Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008728.1

Orthogroup ID

OG0003760

Physical Location & Seq

Genomic Coordinates Reverse (-)

43738 .. 52150

Gene Structure 8413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008728.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

atgctagttgatggtgagctgagcaaaccgaatgaagaggaggcccactatgacttcgacttgtttgttattggggctggaagcggtggtgttcgtgcctccagatttgcagctaatttcggagctaaggttgccatatgtgagcttccatttcatcctatcagttctgaagtgattggaggagttggtggaacatgtgtcattcgtggttgtgttcccaaaaagattttggtgtatggagcatcttttggcggtgaaattcaggatgccaagaattatgggtgggaagtgagtgacaaagttgatttcaactggaagaaacttttgcagaaaaagacggatgaaatagttcgattaaatggcatatacaagcgtttattgtcgaatgctggggttaaattgtttgaaggagagggtaagctagttggtcccaatgaagttgaggtgacccagcttgatggcactaaattgagctattcagcaaagcacatattgattgcaactggcagtagggctcatcgaattggtattcctggtgaggaattgggtataacatctgacgaagcattgagtttggaggagttgcctaaacgcgccgtggtgctaggggcaggatatatagcggtcgagtttgcctcaatatggcgtgggatgggcgcttctgtggatcttttcttcagaaaggaacttccattgagaggttttgatgatgaaatgagggcagttgttgcaaggaatctggaaggtaggggaattaatttacacccacaaacaaatctgacagagttgataaaaacagatgatggcataaaagttatcacagatcatggtgaagagctgatagcggatgttgtgctgttcgccactggtcgggctcccaatacaaagaggttgaatttggaagccgtgggtgtggaacttgataaaacaggagctgtaaaggtggacgagtattcatgtaccaatgttcctagtatatgggctgttggtgatgttacaaaccgggctaaccttacccctgttgctctaatggagggaacatgctttgcaaaaacagtttttggtgggcaacctagcaaaccagattacagagatataccttgtgcagtttttagcataccacctctatctgtggtgggacttaatgaagaacaggcagtagaacaagccaacggtgatttattagttttcacatcaaccttcaatccaatgaagaacactgtatccggacggcaagaaaagtcggttatgaagcttgttgttgatgctgagacggataaggttctaggagcatccatgtgtgggccagattcacctgagattatgcagggcattgctattgcactgaaatgtggagcaaccaaggcacaatttgacagtacagtaggaatacacccttctgctgcagaggaatttgtgaccatgcgttctgtgacaaggcgtgtttctgcacgtggcaaaccaaagacaagtctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042221 GO:0042579 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

492

Amino Acids

52.89

Weight (kDa)

5.61

Isoelectric Point (pI)

