Rw4G000350

Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
792632 .. 801512
8881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000350.1

Sequence Viewer

Length: 1449 bp
ATGGCGAGGAAGATGCTAGTTGATGGTGAGCTGAGCAAACCGAATGAAGAGGAGGCCCACTATGACTTCGACTTGTTTGTTATTGGGCTGGAAGCGGTGGTTGCCATATGTGAGCTTCCATTTCATCCTATAAGTTCTGAAGTGATTGGAGGAGTTGGTGGAACATGTGTCATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTGTATGGAGCATCTTTTGGCGGTGAAATTCAGGATGCCAAGAATTATGGGTGGGAAGTAAGTGACAAAGTTGATTTCAACTGGAAGAAACTTTTGCAGAAAAAGACGGATGAAATAGTTCGATTAAATGGCATATACAAGCGTTTATTGTCGAATGCTGGGGTTAAATTGTTTGAAGGAGAGGGTAAGCTAGTTGGTCCCAATGAAGTTGAGGTGACCCAGCTAGATGGCACTAAATTGAGCTATTCAGCAAAGCACATATTGATTGCAACTGGCAGTAGGGCTCATCGACCTGGTATTCCTGGTGAGGAATTGGGTATAACATCTGACGAAGCATTGAGTTTGGAGGAGTTACCTAAACGCGCTGTGGTGCTAGGGGGAGGATATATAGCGGTCGAGTTTGCCTCAATATGGCGTGGGATGGGCGCTTCTGTGGATCTTTTCTTCAGAAAGGAACTTCCATTGAGAGGTTTTGATGATGAAATGAGGGCAGTTGTTGCAAGGAATCTGGAAGGTAGGGGAATTAATTTACACCCACAAACAAATCTGACAGAGTTGATAAAAACAGATGATGGCATAAAAGTTATCACAGATCATGGTGAAGAGCTGATAGCGGATGTTGTGTTGTTCGCCACTGGTCGGGCTCCCAATACAAAGAGGTTGAATTTGGAAGCCGTGAGTGTGGAACTTGATAAAACAGGAGCTGTAAAGGTGGACGAGTATTCATGTACCAATGTTCCTAGTATATGGGCTGTTGGTGATGTTACAAACCGGGCTAACCTTACCCCTGTTGCTCTAATGGAGGGAACATGCTTTGCAAAAACAGTTTTTGGTGGGCAACCTAGCAAACCGGATTACAGAGATATACCTTGTGCAGTTTTTAGCATACCACCTCTATCTGTGGTGGGACTTAATGAAGAACAGGCAGTAGAACAAGCCAACGGTGATTTATTAGTTTTCACATCAACCTTCAATCCAATGAAGAACACTGTATCCGGACGGCAAGAAAAGTCGGTTATGAAGCTTGTTGTTGATGCTGAGACGGATAAGGTTCTAGGAGCATCCATGTGTGGGCCAGATTCACCTGAGATTATGCAGGGCATTGCTATTGCACTGAAATGTGGAGCAACCAAGGCACAATTTGACAGTACAGTAGGAATACACCCTTCTGCTGCAGAGGAATTTGTGACCATGCGTTCTGTGACAAGGCGTGTTTCTGCACGTGGCAAACCAAAGACAAGTCTATAA

Protein Analysis

482

Amino Acids

52.08

Weight (kDa)

