AT3G24170

Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
8729354 .. 8734624
5271 bp
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UTR
Exon/CDS
Intron
AT3G24170.1

Sequence Viewer

Length: 1500 bp
ATGGCGAGGAAGATGCTTGTTGATGGTGAGATTGATAAGGTGGCGGCTGATGAAGCCAACGCGACGCACTATGATTTTGATTTGTTTGTCATCGGTGCCGGGAGTGGCGGTGTTCGTGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAGGTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGAGGCGTTGGTGGAACCTGTGTTATCCGTGGTTGTGTTCCTAAAAAGATTCTCGTCTATGGAGCTACTTACGGTGGTGAACTTGAGGATGCTAAAAATTATGGGTGGGAAATAAATGAGAAAGTCGACTTCACATGGAAGAAGCTTTTGCAAAAGAAGACTGATGAGATACTAAGACTGAATAATATCTACAAGCGGTTATTGGCAAATGCTGCGGTGAAATTGTATGAAGGTGAAGGAAGAGTAGTTGGTCCCAACGAAGTGGAGGTGAGACAAATAGATGGCACAAAAATAAGTTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACATGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAGCGTGCTATAGTGCTTGGAGGAGGGTATATTGCTGTGGAGTTTGCATCAATATGGCGTGGAATGGGTGCTACTGTAGATTTATTCTTCAGGAAGGAACTTCCGCTAAGGGGTTTTGATGACGAAATGAGGGCACTAGTTGCTAGAAATCTTGAAGGAAGGGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAGTTGACAAAAACAGACCAGGGGATCAAAGTCATATCGTCCCATGGGGAGGAATTCGTGGCAGATGTCGTCCTATTTGCTACTGGCAGAAGTCCTAATACCAAAAGATTGAATTTAGAAGCTGTTGGTGTTGAACTTGATCAGGCTGGAGCTGTGAAGGTTGACGAGTATTCACGAACTAATATACCTAGCATATGGGCTGTAGGAGATGCCACAAACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCGAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTGCATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACAAGCAACCGGTGATATTCTGGTCTTCACCTCAGGCTTTAATCCAATGAAGAACACCATTTCTGGACGCCAGGAAAAGACATTGATGAAGCTAATAGTTGATGAGAAGAGTGATAAGGTTATTGGAGCATCCATGTGCGGTCCTGATGCAGCTGAGATCATGCAGGGGATTGCAATTGCGCTCAAGTGTGGAGCAACCAAAGCACAATTTGATAGCACGGTTGGGATACATCCATCTTCTGCAGAGGAATTTGTGACAATGCGCAGTGTGACCAGACGCATTGCCCACAAACCCAAACCTAAGACAAATCTATGA

Protein Analysis

499

Amino Acids

53.87

Weight (kDa)

6.36

Isoelectric Point (pI)