20.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24170 AT3G24170 AT3G24170
fragaria_vesca	FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450
malus_domestica	MD04G1004900.v1.1
prunus_persica	Prupe.1G004800_v2.0.a1 Prupe.1G004800_v2.0.a1
pyrus_communis	pycom04g00490
rosa_chinensis	RchiOBHm_Chr4g0385881
rosa_laevigata	RLG00000010205 RLG00000012039
rosa_multiflora	Rmu_sc0008728.1_g000007
rosa_roxburghii	Rroxscaffold_1G00020680 Rroxscaffold_2G00103170 Rroxscaffold_5G00333480
rosa_rugosa	Rorug03G0301900 Rorug03G0302000 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug06G0225700
rosa_samantha	Rh4AG006900 Rh4BG004500 Rh4DG006500 Rh6BG346300 Rh6DG339100
rosa_wichuraiana	Rw4G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	594
AccIII	TCCGGA	1 cut(s)	1226
AciI	CCGC	4 cut(s)	84, 252, 623, 845
AclWI	GGATC	1 cut(s)	675
AcsI	RAATTY	3 cut(s)	258, 895, 1412
AcuI	CTGAAG	2 cut(s)	189, 661
AcvI	CACGTG	1 cut(s)	1454
AfaI	GTAC	2 cut(s)	961, 1381
AfiI	CCNNNNNNNGG	4 cut(s)	642, 698, 870, 1302
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	310, 407, 895, 1204
AjnI	CCWGG	1 cut(s)	532
AloI	GAACNNNNNNTCC	2 cut(s)	1208, 1240
Alw26I	GTCTC	1 cut(s)	1265
AlwI	GGATC	1 cut(s)	675
AlwNI	CAGNNNCTG	1 cut(s)	935
Aor13HI	TCCGGA	1 cut(s)	1226
AoxI	GGCC	2 cut(s)	42, 1304
ApeKI	GCWGC	2 cut(s)	110, 1403
ApoI	RAATTY	3 cut(s)	258, 895, 1412
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	2 cut(s)	596, 659
AspS9I	GGNCC	3 cut(s)	43, 428, 1304
AsuC2I	CCSGG	1 cut(s)	1004
AsuHPI	GGTGA	8 cut(s)	26, 266, 457, 548, 842, 1001, 1187, 1305
AvaII	GGWCC	1 cut(s)	428
BanII	GRGCYC	2 cut(s)	517, 877
BbrPI	CACGTG	1 cut(s)	1454
BbvI	GCAGC	2 cut(s)	122, 1390
BccI	CCATC	4 cut(s)	5, 452, 646, 797
BceAI	ACGGC	3 cut(s)	581, 890, 1247
BciT130I	CCWGG	1 cut(s)	534
BciVI	GTATCC	1 cut(s)	1234
BcnI	CCSGG	1 cut(s)	1004
BcoDI	GTCTC	1 cut(s)	1265
BfaI	CTAG	6 cut(s)	5, 422, 605, 972, 1074, 1286
BfmI	CTRYAG	1 cut(s)	1404
BfoI	RGCGCY	1 cut(s)	660
BfuI	GTATCC	1 cut(s)	1234
BisI	GCNGC	2 cut(s)	111, 1404
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	2 cut(s)	112, 1405
Bme1390I	CCNGG	2 cut(s)	534, 1004
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	3 cut(s)	43, 428, 1304
BmiI	GGNNCC	2 cut(s)	430, 876
BmrFI	CCNGG	2 cut(s)	534, 1004
BmsI	GCATC	4 cut(s)	251, 256, 1255, 1301
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
BpmI	CTGGAG	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	1004
BsaAI	YACGTR	1 cut(s)	1454
BsaJI	CCNNGG	3 cut(s)	597, 906, 1362
BsaWI	WCCGGW	1 cut(s)	1226
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	4 cut(s)	642, 698, 870, 1302
Bse1I	ACTGG	3 cut(s)	317, 508, 871
Bse3DI	GCAATG	1 cut(s)	1332
BseAI	TCCGGA	1 cut(s)	1226
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	3 cut(s)	597, 906, 1362
BseGI	GGATG	6 cut(s)	154, 271, 346, 657, 853, 1292
BseLI	CCNNNNNNNGG	4 cut(s)	642, 698, 870, 1302
BseMI	GCAATG	1 cut(s)	1332
BseMII	CTCAG	3 cut(s)	11, 1260, 1308
BseNI	ACTGG	3 cut(s)	317, 508, 871
BseRI	GAGGAG	3 cut(s)	53, 195, 593
BseXI	GCAGC	2 cut(s)	122, 1390
BseYI	CCCAGC	2 cut(s)	389, 450
BsgI	GTGCAG	2 cut(s)	1125, 1434
Bsh1236I	CGCG	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	44, 1306
BsiEI	CGRYCG	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	1003, 1227
BslFI	GGGAC	2 cut(s)	414, 1152
BslI	CCNNNNNNNGG	4 cut(s)	642, 698, 870, 1302
BsmAI	GTCTC	1 cut(s)	1265
BsmBI	CGTCTC	1 cut(s)	1265
BsmFI	GGGAC	2 cut(s)	414, 1152
