Rh2CG034700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007775
Physical Location & Seq
Forward (+)
2677530 .. 2680796
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG034700.1

Sequence Viewer

Length: 948 bp
ATGCCAGCTGCGCTTAATCTGGGTTGTGTTGCGGTAAGAGCTTCAAGAAGCCAACGCCACAGTAATCCAAGGAGTTACCTCATTCCGAGACCACAAGAACCCCCCTCTCCACCCACTAGGATTTTGGATAGACCATCTGATGAACGACGCCCTCCGTTTTCTCCTCCACATCACCCGGGAAATCAATCGAACTTTGCAAGACCCTCAGCTGTGAGCTCTGCACATTTGGTCCCAGAAGCTCACAGTCACGCCAACCAAAGTAGTAACCTGACTAACCCTCGGCATTACCCATTTTCCCTTGAGAATGCTCCTGGTGGCCATAACCAGGTAACAACAATGTCAACCAACAACCAATTGAACTTAGGTTCAGTATATCCATTGTATTATGGATCTCACTATCAAACTGAAGCATCCCAGTTAGGTCCTCAGGTCCCAGAAAATGCACATTCTAGGACTATATATGTTGGTACACCAGTTACATCAATTCAGGAGCCTACCAAGCAGAACATTTTCACCTGTCAAAGGGCTGAAAATGTGTCACACAGAATTCCCCAAGTAGATGTCATGGACATCCAGGAGAAGCCACGAGAAGCAGAATATGATTTATCTTTGAGGTTGGGTCCTGTCTCACATTTATGTACTGATAGAAGCTTGGCCAGTGAAACGGAAGATATTGGTTCGAGTAATTCTCAAGAGGGCGGAAAGTTCAACGATTATTCACCATCTATAAGTAAGGAGTTCTGTTTCTTTCCTACTAGGACTGCTTATGATCCCTCTGAGTCCACTTCAAGCATGTGGAATTCAGAGGGTGAAGATCGGAGTTTGGAGCCAACTTTAAAGAAGCGCAAAGCAACTTTTAGAAACAATGAAGAGGATGGGCAATTTTTCTGCCAGCCACCTGGCCAGCCCAACAAGTTTCCTGGTCGATTTTCAGGGCCAGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

34.98

Weight (kDa)