5.44

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 49 - 336 8.8e-61 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 141 - 320 8e-13 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 188 - 262 1.5e-18 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim PF02852 356 - 465 5.1e-30 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 1196
AciI CCGC 4 cut(s) 95, 222, 593, 815
AclWI GGATC 1 cut(s) 645
AcsI RAATTY 3 cut(s) 228, 865, 1382
AcuI CTGAAG 2 cut(s) 159, 631
AcvI CACGTG 1 cut(s) 1424
AfaI GTAC 2 cut(s) 931, 1351
AfiI CCNNNNNNNGG 4 cut(s) 612, 668, 840, 1272
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 4 cut(s) 280, 377, 865, 1174
AjnI CCWGG 2 cut(s) 493, 502
AloI GAACNNNNNNTCC 2 cut(s) 1178, 1210
AluBI AGCT 8 cut(s) 31, 115, 391, 424, 444, 808, 905, 1225
AluI AGCT 8 cut(s) 31, 115, 391, 424, 444, 808, 905, 1225
Alw26I GTCTC 1 cut(s) 1235
AlwI GGATC 1 cut(s) 645
AlwNI CAGNNNCTG 1 cut(s) 905
Aor13HI TCCGGA 1 cut(s) 1196
AoxI GGCC 2 cut(s) 54, 1274
ApeKI GCWGC 1 cut(s) 1373
ApoI RAATTY 3 cut(s) 228, 865, 1382
AseI ATTAAT 1 cut(s) 726
Asp700I GAANNNNTTC 1 cut(s) 318
AspLEI GCGC 2 cut(s) 566, 629
AspS9I GGNCC 3 cut(s) 55, 398, 1274
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 8 cut(s) 38, 236, 427, 518, 812, 971, 1157, 1275
AvaII GGWCC 1 cut(s) 398
BanII GRGCYC 2 cut(s) 487, 847
BbrPI CACGTG 1 cut(s) 1424
BbvI GCAGC 1 cut(s) 1360
BccI CCATC 4 cut(s) 17, 422, 616, 767
BceAI ACGGC 2 cut(s) 860, 1217
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 495, 504
BciVI GTATCC 1 cut(s) 1204
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 1 cut(s) 1235
BfaI CTAG 7 cut(s) 17, 392, 425, 575, 942, 1044, 1256
BfmI CTRYAG 1 cut(s) 1374
BfoI RGCGCY 1 cut(s) 630
BfuI GTATCC 1 cut(s) 1204
BisI GCNGC 1 cut(s) 1374
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 1375
Bme1390I CCNGG 3 cut(s) 495, 504, 974
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 3 cut(s) 55, 398, 1274
BmiI GGNNCC 2 cut(s) 400, 846
BmrFI CCNGG 3 cut(s) 495, 504, 974
BmsI GCATC 5 cut(s) 3, 221, 226, 1225, 1271
BplI GAGNNNNNCTC 2 cut(s) 590, 622
Bpu1102I GCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 974
BsaAI YACGTR 1 cut(s) 1424
BsaJI CCNNGG 1 cut(s) 1332
BsaWI WCCGGW 2 cut(s) 1051, 1196
Bsc4I CCNNNNNNNGG 4 cut(s) 612, 668, 840, 1272
Bse1I ACTGG 3 cut(s) 287, 478, 841
Bse3DI GCAATG 1 cut(s) 1302
BseAI TCCGGA 1 cut(s) 1196
BseBI CCWGG 2 cut(s) 495, 504
BseDI CCNNGG 1 cut(s) 1332
BseGI GGATG 6 cut(s) 124, 241, 316, 627, 823, 1262