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	44, 1306
Bsp1286I	GDGCHC	2 cut(s)	517, 877
Bsp13I	TCCGGA	1 cut(s)	1226
Bsp143I	GATC	2 cut(s)	667, 823
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	4 cut(s)	84, 252, 623, 845
BspANI	GGCC	2 cut(s)	44, 1306
BspCNI	CTCAG	3 cut(s)	12, 1261, 1309
BspEI	TCCGGA	1 cut(s)	1226
BspFNI	CGCG	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	430, 876
BspMAI	CTGCAG	1 cut(s)	1408
BspPI	GGATC	1 cut(s)	675
BspQI	GCTCTTC	1 cut(s)	828
BsrDI	GCAATG	1 cut(s)	1332
BsrI	ACTGG	3 cut(s)	317, 508, 871
BssECI	CCNNGG	3 cut(s)	597, 906, 1362
BssMI	GATC	2 cut(s)	667, 823
BssT1I	CCWWGG	1 cut(s)	1362
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	5 cut(s)	1057, 1175, 1222, 1379, 1384
Bst6I	CTCTTC	2 cut(s)	30, 828
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstBAI	YACGTR	1 cut(s)	1454
BstDEI	CTNAG	4 cut(s)	20, 126, 1269, 1317
BstDSI	CCRYGG	2 cut(s)	597, 906
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	6 cut(s)	154, 271, 346, 657, 853, 1292
BstFNI	CGCG	1 cut(s)	594
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	2 cut(s)	596, 659
BstKTI	GATC	2 cut(s)	670, 826
BstMAI	GTCTC	1 cut(s)	1265
BstMBI	GATC	2 cut(s)	667, 823
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 728, 1364
BstNI	CCWGG	1 cut(s)	534
BstNSI	RCATGY	2 cut(s)	198, 1044
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	532, 1002
BstSFI	CTRYAG	1 cut(s)	1404
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	122, 1390
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	1234
BsuRI	GGCC	2 cut(s)	44, 1306
BtgI	CCRYGG	2 cut(s)	597, 906
BtsCI	GGATG	6 cut(s)	154, 271, 346, 657, 853, 1292
BtsIMutI	CAGTG	3 cut(s)	864, 1218, 1343
CaiI	CAGNNNCTG	1 cut(s)	935
CfoI	GCGC	2 cut(s)	596, 659
Cfr13I	GGNCC	3 cut(s)	43, 428, 1304
Csp6I	GTAC	2 cut(s)	960, 1380
CviAII	CATG	6 cut(s)	195, 827, 957, 1041, 1297, 1423
CviQI	GTAC	2 cut(s)	960, 1380
DdeI	CTNAG	4 cut(s)	20, 126, 1269, 1317
DpnI	GATC	2 cut(s)	669, 825
DpnII	GATC	2 cut(s)	667, 823
Eam1104I	CTCTTC	2 cut(s)	30, 828
EarI	CTCTTC	2 cut(s)	30, 828
Eco130I	CCWWGG	1 cut(s)	1362
Eco24I	GRGCYC	2 cut(s)	517, 877
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	189, 661
Eco72I	CACGTG	1 cut(s)	1454
Eco91I	GGTNACC	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	1362
EcoT38I	GRGCYC	2 cut(s)	517, 877
ErhI	CCWWGG	1 cut(s)	1362
Esp3I	CGTCTC	1 cut(s)	1265
FaeI	CATG	6 cut(s)	198, 830, 960, 1044, 1300, 1426
FaqI	GGGAC	2 cut(s)	414, 1152
FatI	CATG	6 cut(s)	194, 826, 956, 1040, 1296, 1422
FauNDI	CATATG	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	111, 1404
FokI	GGATG	6 cut(s)	141, 278, 353, 664, 860, 1279
FriOI	GRGCYC	2 cut(s)	517, 877
Fsp4HI	GCNGC	2 cut(s)	111, 1404
FspBI	CTAG	6 cut(s)	5, 422, 605, 972, 1074, 1286
GlaI	GCGC	2 cut(s)	595, 658
GluI	GCNGC	2 cut(s)	111, 1404
GsaI	CCCAGC	2 cut(s)	393, 454
GsuI	CTGGAG	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	660
HaeIII	GGCC	2 cut(s)	44, 1306
HapII	CCGG	2 cut(s)	1003, 1227
HhaI	GCGC	2 cut(s)	596, 659
Hin1II	CATG	6 cut(s)	198, 830, 960, 1044, 1300, 1426
Hin6I	GCGC	2 cut(s)	594, 657
HinP1I	GCGC	2 cut(s)	594, 657
HindIII	AAGCTT	1 cut(s)	1253
HinfI	GANTC	2 cut(s)	736, 1310
HpaII	CCGG	2 cut(s)	1003, 1227
HphI	GGTGA	8 cut(s)	26, 266, 457, 548, 842, 1001, 1187, 1305
Hpy166II	GTNNAC	1 cut(s)	946
Hpy188I	TCNGA	5 cut(s)	122, 169, 559, 680, 780
Hpy188III	TCNNGA	4 cut(s)	102, 263, 740, 1227
Hpy8I	GTNNAC	1 cut(s)	946
HpyAV	CCTTC	4 cut(s)	401, 737, 1210, 1407