26.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 26 - 353 7.4e-69 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 158 - 337 3.3e-13 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 205 - 278 4.7e-17 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim PF02852 374 - 482 2.1e-30 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1448
AccB1I GGYRCC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 62
AciI CCGC 7 cut(s) 44, 108, 394, 413, 501, 713, 1323
AclWI GGATC 1 cut(s) 836
AcsI RAATTY 4 cut(s) 602, 857, 916, 1433
AcuI CTGAAG 1 cut(s) 682
AcyI GRCGYC 1 cut(s) 1252
AfiI CCNNNNNNNGG 2 cut(s) 719, 853
AgeI ACCGGT 1 cut(s) 1193
AgsI TTSAA 3 cut(s) 764, 916, 938
AhlI ACTAGT 1 cut(s) 745
AjnI CCWGG 3 cut(s) 553, 822, 1254
Alw26I GTCTC 2 cut(s) 463, 1166
AlwI GGATC 1 cut(s) 836
AoxI GGCC 1 cut(s) 1056
ApeKI GCWGC 3 cut(s) 119, 410, 1334
ApoI RAATTY 4 cut(s) 602, 857, 916, 1433
AsiGI ACCGGT 1 cut(s) 1193
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 4 cut(s) 146, 538, 1366, 1449
AspS9I GGNCC 2 cut(s) 449, 1325
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 8 cut(s) 38, 167, 287, 427, 443, 478, 1204, 1208
AvaII GGWCC 2 cut(s) 449, 1325
AxyI CCTNAGG 1 cut(s) 1216
BaeGI GKGCMC 1 cut(s) 745
BanI GGYRCC 1 cut(s) 95
BarI GAAGNNNNNNTAC 2 cut(s) 886, 918
BbsI GAAGAC 2 cut(s) 362, 1201
BbvI GCAGC 3 cut(s) 106, 397, 1346
BccI CCATC 3 cut(s) 17, 473, 1426
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 3 cut(s) 555, 824, 1256
BciVI GTATCC 1 cut(s) 1404
BclI TGATCA 1 cut(s) 943
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 463, 1166
BcuI ACTAGT 1 cut(s) 745
BfaI CTAG 5 cut(s) 123, 746, 753, 993, 1148
BfmI CTRYAG 5 cut(s) 618, 684, 1005, 1152, 1425
BfoI RGCGCY 1 cut(s) 147
BfuI GTATCC 1 cut(s) 1404
BisI GCNGC 4 cut(s) 45, 120, 411, 1335
BlsI GCNGC 4 cut(s) 46, 121, 412, 1336
Bme1390I CCNGG 4 cut(s) 100, 555, 824, 1256
Bme18I GGWCC 2 cut(s) 449, 1325
BmgT120I GGNCC 2 cut(s) 449, 1325
BmiI GGNNCC 3 cut(s) 97, 214, 451
BmrFI CCNGG 4 cut(s) 100, 555, 824, 1256
BmsI GCATC 7 cut(s) 3, 277, 665, 793, 1003, 1321, 1322
BpiI GAAGAC 2 cut(s) 362, 1201
BpmI CTGGAG 1 cut(s) 972
Bpu10I CCTNAGC 2 cut(s) 147, 716
BpuEI CTTGAG 2 cut(s) 302, 1352
BpuMI CCSGG 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 1252
BsaI GGTCTC 1 cut(s) 1166
BsaJI CCNNGG 3 cut(s) 226, 823, 847
BsaWI WCCGGW 1 cut(s) 1193
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 853
Bse118I RCCGGY 1 cut(s) 1193
Bse1I ACTGG 2 cut(s) 529, 892
Bse21I CCTNAGG 1 cut(s) 1216
Bse3DI GCAATG 2 cut(s) 1120, 1464
BseBI CCWGG 3 cut(s) 555, 824, 1256
BseDI CCNNGG 3 cut(s) 226, 823, 847
BseGI GGATG 4 cut(s) 292, 784, 1313, 1414
