1054
Sau96I	GGNCC	7 cut(s)	14, 309, 469, 662, 670, 860, 1175
SchI	GAGTC	1 cut(s)	1028
SduI	GDGCHC	1 cut(s)	296
SexAI	ACCWGGT	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	659
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	6 cut(s)	14, 309, 469, 662, 670, 860
SmaI	CCCGGG	1 cut(s)	417
SmiMI	CAYNNNNRTG	2 cut(s)	486, 874
SmlI	CTYRAG	1 cut(s)	930
SmoI	CTYRAG	1 cut(s)	930
SsiI	CCGC	4 cut(s)	40, 319, 358, 939
SspMI	CTAG	1 cut(s)	690
StyI	CCWWGG	2 cut(s)	5, 165
TaaI	ACNGT	2 cut(s)	485, 500
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	3 cut(s)	280, 920, 1165
TatI	WGTACW	2 cut(s)	222, 878
TauI	GCSGC	1 cut(s)	321
Tru1I	TTAA	4 cut(s)	267, 341, 428, 1076
Tru9I	TTAA	4 cut(s)	267, 341, 428, 1076
TscAI	CASTG	3 cut(s)	115, 301, 904
TseFI	GTSAC	1 cut(s)	777
TseI	GCWGC	2 cut(s)	160, 334
Tsp45I	GTSAC	1 cut(s)	777
TspDTI	ATGAA	4 cut(s)	107, 242, 396, 1122
TspGWI	ACGGA	2 cut(s)	384, 920
TspMI	CCCGGG	1 cut(s)	415
TspRI	CASTG	3 cut(s)	115, 301, 904
VpaK11BI	GGWCC	6 cut(s)	14, 309, 469, 662, 670, 860
XagI	CCTNNNNNAGG	1 cut(s)	760
XapI	RAATTY	2 cut(s)	229, 786
XceI	RCATGY	1 cut(s)	1036
XmaI	CCCGGG	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	1 cut(s)	690
ZraI	GACGTC	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.