6.64

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 32, 699
AclWI GGATC 2 cut(s) 397, 764
AcoI YGGCCR 3 cut(s) 316, 654, 901
AcsI RAATTY 2 cut(s) 546, 799
AcuI CTGAAG 1 cut(s) 426
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 2 cut(s) 469, 640
AfiI CCNNNNNNNGG 2 cut(s) 325, 522
AgsI TTSAA 4 cut(s) 45, 358, 709, 789
AjnI CCWGG 6 cut(s) 310, 324, 573, 898, 919, 937
AluBI AGCT 6 cut(s) 8, 41, 209, 216, 239, 651
AluI AGCT 6 cut(s) 8, 41, 209, 216, 239, 651
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 82, 631
AlwI GGATC 2 cut(s) 397, 764
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 4 cut(s) 316, 654, 901, 935
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 2 cut(s) 546, 799
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 2 cut(s) 13, 846
AspS9I GGNCC 5 cut(s) 229, 422, 430, 620, 935
AsuC2I CCSGG 2 cut(s) 176, 177
AsuHPI GGTGA 4 cut(s) 164, 505, 711, 821
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 4 cut(s) 229, 422, 430, 620
AxyI CCTNAGG 1 cut(s) 426
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BalI TGGCCA 3 cut(s) 318, 656, 903
BanII GRGCYC 1 cut(s) 218
BauI CACGAG 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 218
BbvCI CCTCAGC 1 cut(s) 205
BccI CCATC 3 cut(s) 142, 730, 869
BciT130I CCWGG 6 cut(s) 312, 326, 575, 900, 921, 939
BcnI CCSGG 2 cut(s) 176, 177
BcoDI GTCTC 2 cut(s) 82, 631
BfaI CTAG 3 cut(s) 117, 450, 756
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 8 cut(s) 176, 177, 312, 326, 575, 900, 921, 939
Bme18I GGWCC 4 cut(s) 229, 422, 430, 620
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 5 cut(s) 229, 422, 430, 620, 935
BmiI GGNNCC 5 cut(s) 231, 432, 492, 621, 828
BmrFI CCNGG 8 cut(s) 176, 177, 312, 326, 575, 900, 921, 939
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 419
BmuI ACTGGG 1 cut(s) 409
BplI GAGNNNNNCTC 2 cut(s) 673, 705
Bpu10I CCTNAGC 1 cut(s) 205
BpuEI CTTGAG 2 cut(s) 320, 675
BpuMI CCSGG 2 cut(s) 176, 177
BsaHI GRCGYC 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 68, 175, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 522
Bse1I ACTGG 3 cut(s) 415, 473, 657
Bse21I CCTNAGG 1 cut(s) 426
BseBI CCWGG 6 cut(s) 312, 326, 575, 900, 921, 939
BseDI CCNNGG 3 cut(s) 68, 175, 278
BseGI GGATG 3 cut(s) 410, 570, 880
BseLI CCNNNNNNNGG 2 cut(s) 325, 522
BseMII CTCAG 3 cut(s) 219, 440, 768
BseNI ACTGG 3 cut(s) 415, 473, 657
BseRI GAGGAG 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 4 cut(s) 318, 656, 903, 937
BsiHKAI GWGCWC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 215, 416
BslI CCNNNNNNNGG 2 cut(s) 325, 522
BsmAI GTCTC 2 cut(s) 82, 631
BsmFI GGGAC 2 cut(s) 215, 416
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 4 cut(s) 318, 656, 903, 937
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 3 cut(s) 389, 769, 814
BspACI CCGC 2 cut(s) 32, 699
BspANI GGCC 4 cut(s) 318, 656, 903, 937
BspCNI CTCAG 3 cut(s) 218, 439, 769
BspLI GGNNCC 5 cut(s) 231, 432, 492, 621, 828
BspPI GGATC 2 cut(s) 397, 764
BspTNI GGTCTC 1 cut(s) 82
BsrI ACTGG 3 cut(s) 415, 473, 657
BssECI CCNNGG 3 cut(s) 68, 175, 278
BssMI GATC 3 cut(s) 389, 769, 814
BssNI GRCGYC 1 cut(s) 148
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 6 cut(s) 312, 326, 575, 900, 921, 939
Bst4CI ACNGT 2 cut(s) 62, 245
Bst6I CTCTTC 1 cut(s) 864
BstACI GRCGYC 1 cut(s) 148
BstC8I GCNNGC 3 cut(s) 6, 893, 905
BstDEI CTNAG 4 cut(s) 205, 361, 426, 777
BstENI CCTNNNNNAGG 1 cut(s) 520
BstF5I GGATG 3 cut(s) 410, 570, 880
BstHHI GCGC 2 cut(s) 13, 846
BstKTI GATC 3 cut(s) 392, 772, 817
BstMAI GTCTC 2 cut(s) 82, 631
BstMBI GATC 3 cut(s) 389, 769, 814
BstMWI GCNNNNNNNGC 3 cut(s) 10, 38, 499
BstNI CCWGG 6 cut(s) 312, 326, 575, 900, 921, 939
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 8 cut(s) 174, 175, 310, 324, 573, 898, 919, 937
BstX2I RGATCY 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 899
BstYI RGATCY 1 cut(s) 389
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 4 cut(s) 318, 656, 903, 937
BtsCI GGATG 3 cut(s) 410, 570, 880
BtsIMutI CAGTG 1 cut(s) 664
Cac8I GCNNGC 3 cut(s) 6, 893, 905
CfoI GCGC 2 cut(s) 13, 846
Cfr13I GGNCC 5 cut(s) 229, 422, 430, 620, 935
Cfr9I CCCGGG 1 cut(s) 175
CseI GACGC 1 cut(s) 156
CsiI ACCWGGT 1 cut(s) 324
Csp6I GTAC 2 cut(s) 468, 639
CviAII CATG 2 cut(s) 565, 793
CviQI GTAC 2 cut(s) 468, 639
DdeI CTNAG 4 cut(s) 205, 361, 426, 777
DpnI GATC 3 cut(s) 391, 771, 816
DpnII GATC 3 cut(s) 389, 769, 814
DraI TTTAAA 1 cut(s) 837
EaeI YGGCCR 3 cut(s) 316, 654, 901
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
EciI GGCGGA 1 cut(s) 714
Ecl136II GAGCTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 4 cut(s) 229, 422, 430, 620
Eco53kI GAGCTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 426