BseLI CCNNNNNNNGG 4 cut(s) 612, 668, 840, 1272
BseMI GCAATG 1 cut(s) 1302
BseMII CTCAG 3 cut(s) 23, 1230, 1278
BseNI ACTGG 3 cut(s) 287, 478, 841
BseRI GAGGAG 3 cut(s) 65, 165, 563
BseXI GCAGC 1 cut(s) 1360
BseYI CCCAGC 2 cut(s) 359, 420
BsgI GTGCAG 2 cut(s) 1095, 1404
Bsh1236I CGCG 1 cut(s) 564
Bsh1285I CGRYCG 1 cut(s) 597
BshFI GGCC 2 cut(s) 56, 1276
BsiEI CGRYCG 1 cut(s) 597
BsiSI CCGG 3 cut(s) 973, 1052, 1197
BslFI GGGAC 2 cut(s) 384, 1122
BslI CCNNNNNNNGG 4 cut(s) 612, 668, 840, 1272
BsmAI GTCTC 1 cut(s) 1235
BsmBI CGTCTC 1 cut(s) 1235
BsmFI GGGAC 2 cut(s) 384, 1122
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 2 cut(s) 56, 1276
Bsp1286I GDGCHC 2 cut(s) 487, 847
Bsp13I TCCGGA 1 cut(s) 1196
Bsp143I GATC 2 cut(s) 637, 793
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 4 cut(s) 95, 222, 593, 815
BspANI GGCC 2 cut(s) 56, 1276
BspCNI CTCAG 3 cut(s) 24, 1231, 1279
BspEI TCCGGA 1 cut(s) 1196
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 2 cut(s) 400, 846
BspMAI CTGCAG 1 cut(s) 1378
BspPI GGATC 1 cut(s) 645
BspQI GCTCTTC 1 cut(s) 798
BsrDI GCAATG 1 cut(s) 1302
BsrI ACTGG 3 cut(s) 287, 478, 841
BssECI CCNNGG 1 cut(s) 1332
BssMI GATC 2 cut(s) 637, 793
BssT1I CCWWGG 1 cut(s) 1332
Bst2UI CCWGG 2 cut(s) 495, 504
Bst4CI ACNGT 5 cut(s) 1027, 1145, 1192, 1349, 1354
Bst6I CTCTTC 2 cut(s) 42, 798
BstAPI GCANNNNNTGC 1 cut(s) 698
BstBAI YACGTR 1 cut(s) 1424
BstDEI CTNAG 3 cut(s) 32, 1239, 1287
BstEII GGTNACC 1 cut(s) 415
BstF5I GGATG 6 cut(s) 124, 241, 316, 627, 823, 1262
BstFNI CGCG 1 cut(s) 564
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 2 cut(s) 566, 629
BstKTI GATC 2 cut(s) 640, 796
BstMAI GTCTC 1 cut(s) 1235
BstMBI GATC 2 cut(s) 637, 793
BstMCI CGRYCG 1 cut(s) 597
BstMWI GCNNNNNNNGC 3 cut(s) 101, 698, 1334
BstNI CCWGG 2 cut(s) 495, 504
BstNSI RCATGY 2 cut(s) 168, 1014
BstPI GGTNACC 1 cut(s) 415
BstSCI CCNGG 3 cut(s) 493, 502, 972
BstSFI CTRYAG 1 cut(s) 1374
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 1360
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 428
BstYI RGATCY 1 cut(s) 637
BsuI GTATCC 1 cut(s) 1204
BsuRI GGCC 2 cut(s) 56, 1276
BtsCI GGATG 6 cut(s) 124, 241, 316, 627, 823, 1262
BtsIMutI CAGTG 3 cut(s) 834, 1188, 1313
CaiI CAGNNNCTG 1 cut(s) 905
CfoI GCGC 2 cut(s) 566, 629
Cfr13I GGNCC 3 cut(s) 55, 398, 1274
CsiI ACCWGGT 1 cut(s) 493
Csp6I GTAC 2 cut(s) 930, 1350
CviAII CATG 6 cut(s) 165, 797, 927, 1011, 1267, 1393
CviQI GTAC 2 cut(s) 930, 1350
DdeI CTNAG 3 cut(s) 32, 1239, 1287
DpnI GATC 2 cut(s) 639, 795
DpnII GATC 2 cut(s) 637, 793
