Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003760

Physical Location & Seq

Genomic Coordinates Forward (+)

430673 .. 441254

Gene Structure 10582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G004800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGTCGAGGAAGATGCTTATTGATGGTGAGGTGAGCCAACCTAATCAAGGAGAGGTCCACTACGACTTCGACTTGTTCGTTATTGGGGCTGGAAGCGGCGGTGTCCGTGCCTCCAGATTTTCCGCAAATTTTGGAGCTAAGGTTGGGATATGTGAGCTTCCATTTCATCCTATCAGCTCAGAAGTAGTTGGAGGAGTTGGTGGAACATGTGTCATTCGTGGTTGTGTTCCCAAAAAGATCTTGGTGTATGGAGCATCTTTTGGTGGTGAAATCGAGGATGCCAGGAATTATGGGTGGGAAGTGAATGAGAAAGTTGATTTCAACTGGAAGAAACTTTTGCATAAGAAGACAGAGGAAATAATTCGATTAAATGGAATATACAAGCGTTTATTGTCGAATGCTGGGGTTAAATTGTTTGAAGGAGAGGGGAAGATAGTTGGTCCCAACGAAGTTGAGGTGACACAGCTAGATGGCACTAAATTGAGCTATTCAGCCAAGCACATATTGATTGCAACTGGCAGTCGGGCTCAACGACCTGCTATTCCTGGGCAGGAATTGGGTATATCATCTGATGAAGCATTGAGTTTGGAGGAGTTACCTAAACGTGTTGTGGTGCTTGGCGGAGGGTACATTGCTGTTGAGTTTGCTTCAATATGGCGTGGGATGGGTGTTTCAGTGGATCTATTCTTCAGAAAGGAACTTCCATTGAGAGGTTTTGATGATGAAATGAGGGCAGCGGTTGCACGGAATCTGGAAGGAAGGGGAATTGATCTACACCCACAGACAAATTTGACAGAGTTGATAAAAACAGAGGATGGCATAAAAGTTAGCACGGATCATGGTGAAGAGCTGATAGCAGATGTTGTACTGTTTGCCACTGGTCGAGCTCCCAATACAAAGAGGTTGAATTTGGAAGCCGTAGGTGTGGAACTTGATAAAACAGGAGCTGTGAAGGTAGATGAGTATTCACGTACCAACATACCTAGCATATGGGCTGTCGGTGATGTTACAAACCGAGCAAACCTTACCCCTGTGGCTTTAATGGAGGGAACTTGCTTCGCAAAAACTGTTTTTGGTGACCAACCTAGCAAACCGGATCACCGCGATATACCCTGTGCAGTGTTTTGCATTCCACCTCTTTCTGTTGTGGGCCTTAGTGAAGAACAGGCAATAGAACAAGCCAAAGGTGATATATTGGTTTTCACATCAACCTTCACTCCAATGAAGAACACTGTATCTGGACGACAAGAAAAGACAATTATGAAGCTTCTTGTTGATGCTGAGACAGATAAAGTTATTGGGGCATCCATGTGTGGGCCAGATGCACCTGAGATTGTGCAGGGCATTGCTATTGCACTGAAGTGTGGGGCAACCAAGGCACAGTTTGACAGTACGGTGGGAATACACCCTTCTGCAGCAGAGGAATTTGTGACAATGCGTTCAGTGACGAGGCGTATTGCTGCAGGTAGCAAACCAAAGACAAATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042221 GO:0042579 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

497

Amino Acids

53.47

Weight (kDa)

5.89

Isoelectric Point (pI)

