MD15G1169900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
13098018 .. 13100717
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1169900.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGCCTAGGCCGGGCCCGAGACCGTATGAGTGTGTCCGGCGAGCTTGGCATAGCGATAGGCACCAACCCATGAGAGGTTCCATCATTCAGCAGATTTTCAGGGTCGTCAATGAGGTTCACAGCTCCGTAACGAAGAAGAACAAGGAATGGCAGGAGAAGCTGCCTTTGGTGGTTTTCAGAGCAGAGGAAATTATGTATTCAAAAGCCAATTCTGAGGCCGAGTACATGAATCTTGACACGCTATGGGATAGAGCAAATGACGCCGTTAACACAATTATCCGGCGAGATGAGGGCACTGAAACCGGGGAGCTTTTGCCGCCTTGCGTTGAAGCTGCCCTTAATCTGGGTTGCACTCCAGTAAGAGCTTCGAGAAGCCAACGGAACAGTAATCCGAGGAGTTACCTCGCTCCAAGAGCACAAGAGCCCGCTCCTACGCCTGCTAGGGTTTTGGATAAAGCTACTGATGAACGGCACCCTCAGTTTTCTCCTCATCACTCTAGCAATCAATTGAACTTTGCAAAAGCCTCAAATGTGAACTCTGCACTTTCGGTCCCAGAATCTTACAGCCGCATGAGCCAGAGTACTAACCTCGCTAGCCCTCGGAATTACCCATTTTCACTTGAGAATGTTCCTGCTGGCCATAACCAGTTAGCAACAATGTCAACCAATAACCCCTCGAACTCGGGTTCAGTATATCCATTATATTACGGAACTCACCATCAACCTGAAGAGTTCCAGGTCGGTCCTCAGGTCCCAGAAAGTACATATTCTAGGACCATACATGTCGGCACACCAATTGTTACATCAGTGATGGAACCTACCAAGCAGAACCTTTTCTCCTCCCAAGGTGCTGAAAATGTGTCACACAGATTCACAGAAGTCATGGACACCCAGGAGAAGCCACGGGAAATTGAATGTGATTTATCGTTGACGTTGGGTCCTGTTGTCCACCCATGCACTCGAAGAAGCTTGGCCAGTGGAATGGAAGATATTGGGTCGAGCAATTCTCAAGACGGGGGAAAGTTAAATGATTTTTCACCATTGAGAAGCAAGGAAATCTGTTTCTTTCCCACAAAGACTGCTTATGATCGCTTTGAGTCCACTTCCAGTATGTGGAATTCAGAGAGCGGTCGGAGTTCTGAGGCAACTGTAAGGAAGCGCAAGGCACCATTTAGTAGCAATGAGGAGGATAGGCAATATTGCTGGCAACCAGATGTCGTTCCCAACAGGTTCACTGGTCGAACTACAGGGCCTGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

421

Amino Acids

47.12

Weight (kDa)

7.19

Isoelectric Point (pI)

62.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 60, 471, 1165
AccB7I CCANNNNNTGG 1 cut(s) 1113
AccBSI CCGCTC 2 cut(s) 428, 1128
AciI CCGC 4 cut(s) 317, 426, 568, 1128
AcoI YGGCCR 2 cut(s) 637, 972
AcsI RAATTY 1 cut(s) 1117
AcuI CTGAAG 1 cut(s) 747
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 3 cut(s) 224, 583, 763
AfiI CCNNNNNNNGG 4 cut(s) 11, 74, 343, 1113
AflIII ACRYGT 1 cut(s) 781
AgsI TTSAA 4 cut(s) 201, 329, 511, 914
AhdI GACNNNNNGTC 1 cut(s) 936
AjnI CCWGG 3 cut(s) 735, 891, 1252
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AloI GAACNNNNNNTCC 2 cut(s) 821, 853
AluBI AGCT 8 cut(s) 44, 123, 160, 310, 332, 365, 458, 969
AluI AGCT 8 cut(s) 44, 123, 160, 310, 332, 365, 458, 969
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 1253
Ama87I CYCGRG 2 cut(s) 16, 682
AoxI GGCC 6 cut(s) 8, 13, 216, 637, 972, 1250
ApaI GGGCCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 160, 332
ApoI RAATTY 1 cut(s) 1117