Eam1104I CTCTTC 2 cut(s) 42, 798
EarI CTCTTC 2 cut(s) 42, 798
Eco130I CCWWGG 1 cut(s) 1332
Eco24I GRGCYC 2 cut(s) 487, 847
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 2 cut(s) 159, 631
Eco72I CACGTG 1 cut(s) 1424
Eco91I GGTNACC 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 493, 502
EcoT14I CCWWGG 1 cut(s) 1332
EcoT38I GRGCYC 2 cut(s) 487, 847
ErhI CCWWGG 1 cut(s) 1332
Esp3I CGTCTC 1 cut(s) 1235
FaeI CATG 6 cut(s) 168, 800, 930, 1014, 1270, 1396
FaqI GGGAC 2 cut(s) 384, 1122
FatI CATG 6 cut(s) 164, 796, 926, 1010, 1266, 1392
FauNDI CATATG 1 cut(s) 107
Fnu4HI GCNGC 1 cut(s) 1374
FokI GGATG 6 cut(s) 111, 248, 323, 634, 830, 1249
FriOI GRGCYC 2 cut(s) 487, 847
Fsp4HI GCNGC 1 cut(s) 1374
FspBI CTAG 7 cut(s) 17, 392, 425, 575, 942, 1044, 1256
GlaI GCGC 2 cut(s) 565, 628
GluI GCNGC 1 cut(s) 1374
GsaI CCCAGC 2 cut(s) 363, 424
HaeII RGCGCY 1 cut(s) 630
HaeIII GGCC 2 cut(s) 56, 1276
HapII CCGG 3 cut(s) 973, 1052, 1197
HhaI GCGC 2 cut(s) 566, 629
Hin1II CATG 6 cut(s) 168, 800, 930, 1014, 1270, 1396
Hin6I GCGC 2 cut(s) 564, 627
HinP1I GCGC 2 cut(s) 564, 627
HindIII AAGCTT 1 cut(s) 1223
HinfI GANTC 2 cut(s) 706, 1280
HpaII CCGG 3 cut(s) 973, 1052, 1197
HphI GGTGA 8 cut(s) 38, 236, 427, 518, 812, 971, 1157, 1275
Hpy166II GTNNAC 1 cut(s) 916
Hpy188I TCNGA 4 cut(s) 139, 529, 650, 750
Hpy188III TCNNGA 3 cut(s) 233, 710, 1197
Hpy8I GTNNAC 1 cut(s) 916
HpyAV CCTTC 4 cut(s) 371, 707, 1180, 1377
HpyCH4III ACNGT 5 cut(s) 1027, 1145, 1192, 1349, 1354
HpyCH4IV ACGT 1 cut(s) 1423
HpyCH4V TGCA 9 cut(s) 298, 470, 701, 1019, 1076, 1297, 1313, 1376, 1421
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 698, 1334
HpyF3I CTNAG 3 cut(s) 32, 1239, 1287
HpySE526I ACGT 1 cut(s) 1423
Hsp92II CATG 6 cut(s) 168, 800, 930, 1014, 1270, 1396
HspAI GCGC 2 cut(s) 564, 627
Kpn2I TCCGGA 1 cut(s) 1196
Kzo9I GATC 2 cut(s) 637, 793
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 5 cut(s) 209, 850, 902, 1259, 1325
Lsp1109I GCAGC 1 cut(s) 1360
LweI GCATC 5 cut(s) 3, 221, 226, 1225, 1271
MabI ACCWGGT 1 cut(s) 493
MaeI CTAG 7 cut(s) 17, 392, 425, 575, 942, 1044, 1256
MaeII ACGT 1 cut(s) 1423
MaeIII GTNAC 6 cut(s) 263, 415, 552, 964, 1387, 1402
MalI GATC 2 cut(s) 639, 795
MboI GATC 2 cut(s) 637, 793
MboII GAAGA 7 cut(s) 22, 59, 298, 637, 815, 1130, 1195
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 2 cut(s) 487, 847
MroI TCCGGA 1 cut(s) 1196
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 4 cut(s) 326, 366, 726, 1113
MslI CAYNNNNRTG 2 cut(s) 1267, 1318