BseLI CCNNNNNNNGG 2 cut(s) 719, 853
BseMI GCAATG 2 cut(s) 1120, 1464
BseMII CTCAG 5 cut(s) 180, 818, 1177, 1230, 1329
BseNI ACTGG 2 cut(s) 529, 892
BseRI GAGGAG 2 cut(s) 206, 645
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 3 cut(s) 106, 397, 1346
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 1058
BshNI GGYRCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 1193
BsiSI CCGG 2 cut(s) 99, 1194
BslFI GGGAC 2 cut(s) 435, 829
BslI CCNNNNNNNGG 2 cut(s) 719, 853
BsmAI GTCTC 2 cut(s) 463, 1166
BsmFI GGGAC 2 cut(s) 435, 829
BsnI GGCC 1 cut(s) 1058
Bso31I GGTCTC 1 cut(s) 1166
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 3 cut(s) 828, 943, 1341
Bsp19I CCATGG 1 cut(s) 847
BspACI CCGC 7 cut(s) 44, 108, 394, 413, 501, 713, 1323
BspANI GGCC 1 cut(s) 1058
BspCNI CTCAG 5 cut(s) 181, 817, 1176, 1229, 1330
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 97, 214, 451
BspMAI CTGCAG 1 cut(s) 1429
BspPI GGATC 1 cut(s) 836
BspT107I GGYRCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 1166
BsrDI GCAATG 2 cut(s) 1120, 1464
BsrFI RCCGGY 1 cut(s) 1193
BsrI ACTGG 2 cut(s) 529, 892
BssAI RCCGGY 1 cut(s) 1193
BssECI CCNNGG 3 cut(s) 226, 823, 847
BssMI GATC 3 cut(s) 828, 943, 1341
BssNI GRCGYC 1 cut(s) 1252
BssT1I CCWWGG 1 cut(s) 847
Bst2UI CCWGG 3 cut(s) 555, 824, 1256
Bst4CI ACNGT 3 cut(s) 272, 685, 1405
Bst6I CTCTTC 2 cut(s) 433, 1286
BstACI GRCGYC 1 cut(s) 1252
BstAPI GCANNNNNTGC 2 cut(s) 410, 749
BstC8I GCNNGC 2 cut(s) 567, 615
BstDEI CTNAG 9 cut(s) 147, 189, 371, 716, 804, 1163, 1216, 1338, 1485
BstDSI CCRYGG 2 cut(s) 226, 847
BstF5I GGATG 4 cut(s) 292, 784, 1313, 1414
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 4 cut(s) 146, 538, 1366, 1449
BstKTI GATC 3 cut(s) 831, 946, 1344
BstMAI GTCTC 2 cut(s) 463, 1166
BstMBI GATC 3 cut(s) 828, 943, 1341
BstMWI GCNNNNNNNGC 5 cut(s) 53, 410, 749, 1076, 1385
BstNI CCWGG 3 cut(s) 555, 824, 1256
BstSCI CCNGG 4 cut(s) 98, 553, 822, 1254
BstSFI CTRYAG 5 cut(s) 618, 684, 1005, 1152, 1425
BstSLI GKGCMC 1 cut(s) 745
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 3 cut(s) 106, 397, 1346
BstV2I GAAGAC 2 cut(s) 362, 1201
BstXI CCANNNNNNTGG 1 cut(s) 460
Bsu36I CCTNAGG 1 cut(s) 1216
BsuI GTATCC 1 cut(s) 1404
BsuRI GGCC 1 cut(s) 1058
BtgI CCRYGG 2 cut(s) 226, 847
BtsCI GGATG 4 cut(s) 292, 784, 1313, 1414
BtsI GCAGTG 2 cut(s) 1074, 1456
BtsIMutI CAGTG 3 cut(s) 522, 1074, 1456
Cac8I GCNNGC 2 cut(s) 567, 615
CfoI GCGC 4 cut(s) 146, 538, 1366, 1449
Cfr10I RCCGGY 1 cut(s) 1193
Cfr13I GGNCC 2 cut(s) 449, 1325
CseI GACGC 3 cut(s) 73, 1260, 1470
CspAI ACCGGT 1 cut(s) 1193
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 6 cut(s) 140, 333, 560, 848, 1318, 1345