27.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24170 AT3G24170 AT3G24170
fragaria_vesca	FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450
malus_domestica	MD04G1004900.v1.1
prunus_persica	Prupe.1G004800_v2.0.a1 Prupe.1G004800_v2.0.a1
pyrus_communis	pycom04g00490
rosa_chinensis	RchiOBHm_Chr4g0385881
rosa_laevigata	RLG00000010205 RLG00000012039
rosa_multiflora	Rmu_sc0008728.1_g000007
rosa_roxburghii	Rroxscaffold_1G00020680 Rroxscaffold_2G00103170 Rroxscaffold_5G00333480
rosa_rugosa	Rorug03G0301900 Rorug03G0302000 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug06G0225700
rosa_samantha	Rh4AG006900 Rh4BG004500 Rh4DG006500 Rh6BG346300 Rh6DG339100
rosa_wichuraiana	Rw4G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	544, 1454
AccII	CGCG	1 cut(s)	1104
AciI	CCGC	6 cut(s)	96, 99, 123, 621, 737, 1102
AclWI	GGATC	3 cut(s)	687, 843, 1104
AcsI	RAATTY	4 cut(s)	127, 787, 907, 1424
AcuI	CTGAAG	2 cut(s)	673, 1379
AfaI	GTAC	4 cut(s)	629, 867, 973, 1393
AfiI	CCNNNNNNNGG	3 cut(s)	47, 710, 1314
AflIII	ACRYGT	2 cut(s)	206, 604
AgsI	TTSAA	4 cut(s)	322, 419, 651, 907
AjnI	CCWGG	2 cut(s)	281, 544
AleI	CACNNNNGTG	1 cut(s)	1360
AluBI	AGCT	9 cut(s)	137, 157, 177, 466, 486, 850, 887, 947, 1267
AluI	AGCT	9 cut(s)	137, 157, 177, 466, 486, 850, 887, 947, 1267
Alw21I	GWGCWC	1 cut(s)	889
Alw26I	GTCTC	1 cut(s)	1277
AlwI	GGATC	3 cut(s)	687, 843, 1104
AlwNI	CAGNNNCTG	1 cut(s)	947
AoxI	GGCC	2 cut(s)	1150, 1316
ApeKI	GCWGC	3 cut(s)	734, 1415, 1460
ApoI	RAATTY	4 cut(s)	127, 787, 907, 1424
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	4 cut(s)	55, 440, 1150, 1316
AsuHPI	GGTGA	9 cut(s)	38, 43, 278, 469, 854, 1013, 1088, 1091, 1199
AvaII	GGWCC	2 cut(s)	55, 440
BanII	GRGCYC	2 cut(s)	529, 889
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	889
BbvI	GCAGC	3 cut(s)	746, 1427, 1447
BccI	CCATC	4 cut(s)	17, 464, 658, 809
BceAI	ACGGC	1 cut(s)	902
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	283, 546
BcoDI	GTCTC	1 cut(s)	1277
BfaI	CTAG	3 cut(s)	467, 984, 1086
BfmI	CTRYAG	2 cut(s)	1413, 1461
BfuAI	ACCTGC	2 cut(s)	544, 1454
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	4 cut(s)	97, 735, 1416, 1461
BlsI	GCNGC	4 cut(s)	98, 736, 1417, 1462
Bme1390I	CCNGG	2 cut(s)	283, 546
Bme18I	GGWCC	2 cut(s)	55, 440
BmgT120I	GGNCC	4 cut(s)	55, 440, 1150, 1316
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	2 cut(s)	283, 546
BmsI	GCATC	6 cut(s)	3, 263, 268, 1267, 1312, 1313
BpiI	GAAGAC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	971
BsaJI	CCNNGG	2 cut(s)	545, 1374
BsaWI	WCCGGW	1 cut(s)	1093
BsaXI	ACNNNNNCTCC	4 cut(s)	126, 156, 1201, 1231
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 710, 1314
Bse1I	ACTGG	3 cut(s)	329, 520, 883
Bse3DI	GCAATG	2 cut(s)	630, 1344
BseBI	CCWGG	2 cut(s)	283, 546
BseDI	CCNNGG	2 cut(s)	545, 1374
BseGI	GGATG	5 cut(s)	166, 283, 669, 820, 1304
BseLI	CCNNNNNNNGG	3 cut(s)	47, 710, 1314
BseMI	GCAATG	2 cut(s)	630, 1344
BseMII	CTCAG	3 cut(s)	192, 1272, 1320
BseNI	ACTGG	3 cut(s)	329, 520, 883
BseRI	GAGGAG	2 cut(s)	207, 605
BseXI	GCAGC	3 cut(s)	746, 1427, 1447
BseYI	CCCAGC	1 cut(s)	401
BsgI	GTGCAG	2 cut(s)	1137, 1358
Bsh1236I	CGCG	1 cut(s)	1104
BshFI	GGCC	2 cut(s)	1152, 1318