MspI CCGG 3 cut(s) 973, 1052, 1197
MspR9I CCNGG 3 cut(s) 495, 504, 974
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 2 cut(s) 495, 504
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 3 cut(s) 101, 698, 1334
NciI CCSGG 1 cut(s) 974
NdeI CATATG 1 cut(s) 107
NdeII GATC 2 cut(s) 637, 793
NlaIII CATG 6 cut(s) 168, 800, 930, 1014, 1270, 1396
NlaIV GGNNCC 2 cut(s) 400, 846
NmuCI GTSAC 4 cut(s) 263, 415, 1387, 1402
NspI RCATGY 2 cut(s) 168, 1014
PciI ACATGT 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 798
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 2 cut(s) 706, 1280
PkrI GCNGC 1 cut(s) 1375
PmaCI CACGTG 1 cut(s) 1424
PmlI CACGTG 1 cut(s) 1424
Ppu21I YACGTR 1 cut(s) 1424
PscI ACATGT 1 cut(s) 164
PshBI ATTAAT 1 cut(s) 726
Psp6I CCWGG 2 cut(s) 493, 502
PspCI CACGTG 1 cut(s) 1424
PspEI GGTNACC 1 cut(s) 415
PspFI CCCAGC 2 cut(s) 359, 420
PspGI CCWGG 2 cut(s) 493, 502
PspN4I GGNNCC 2 cut(s) 400, 846
PspPI GGNCC 3 cut(s) 55, 398, 1274
PstI CTGCAG 1 cut(s) 1378
PstNI CAGNNNCTG 1 cut(s) 905
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 2 cut(s) 931, 1351
RsaNI GTAC 2 cut(s) 930, 1350
RseI CAYNNNNRTG 2 cut(s) 1267, 1318
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 4 cut(s) 326, 366, 726, 1113
SatI GCNGC 1 cut(s) 1374
Sau3AI GATC 2 cut(s) 637, 793
Sau96I GGNCC 3 cut(s) 55, 398, 1274
ScrFI CCNGG 3 cut(s) 495, 504, 974
SduI GDGCHC 2 cut(s) 487, 847
SexAI ACCWGGT 1 cut(s) 493
SfaNI GCATC 5 cut(s) 3, 221, 226, 1225, 1271
SfcI CTRYAG 1 cut(s) 1374
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 1267, 1318
SsiI CCGC 4 cut(s) 95, 222, 593, 815
SspMI CTAG 7 cut(s) 17, 392, 425, 575, 942, 1044, 1256
StyD4I CCNGG 3 cut(s) 493, 502, 972
StyI CCWWGG 1 cut(s) 1332
TaaI ACNGT 5 cut(s) 1027, 1145, 1192, 1349, 1354
TaiI ACGT 1 cut(s) 1426
TaqI TCGA 5 cut(s) 69, 322, 353, 490, 597
TatI WGTACW 1 cut(s) 1349
TfiI GAWTC 2 cut(s) 706, 1280
Tru1I TTAA 4 cut(s) 326, 366, 726, 1113
Tru9I TTAA 4 cut(s) 326, 366, 726, 1113
TscAI CASTG 3 cut(s) 841, 1195, 1320
TseFI GTSAC 4 cut(s) 263, 415, 1387, 1402
TseI GCWGC 1 cut(s) 1373
Tsp45I GTSAC 4 cut(s) 263, 415, 1387, 1402
TspDTI ATGAA 9 cut(s) 60, 113, 327, 420, 696, 915, 1131, 1196, 1235
TspGWI ACGGA 2 cut(s) 323, 1259
TspRI CASTG 3 cut(s) 841, 1195, 1320
VpaK11BI GGWCC 1 cut(s) 398
VspI ATTAAT 1 cut(s) 726
XapI RAATTY 3 cut(s) 228, 865, 1382
XceI RCATGY 2 cut(s) 168, 1014
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 7 cut(s) 17, 392, 425, 575, 942, 1044, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.