Asp700I GAANNNNTTC 1 cut(s) 833
AspA2I CCTAGG 1 cut(s) 5
AspLEI GCGC 1 cut(s) 1161
AspS9I GGNCC 8 cut(s) 13, 14, 550, 743, 751, 774, 938, 1250
AsuC2I CCSGG 2 cut(s) 12, 304
AsuHPI GGTGA 2 cut(s) 707, 1029
AsuNHI GCTAGC 1 cut(s) 593
AvaI CYCGRG 2 cut(s) 16, 682
AvaII GGWCC 5 cut(s) 550, 743, 751, 774, 938
AvrII CCTAGG 1 cut(s) 5
AxyI CCTNAGG 1 cut(s) 747
BaeGI GKGCMC 2 cut(s) 17, 296
BalI TGGCCA 2 cut(s) 639, 974
BanI GGYRCC 3 cut(s) 60, 471, 1165
BanII GRGCYC 2 cut(s) 17, 426
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 2 cut(s) 147, 319
BccI CCATC 3 cut(s) 89, 726, 805
BceAI ACGGC 2 cut(s) 248, 485
BciT130I CCWGG 3 cut(s) 737, 893, 1254
BcnI CCSGG 2 cut(s) 12, 304
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 5 cut(s) 6, 441, 498, 594, 771
BfmI CTRYAG 1 cut(s) 1245
BisI GCNGC 4 cut(s) 161, 317, 333, 568
BlnI CCTAGG 1 cut(s) 5
BlsI GCNGC 4 cut(s) 162, 318, 334, 569
BmcAI AGTACT 1 cut(s) 583
Bme1390I CCNGG 5 cut(s) 12, 304, 737, 893, 1254
Bme18I GGWCC 5 cut(s) 550, 743, 751, 774, 938
BmeRI GACNNNNNGTC 1 cut(s) 936
BmeT110I CYCGRG 2 cut(s) 16, 682
BmgT120I GGNCC 8 cut(s) 13, 14, 550, 743, 751, 774, 938, 1250
BmiI GGNNCC 9 cut(s) 15, 62, 79, 473, 552, 753, 816, 939, 1167
BmrFI CCNGG 5 cut(s) 12, 304, 737, 893, 1254
BmtI GCTAGC 1 cut(s) 597
BplI GAGNNNNNCTC 2 cut(s) 991, 1023
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 641, 993
BpuMI CCSGG 2 cut(s) 12, 304
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 7 cut(s) 5, 303, 392, 599, 844, 891, 902
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 74, 343, 1113
Bse1I ACTGG 5 cut(s) 356, 646, 975, 1107, 1240
Bse21I CCTNAGG 1 cut(s) 747
Bse3DI GCAATG 1 cut(s) 1186
BseBI CCWGG 3 cut(s) 737, 893, 1254
BseDI CCNNGG 7 cut(s) 5, 303, 392, 599, 844, 891, 902
BseLI CCNNNNNNNGG 4 cut(s) 11, 74, 343, 1113
BseMI GCAATG 1 cut(s) 1186
BseMII CTCAG 4 cut(s) 204, 491, 761, 1131
BseNI ACTGG 5 cut(s) 356, 646, 975, 1107, 1240
BseRI GAGGAG 4 cut(s) 409, 477, 829, 1199
BseSI GKGCMC 2 cut(s) 17, 296
BseXI GCAGC 2 cut(s) 147, 319
BsgI GTGCAG 1 cut(s) 525
Bsh1285I CGRYCG 1 cut(s) 1132
BshFI GGCC 6 cut(s) 10, 15, 218, 639, 974, 1252
BshNI GGYRCC 3 cut(s) 60, 471, 1165
BsiEI CGRYCG 1 cut(s) 1132
BsiHKAI GWGCWC 1 cut(s) 418
BsiHKCI CYCGRG 2 cut(s) 16, 682
BsiSI CCGG 4 cut(s) 11, 37, 280, 303
BslFI GGGAC 2 cut(s) 536, 737
BslI CCNNNNNNNGG 4 cut(s) 11, 74, 343, 1113
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 536, 737
BsnI GGCC 6 cut(s) 10, 15, 218, 639, 974, 1252
Bso31I GGTCTC 1 cut(s) 13