DdeI CTNAG 9 cut(s) 147, 189, 371, 716, 804, 1163, 1216, 1338, 1485
DpnI GATC 3 cut(s) 830, 945, 1343
DpnII GATC 3 cut(s) 828, 943, 1341
Eam1104I CTCTTC 2 cut(s) 433, 1286
EarI CTCTTC 2 cut(s) 433, 1286
Eco130I CCWWGG 1 cut(s) 847
Eco31I GGTCTC 1 cut(s) 1166
Eco47I GGWCC 2 cut(s) 449, 1325
Eco57I CTGAAG 1 cut(s) 682
Eco81I CCTNAGG 1 cut(s) 1216
EcoRI GAATTC 1 cut(s) 857
EcoRII CCWGG 3 cut(s) 553, 822, 1254
EcoT14I CCWWGG 1 cut(s) 847
ErhI CCWWGG 1 cut(s) 847
FaeI CATG 6 cut(s) 143, 336, 563, 851, 1321, 1348
FaqI GGGAC 2 cut(s) 435, 829
FatI CATG 6 cut(s) 139, 332, 559, 847, 1317, 1344
FauNDI CATATG 1 cut(s) 998
FbaI TGATCA 1 cut(s) 943
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 4 cut(s) 45, 120, 411, 1335
FokI GGATG 4 cut(s) 299, 771, 1300, 1401
Fsp4HI GCNGC 4 cut(s) 45, 120, 411, 1335
FspBI CTAG 5 cut(s) 123, 746, 753, 993, 1148
FspI TGCGCA 1 cut(s) 1448
GlaI GCGC 4 cut(s) 145, 537, 1365, 1448
GluI GCNGC 4 cut(s) 45, 120, 411, 1335
GsuI CTGGAG 1 cut(s) 972
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 1 cut(s) 1058
HapII CCGG 2 cut(s) 99, 1194
HgaI GACGC 3 cut(s) 73, 1260, 1470
HhaI GCGC 4 cut(s) 146, 538, 1366, 1449
Hin1I GRCGYC 1 cut(s) 1252
Hin1II CATG 6 cut(s) 143, 336, 563, 851, 1321, 1348
Hin6I GCGC 4 cut(s) 144, 536, 1364, 1447
HinP1I GCGC 4 cut(s) 144, 536, 1364, 1447
HincII GTYRAC 3 cut(s) 325, 810, 967
HindII GTYRAC 3 cut(s) 325, 810, 967
HindIII AAGCTT 2 cut(s) 341, 585
HinfI GANTC 2 cut(s) 247, 802
HpaII CCGG 2 cut(s) 99, 1194
HphI GGTGA 8 cut(s) 38, 167, 287, 427, 443, 478, 1204, 1208
Hpy166II GTNNAC 4 cut(s) 278, 325, 810, 967
Hpy188I TCNGA 2 cut(s) 190, 580
Hpy188III TCNNGA 5 cut(s) 700, 761, 978, 1248, 1328
Hpy8I GTNNAC 4 cut(s) 278, 325, 810, 967
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 6 cut(s) 422, 428, 697, 758, 762, 955
HpyCH4III ACNGT 3 cut(s) 272, 685, 1405
HpyCH4V TGCA 8 cut(s) 349, 656, 784, 1137, 1334, 1348, 1358, 1427
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 410, 749, 1076, 1385
HpyF3I CTNAG 9 cut(s) 147, 189, 371, 716, 804, 1163, 1216, 1338, 1485
Hsp92I GRCGYC 1 cut(s) 1252
Hsp92II CATG 6 cut(s) 143, 336, 563, 851, 1321, 1348
HspAI GCGC 4 cut(s) 144, 536, 1364, 1447
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 3 cut(s) 828, 943, 1341
LmnI GCTCC 4 cut(s) 260, 953, 1310, 1376
Lsp1109I GCAGC 3 cut(s) 106, 397, 1346
LweI GCATC 7 cut(s) 3, 277, 665, 793, 1003, 1321, 1322
MaeI CTAG 5 cut(s) 123, 746, 753, 993, 1148
MaeIII GTNAC 2 cut(s) 1438, 1453
MalI GATC 3 cut(s) 830, 945, 1343
MboI GATC 3 cut(s) 828, 943, 1341
MfeI CAATTG 1 cut(s) 1359
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 9 cut(s) 295, 419, 602, 857, 916, 1026, 1359, 1391, 1433