HpyCH4III	ACNGT	5 cut(s)	1057, 1175, 1222, 1379, 1384
HpyCH4IV	ACGT	1 cut(s)	1453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 728, 1364
HpyF3I	CTNAG	4 cut(s)	20, 126, 1269, 1317
HpySE526I	ACGT	1 cut(s)	1453
Hsp92II	CATG	6 cut(s)	198, 830, 960, 1044, 1300, 1426
HspAI	GCGC	2 cut(s)	594, 657
Kpn2I	TCCGGA	1 cut(s)	1226
Kzo9I	GATC	2 cut(s)	667, 823
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	6 cut(s)	122, 239, 880, 932, 1289, 1355
Lsp1109I	GCAGC	2 cut(s)	122, 1390
LweI	GCATC	4 cut(s)	251, 256, 1255, 1301
MaeI	CTAG	6 cut(s)	5, 422, 605, 972, 1074, 1286
MaeII	ACGT	1 cut(s)	1453
MaeIII	GTNAC	5 cut(s)	293, 445, 994, 1417, 1432
MalI	GATC	2 cut(s)	669, 825
MboI	GATC	2 cut(s)	667, 823
MboII	GAAGA	6 cut(s)	47, 328, 667, 845, 1160, 1225
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	2 cut(s)	517, 877
MroI	TCCGGA	1 cut(s)	1226
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	4 cut(s)	356, 396, 756, 1143
MslI	CAYNNNNRTG	2 cut(s)	1297, 1348
MspI	CCGG	2 cut(s)	1003, 1227
MspR9I	CCNGG	2 cut(s)	534, 1004
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	534
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	3 cut(s)	131, 728, 1364
NciI	CCSGG	1 cut(s)	1004
NdeI	CATATG	1 cut(s)	137
NdeII	GATC	2 cut(s)	667, 823
NlaIII	CATG	6 cut(s)	198, 830, 960, 1044, 1300, 1426
NlaIV	GGNNCC	2 cut(s)	430, 876
NmuCI	GTSAC	4 cut(s)	293, 445, 1417, 1432
NspI	RCATGY	2 cut(s)	198, 1044
PciI	ACATGT	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	828
PctI	GAATGC	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	736, 1310
PkrI	GCNGC	2 cut(s)	112, 1405
PmaCI	CACGTG	1 cut(s)	1454
PmlI	CACGTG	1 cut(s)	1454
Ppu21I	YACGTR	1 cut(s)	1454
PscI	ACATGT	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	532
PspCI	CACGTG	1 cut(s)	1454
PspEI	GGTNACC	1 cut(s)	445
PspFI	CCCAGC	2 cut(s)	389, 450
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	430, 876
PspPI	GGNCC	3 cut(s)	43, 428, 1304
PstI	CTGCAG	1 cut(s)	1408
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	2 cut(s)	961, 1381
RsaNI	GTAC	2 cut(s)	960, 1380
RseI	CAYNNNNRTG	2 cut(s)	1297, 1348
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	4 cut(s)	356, 396, 756, 1143
SatI	GCNGC	2 cut(s)	111, 1404
Sau3AI	GATC	2 cut(s)	667, 823
Sau96I	GGNCC	3 cut(s)	43, 428, 1304
ScrFI	CCNGG	2 cut(s)	534, 1004
SduI	GDGCHC	2 cut(s)	517, 877
SfaNI	GCATC	4 cut(s)	251, 256, 1255, 1301
SfcI	CTRYAG	1 cut(s)	1404
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	1297, 1348
SsiI	CCGC	4 cut(s)	84, 252, 623, 845
SspMI	CTAG	6 cut(s)	5, 422, 605, 972, 1074, 1286
StyD4I	CCNGG	2 cut(s)	532, 1002
StyI	CCWWGG	1 cut(s)	1362
TaaI	ACNGT	5 cut(s)	1057, 1175, 1222, 1379, 1384
TaiI	ACGT	1 cut(s)	1456
TaqI	TCGA	5 cut(s)	57, 352, 383, 520, 627
TatI	WGTACW	1 cut(s)	1379
TfiI	GAWTC	2 cut(s)	736, 1310
Tru1I	TTAA	4 cut(s)	356, 396, 756, 1143
Tru9I	TTAA	4 cut(s)	356, 396, 756, 1143
TscAI	CASTG	3 cut(s)	871, 1225, 1350
TseFI	GTSAC	4 cut(s)	293, 445, 1417, 1432
TseI	GCWGC	2 cut(s)	110, 1403
Tsp45I	GTSAC	4 cut(s)	293, 445, 1417, 1432
TspDTI	ATGAA	9 cut(s)	48, 143, 357, 450, 726, 945, 1161, 1226, 1265
TspGWI	ACGGA	2 cut(s)	353, 1289
TspRI	CASTG	3 cut(s)	871, 1225, 1350
VpaK11BI	GGWCC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	3 cut(s)	258, 895, 1412
XceI	RCATGY	2 cut(s)	198, 1044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	6 cut(s)	5, 422, 605, 972, 1074, 1286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.