BsoBI CYCGRG 2 cut(s) 16, 682
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 4 cut(s) 17, 296, 418, 426
Bsp143I GATC 1 cut(s) 1087
BspACI CCGC 4 cut(s) 317, 426, 568, 1128
BspANI GGCC 6 cut(s) 10, 15, 218, 639, 974, 1252
BspCNI CTCAG 4 cut(s) 205, 490, 760, 1132
BspLI GGNNCC 9 cut(s) 15, 62, 79, 473, 552, 753, 816, 939, 1167
BspOI GCTAGC 1 cut(s) 597
BspT107I GGYRCC 3 cut(s) 60, 471, 1165
BspTNI GGTCTC 1 cut(s) 13
BsrBI CCGCTC 2 cut(s) 428, 1128
BsrDI GCAATG 1 cut(s) 1186
BsrI ACTGG 5 cut(s) 356, 646, 975, 1107, 1240
BssECI CCNNGG 7 cut(s) 5, 303, 392, 599, 844, 891, 902
BssMI GATC 1 cut(s) 1087
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 5, 844
Bst2UI CCWGG 3 cut(s) 737, 893, 1254
Bst4CI ACNGT 3 cut(s) 24, 386, 1150
Bst6I CTCTTC 1 cut(s) 723
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 6 cut(s) 42, 426, 438, 595, 637, 1205
BstDEI CTNAG 4 cut(s) 213, 477, 747, 1140
BstDSI CCRYGG 1 cut(s) 902
BstHHI GCGC 1 cut(s) 1161
BstKTI GATC 1 cut(s) 1090
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 1087
BstMCI CGRYCG 1 cut(s) 1132
BstMWI GCNNNNNNNGC 6 cut(s) 46, 157, 260, 316, 413, 573
BstNI CCWGG 3 cut(s) 737, 893, 1254
BstNSI RCATGY 1 cut(s) 785
BstSCI CCNGG 5 cut(s) 10, 302, 735, 891, 1252
BstSFI CTRYAG 1 cut(s) 1245
BstSLI GKGCMC 2 cut(s) 17, 296
BstV1I GCAGC 2 cut(s) 147, 319
BstXI CCANNNNNNTGG 1 cut(s) 982
Bsu36I CCTNAGG 1 cut(s) 747
BsuRI GGCC 6 cut(s) 10, 15, 218, 639, 974, 1252
BtgI CCRYGG 1 cut(s) 902
BtsIMutI CAGTG 4 cut(s) 294, 813, 982, 1233
Cac8I GCNNGC 6 cut(s) 42, 426, 438, 595, 637, 1205
CaiI CAGNNNCTG 1 cut(s) 1253
CfoI GCGC 1 cut(s) 1161
Cfr13I GGNCC 8 cut(s) 13, 14, 550, 743, 751, 774, 938, 1250
CseI GACGC 1 cut(s) 269
Csp6I GTAC 3 cut(s) 223, 582, 762
CviAII CATG 6 cut(s) 70, 226, 571, 782, 883, 954
CviQI GTAC 3 cut(s) 223, 582, 762
DdeI CTNAG 4 cut(s) 213, 477, 747, 1140
DpnI GATC 1 cut(s) 1089
DpnII GATC 1 cut(s) 1087
DriI GACNNNNNGTC 1 cut(s) 936
EaeI YGGCCR 2 cut(s) 637, 972
Eam1104I CTCTTC 1 cut(s) 723
Eam1105I GACNNNNNGTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 723
Eco130I CCWWGG 2 cut(s) 5, 844
Eco24I GRGCYC 2 cut(s) 17, 426
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 5 cut(s) 550, 743, 751, 774, 938
Eco57I CTGAAG 1 cut(s) 747
Eco81I CCTNAGG 1 cut(s) 747
Eco88I CYCGRG 2 cut(s) 16, 682
EcoO109I RGGNCCY 3 cut(s) 751, 938, 1250
EcoRI GAATTC 1 cut(s) 1117
EcoRII CCWGG 3 cut(s) 735, 891, 1252
EcoT14I CCWWGG 2 cut(s) 5, 844
EcoT38I GRGCYC 2 cut(s) 17, 426
ErhI CCWWGG 2 cut(s) 5, 844
FaeI CATG 6 cut(s) 73, 229, 574, 785, 886, 957