MlyI GAGTC 1 cut(s) 796
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 4 cut(s) 777, 1029, 1049, 1224
MslI CAYNNNNRTG 2 cut(s) 661, 1318
MspA1I CMGCKG 1 cut(s) 1337
MspI CCGG 2 cut(s) 99, 1194
MspR9I CCNGG 4 cut(s) 100, 555, 824, 1256
MunI CAATTG 1 cut(s) 1359
MvaI CCWGG 3 cut(s) 555, 824, 1256
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 5 cut(s) 53, 410, 749, 1076, 1385
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 1 cut(s) 847
NdeI CATATG 1 cut(s) 998
NdeII GATC 3 cut(s) 828, 943, 1341
NlaIII CATG 6 cut(s) 143, 336, 563, 851, 1321, 1348
NlaIV GGNNCC 3 cut(s) 97, 214, 451
NmuCI GTSAC 2 cut(s) 1438, 1453
NsbI TGCGCA 1 cut(s) 1448
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 553
PinAI ACCGGT 1 cut(s) 1193
PkrI GCNGC 4 cut(s) 46, 121, 412, 1336
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
Psp6I CCWGG 3 cut(s) 553, 822, 1254
PspGI CCWGG 3 cut(s) 553, 822, 1254
PspN4I GGNNCC 3 cut(s) 97, 214, 451
PspPI GGNCC 2 cut(s) 449, 1325
PstI CTGCAG 1 cut(s) 1429
PvuII CAGCTG 1 cut(s) 1337
RseI CAYNNNNRTG 2 cut(s) 661, 1318
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 4 cut(s) 777, 1029, 1049, 1224
SatI GCNGC 4 cut(s) 45, 120, 411, 1335
Sau3AI GATC 3 cut(s) 828, 943, 1341
Sau96I GGNCC 2 cut(s) 449, 1325
SchI GAGTC 1 cut(s) 796
ScrFI CCNGG 4 cut(s) 100, 555, 824, 1256
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 7 cut(s) 3, 277, 665, 793, 1003, 1321, 1322
SfcI CTRYAG 5 cut(s) 618, 684, 1005, 1152, 1425
SinI GGWCC 2 cut(s) 449, 1325
SmiMI CAYNNNNRTG 2 cut(s) 661, 1318
SmlI CTYRAG 2 cut(s) 281, 1367
SmoI CTYRAG 2 cut(s) 281, 1367
SpeI ACTAGT 1 cut(s) 745
Sse9I AATT 9 cut(s) 295, 419, 602, 857, 916, 1026, 1359, 1391, 1433
SsiI CCGC 7 cut(s) 44, 108, 394, 413, 501, 713, 1323
SspI AATATT 1 cut(s) 550
SspMI CTAG 5 cut(s) 123, 746, 753, 993, 1148
StyD4I CCNGG 4 cut(s) 98, 553, 822, 1254
StyI CCWWGG 1 cut(s) 847
TaaI ACNGT 3 cut(s) 272, 685, 1405
TaqI TCGA 1 cut(s) 324
TasI AATT 9 cut(s) 295, 419, 602, 857, 916, 1026, 1359, 1391, 1433
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 4 cut(s) 777, 1029, 1049, 1224
Tru9I TTAA 4 cut(s) 777, 1029, 1049, 1224
TscAI CASTG 3 cut(s) 529, 1081, 1456
TseFI GTSAC 2 cut(s) 1438, 1453
TseI GCWGC 3 cut(s) 119, 410, 1334
Tsp45I GTSAC 2 cut(s) 1438, 1453
TspDTI ATGAA 5 cut(s) 66, 441, 597, 1247, 1286
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 3 cut(s) 529, 1081, 1456
VpaK11BI GGWCC 2 cut(s) 449, 1325
XapI RAATTY 4 cut(s) 602, 857, 916, 1433
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 5 cut(s) 123, 746, 753, 993, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.