Eco81I CCTNAGG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 520
EcoO109I RGGNCCY 3 cut(s) 422, 430, 620
EcoRI GAATTC 2 cut(s) 546, 799
EcoRII CCWGG 6 cut(s) 310, 324, 573, 898, 919, 937
EcoT14I CCWWGG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 2 cut(s) 568, 796
FaqI GGGAC 2 cut(s) 215, 416
FatI CATG 2 cut(s) 564, 792
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 3 cut(s) 397, 557, 887
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 3 cut(s) 117, 450, 756
GlaI GCGC 2 cut(s) 12, 845
GluI GCNGC 1 cut(s) 9
HaeIII GGCC 4 cut(s) 318, 656, 903, 937
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 156
HhaI GCGC 2 cut(s) 13, 846
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 2 cut(s) 568, 796
Hin6I GCGC 2 cut(s) 11, 844
HinP1I GCGC 2 cut(s) 11, 844
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 1 cut(s) 779
HpaII CCGG 1 cut(s) 176
HphI GGTGA 4 cut(s) 164, 505, 711, 821
Hpy166II GTNNAC 3 cut(s) 342, 470, 783
Hpy188I TCNGA 5 cut(s) 87, 139, 778, 805, 819
Hpy188III TCNNGA 3 cut(s) 45, 488, 692
Hpy8I GTNNAC 3 cut(s) 342, 470, 783
Hpy99I CGWCG 1 cut(s) 150
HpyCH4III ACNGT 2 cut(s) 62, 245
HpyCH4V TGCA 3 cut(s) 197, 221, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 38, 499
HpyF3I CTNAG 4 cut(s) 205, 361, 426, 777
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 2 cut(s) 568, 796
HspAI GCGC 2 cut(s) 11, 844
Kzo9I GATC 3 cut(s) 389, 769, 814
LmnI GCTCC 3 cut(s) 313, 490, 826
LweI GCATC 1 cut(s) 419
MabI ACCWGGT 1 cut(s) 324
MaeI CTAG 3 cut(s) 117, 450, 756
MaeIII GTNAC 6 cut(s) 74, 245, 263, 328, 475, 537
MalI GATC 3 cut(s) 391, 771, 816
MboI GATC 3 cut(s) 389, 769, 814
MboII GAAGA 3 cut(s) 680, 824, 881
MfeI CAATTG 1 cut(s) 353
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 3 cut(s) 318, 656, 903
MluCI AATT 6 cut(s) 353, 483, 546, 685, 799, 881
MluNI TGGCCA 3 cut(s) 318, 656, 903
MlyI GAGTC 1 cut(s) 788
Mox20I TGGCCA 3 cut(s) 318, 656, 903
MroXI GAANNNNTTC 1 cut(s) 509
MscI TGGCCA 3 cut(s) 318, 656, 903
MseI TTAA 2 cut(s) 15, 836
MslI CAYNNNNRTG 1 cut(s) 634
Msp20I TGGCCA 3 cut(s) 318, 656, 903
MspA1I CMGCKG 2 cut(s) 8, 209
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 8 cut(s) 176, 177, 312, 326, 575, 900, 921, 939
MunI CAATTG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 6 cut(s) 312, 326, 575, 900, 921, 939
MwoI GCNNNNNNNGC 3 cut(s) 10, 38, 499
NciI CCSGG 2 cut(s) 176, 177
NdeII GATC 3 cut(s) 389, 769, 814
NlaIII CATG 2 cut(s) 568, 796
NlaIV GGNNCC 5 cut(s) 231, 432, 492, 621, 828
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 2 cut(s) 245, 537
NspI RCATGY 1 cut(s) 796
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 509
PfoI TCCNGGA 1 cut(s) 573
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
PpuMI RGGWCCY 3 cut(s) 422, 430, 620
Psp124BI GAGCTC 1 cut(s) 218
Psp5II RGGWCCY 3 cut(s) 422, 430, 620
Psp6I CCWGG 6 cut(s) 310, 324, 573, 898, 919, 937
PspGI CCWGG 6 cut(s) 310, 324, 573, 898, 919, 937
PspN4I GGNNCC 5 cut(s) 231, 432, 492, 621, 828
PspPI GGNCC 5 cut(s) 229, 422, 430, 620, 935
PspPPI RGGWCCY 3 cut(s) 422, 430, 620
PsuI RGATCY 1 cut(s) 389
PvuII CAGCTG 2 cut(s) 8, 209
RsaI GTAC 2 cut(s) 469, 640
RsaNI GTAC 2 cut(s) 468, 639
RseI CAYNNNNRTG 1 cut(s) 634
SacI GAGCTC 1 cut(s) 218
SaqAI TTAA 2 cut(s) 15, 836
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 3 cut(s) 389, 769, 814
Sau96I GGNCC 5 cut(s) 229, 422, 430, 620, 935
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 8 cut(s) 176, 177, 312, 326, 575, 900, 921, 939
SduI GDGCHC 1 cut(s) 218
SexAI ACCWGGT 1 cut(s) 324
SfaNI GCATC 1 cut(s) 419
SinI GGWCC 4 cut(s) 229, 422, 430, 620
SmaI CCCGGG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 634
SmlI CTYRAG 2 cut(s) 299, 690
SmoI CTYRAG 2 cut(s) 299, 690
Sse9I AATT 6 cut(s) 353, 483, 546, 685, 799, 881
SsiI CCGC 2 cut(s) 32, 699
SspMI CTAG 3 cut(s) 117, 450, 756
SstI GAGCTC 1 cut(s) 218
StyD4I CCNGG 8 cut(s) 174, 175, 310, 324, 573, 898, 919, 937
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 62, 245
TaqI TCGA 3 cut(s) 188, 680, 925
TasI AATT 6 cut(s) 353, 483, 546, 685, 799, 881
TatI WGTACW 1 cut(s) 638
Tru1I TTAA 2 cut(s) 15, 836
Tru9I TTAA 2 cut(s) 15, 836
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 2 cut(s) 245, 537
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 2 cut(s) 245, 537
TspDTI ATGAA 2 cut(s) 156, 882
TspGWI ACGGA 2 cut(s) 144, 680
TspMI CCCGGG 1 cut(s) 175
TspRI CASTG 1 cut(s) 664
VpaK11BI GGWCC 4 cut(s) 229, 422, 430, 620
XagI CCTNNNNNAGG 1 cut(s) 520
XapI RAATTY 2 cut(s) 546, 799
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmaI CCCGGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 3 cut(s) 117, 450, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.