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 2 cut(s) 536, 737
FatI CATG 6 cut(s) 69, 225, 570, 781, 882, 953
FauI CCCGC 1 cut(s) 433
Fnu4HI GCNGC 4 cut(s) 161, 317, 333, 568
FriOI GRGCYC 2 cut(s) 17, 426
Fsp4HI GCNGC 4 cut(s) 161, 317, 333, 568
FspBI CTAG 5 cut(s) 6, 441, 498, 594, 771
GlaI GCGC 1 cut(s) 1160
GluI GCNGC 4 cut(s) 161, 317, 333, 568
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 6 cut(s) 10, 15, 218, 639, 974, 1252
HapII CCGG 4 cut(s) 11, 37, 280, 303
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 1161
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 6 cut(s) 73, 229, 574, 785, 886, 957
Hin6I GCGC 1 cut(s) 1159
HinP1I GCGC 1 cut(s) 1159
HincII GTYRAC 3 cut(s) 268, 663, 930
HindII GTYRAC 3 cut(s) 268, 663, 930
HindIII AAGCTT 1 cut(s) 967
HinfI GANTC 4 cut(s) 229, 557, 870, 1097
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 4 cut(s) 11, 37, 280, 303
HphI GGTGA 2 cut(s) 707, 1029
Hpy166II GTNNAC 8 cut(s) 118, 268, 535, 663, 930, 949, 1101, 1233
Hpy188I TCNGA 7 cut(s) 179, 214, 393, 603, 1123, 1134, 1141
Hpy188III TCNNGA 3 cut(s) 233, 369, 1010
Hpy8I GTNNAC 8 cut(s) 118, 268, 535, 663, 930, 949, 1101, 1233
HpyCH4III ACNGT 3 cut(s) 24, 386, 1150
HpyCH4IV ACGT 1 cut(s) 932
HpyCH4V TGCA 4 cut(s) 351, 518, 542, 957
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 157, 260, 316, 413, 573
HpyF3I CTNAG 4 cut(s) 213, 477, 747, 1140
HpySE526I ACGT 1 cut(s) 932
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 6 cut(s) 73, 229, 574, 785, 886, 957
HspAI GCGC 1 cut(s) 1159
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 1 cut(s) 1087
LmnI GCTCC 4 cut(s) 128, 307, 412, 433
Lsp1109I GCAGC 2 cut(s) 147, 319
MaeI CTAG 5 cut(s) 6, 441, 498, 594, 771
MaeII ACGT 1 cut(s) 932
MaeIII GTNAC 4 cut(s) 127, 398, 799, 861
MalI GATC 1 cut(s) 1089
MbiI CCGCTC 2 cut(s) 428, 1128
MboI GATC 1 cut(s) 1087
MboII GAAGA 5 cut(s) 145, 148, 740, 975, 998
MfeI CAATTG 2 cut(s) 506, 795
MhlI GDGCHC 4 cut(s) 17, 296, 418, 426
MlsI TGGCCA 2 cut(s) 639, 974
MluCI AATT 9 cut(s) 189, 208, 273, 506, 604, 795, 909, 1003, 1117
MluNI TGGCCA 2 cut(s) 639, 974
MlyI GAGTC 1 cut(s) 1106
MmeI TCCRAC 1 cut(s) 1112
Mox20I TGGCCA 2 cut(s) 639, 974
MroXI GAANNNNTTC 1 cut(s) 833
MscI TGGCCA 2 cut(s) 639, 974
MseI TTAA 3 cut(s) 267, 339, 1025
Msp20I TGGCCA 2 cut(s) 639, 974
MspI CCGG 4 cut(s) 11, 37, 280, 303
MspR9I CCNGG 5 cut(s) 12, 304, 737, 893, 1254
MunI CAATTG 2 cut(s) 506, 795
MvaI CCWGG 3 cut(s) 737, 893, 1254
MwoI GCNNNNNNNGC 6 cut(s) 46, 157, 260, 316, 413, 573
NciI CCSGG 2 cut(s) 12, 304
NdeII GATC 1 cut(s) 1087
NheI GCTAGC 1 cut(s) 593
NlaIII CATG 6 cut(s) 73, 229, 574, 785, 886, 957
NlaIV GGNNCC 9 cut(s) 15, 62, 79, 473, 552, 753, 816, 939, 1167
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 861
NspI RCATGY 1 cut(s) 785
PciI ACATGT 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 3 cut(s) 229, 557, 870
PflMI CCANNNNNTGG 1 cut(s) 1113
PkrI GCNGC 4 cut(s) 162, 318, 334, 569
PleI GAGTC 1 cut(s) 1105
PpsI GAGTC 1 cut(s) 1105
PpuMI RGGWCCY 2 cut(s) 751, 938
PscI ACATGT 1 cut(s) 781
Psp5II RGGWCCY 2 cut(s) 751, 938
Psp6I CCWGG 3 cut(s) 735, 891, 1252
PspGI CCWGG 3 cut(s) 735, 891, 1252
PspN4I GGNNCC 9 cut(s) 15, 62, 79, 473, 552, 753, 816, 939, 1167
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 8 cut(s) 13, 14, 550, 743, 751, 774, 938, 1250
PspPPI RGGWCCY 2 cut(s) 751, 938
PstNI CAGNNNCTG 1 cut(s) 1253
RsaI GTAC 3 cut(s) 224, 583, 763
RsaNI GTAC 3 cut(s) 223, 582, 762
SaqAI TTAA 3 cut(s) 267, 339, 1025
SatI GCNGC 4 cut(s) 161, 317, 333, 568
Sau3AI GATC 1 cut(s) 1087
Sau96I GGNCC 8 cut(s) 13, 14, 550, 743, 751, 774, 938, 1250
ScaI AGTACT 1 cut(s) 583
SchI GAGTC 1 cut(s) 1106
ScrFI CCNGG 5 cut(s) 12, 304, 737, 893, 1254
SduI GDGCHC 4 cut(s) 17, 296, 418, 426
SfcI CTRYAG 1 cut(s) 1245
SinI GGWCC 5 cut(s) 550, 743, 751, 774, 938
SmlI CTYRAG 2 cut(s) 620, 1008
SmoI CTYRAG 2 cut(s) 620, 1008
Sse9I AATT 9 cut(s) 189, 208, 273, 506, 604, 795, 909, 1003, 1117
SsiI CCGC 4 cut(s) 317, 426, 568, 1128
SspI AATATT 1 cut(s) 1199
SspMI CTAG 5 cut(s) 6, 441, 498, 594, 771
StyD4I CCNGG 5 cut(s) 10, 302, 735, 891, 1252
StyI CCWWGG 2 cut(s) 5, 844
TaaI ACNGT 3 cut(s) 24, 386, 1150
TaiI ACGT 1 cut(s) 935
TaqI TCGA 5 cut(s) 368, 677, 961, 998, 1240
TaqII GACCGA 2 cut(s) 538, 731
TasI AATT 9 cut(s) 189, 208, 273, 506, 604, 795, 909, 1003, 1117
TatI WGTACW 3 cut(s) 222, 581, 761
TauI GCSGC 2 cut(s) 319, 570
TfiI GAWTC 3 cut(s) 229, 557, 870
Tru1I TTAA 3 cut(s) 267, 339, 1025
Tru9I TTAA 3 cut(s) 267, 339, 1025
TscAI CASTG 4 cut(s) 301, 813, 982, 1240
TseFI GTSAC 1 cut(s) 861
TseI GCWGC 2 cut(s) 160, 332
Tsp45I GTSAC 1 cut(s) 861
TspDTI ATGAA 2 cut(s) 242, 480
TspGWI ACGGA 3 cut(s) 115, 394, 723
TspRI CASTG 4 cut(s) 301, 813, 982, 1240
Van91I CCANNNNNTGG 1 cut(s) 1113
VpaK11BI GGWCC 5 cut(s) 550, 743, 751, 774, 938
XapI RAATTY 1 cut(s) 1117
XceI RCATGY 1 cut(s) 785
XmaJI CCTAGG 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 5 cut(s) 6, 441, 498, 594, 771
ZrmI AGTACT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.