BsiHKAI	GWGCWC	1 cut(s)	889
BsiSI	CCGG	1 cut(s)	1094
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	3 cut(s)	47, 710, 1314
BsmAI	GTCTC	1 cut(s)	1277
BsmFI	GGGAC	1 cut(s)	426
BsmI	GAATGC	2 cut(s)	403, 1128
BsnI	GGCC	2 cut(s)	1152, 1318
Bsp1286I	GDGCHC	2 cut(s)	529, 889
Bsp143I	GATC	5 cut(s)	237, 679, 769, 835, 1096
BspACI	CCGC	6 cut(s)	96, 99, 123, 621, 737, 1102
BspANI	GGCC	2 cut(s)	1152, 1318
BspCNI	CTCAG	3 cut(s)	191, 1273, 1321
BspFNI	CGCG	1 cut(s)	1104
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	2 cut(s)	1417, 1465
BspMI	ACCTGC	2 cut(s)	544, 1454
BspPI	GGATC	3 cut(s)	687, 843, 1104
BspQI	GCTCTTC	1 cut(s)	840
BsrDI	GCAATG	2 cut(s)	630, 1344
BsrI	ACTGG	3 cut(s)	329, 520, 883
BssECI	CCNNGG	2 cut(s)	545, 1374
BssMI	GATC	5 cut(s)	237, 679, 769, 835, 1096
BssT1I	CCWWGG	1 cut(s)	1374
Bst2UI	CCWGG	2 cut(s)	283, 546
Bst4CI	ACNGT	6 cut(s)	870, 1069, 1234, 1383, 1391, 1396
Bst6I	CTCTTC	1 cut(s)	840
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstBAI	YACGTR	1 cut(s)	971
BstDEI	CTNAG	5 cut(s)	138, 178, 1154, 1281, 1329
BstEII	GGTNACC	1 cut(s)	1076
BstENI	CCTNNNNNAGG	1 cut(s)	45
BstF5I	GGATG	5 cut(s)	166, 283, 669, 820, 1304
BstFNI	CGCG	1 cut(s)	1104
BstKTI	GATC	5 cut(s)	240, 682, 772, 838, 1099
BstMAI	GTCTC	1 cut(s)	1277
BstMBI	GATC	5 cut(s)	237, 679, 769, 835, 1096
BstMWI	GCNNNNNNNGC	2 cut(s)	740, 1376
BstNI	CCWGG	2 cut(s)	283, 546
BstNSI	RCATGY	1 cut(s)	210
BstPI	GGTNACC	1 cut(s)	1076
BstSCI	CCNGG	2 cut(s)	281, 544
BstSFI	CTRYAG	2 cut(s)	1413, 1461
BstUI	CGCG	1 cut(s)	1104
BstV1I	GCAGC	3 cut(s)	746, 1427, 1447
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	237, 679
BstYI	RGATCY	2 cut(s)	237, 679
BsuRI	GGCC	2 cut(s)	1152, 1318
BtsCI	GGATG	5 cut(s)	166, 283, 669, 820, 1304
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	6 cut(s)	681, 876, 1125, 1230, 1355, 1449
BveI	ACCTGC	2 cut(s)	544, 1454
CaiI	CAGNNNCTG	1 cut(s)	947
Cfr13I	GGNCC	4 cut(s)	55, 440, 1150, 1316
Csp6I	GTAC	4 cut(s)	628, 866, 972, 1392
CviAII	CATG	3 cut(s)	207, 839, 1309
CviQI	GTAC	4 cut(s)	628, 866, 972, 1392
DdeI	CTNAG	5 cut(s)	138, 178, 1154, 1281, 1329
DpnI	GATC	5 cut(s)	239, 681, 771, 837, 1098
DpnII	GATC	5 cut(s)	237, 679, 769, 835, 1096
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
EciI	GGCGGA	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	887
Eco130I	CCWWGG	1 cut(s)	1374
Eco24I	GRGCYC	2 cut(s)	529, 889
Eco47I	GGWCC	2 cut(s)	55, 440
Eco53kI	GAGCTC	1 cut(s)	887
Eco57I	CTGAAG	2 cut(s)	673, 1379
Eco91I	GGTNACC	1 cut(s)	1076
EcoICRI	GAGCTC	1 cut(s)	887
EcoNI	CCTNNNNNAGG	1 cut(s)	45
EcoO65I	GGTNACC	1 cut(s)	1076
EcoRII	CCWGG	2 cut(s)	281, 544
EcoT14I	CCWWGG	1 cut(s)	1374
EcoT38I	GRGCYC	2 cut(s)	529, 889
ErhI	CCWWGG	1 cut(s)	1374
FaeI	CATG	3 cut(s)	210, 842, 1312
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	3 cut(s)	206, 838, 1308
FauNDI	CATATG	1 cut(s)	989
Fnu4HI	GCNGC	4 cut(s)	97, 735, 1416, 1461
FokI	GGATG	5 cut(s)	153, 290, 676, 827, 1291
FriOI	GRGCYC	2 cut(s)	529, 889
Fsp4HI	GCNGC	4 cut(s)	97, 735, 1416, 1461
FspBI	CTAG	3 cut(s)	467, 984, 1086
GluI	GCNGC	4 cut(s)	97, 735, 1416, 1461
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	1152, 1318
HapII	CCGG	1 cut(s)	1094
Hin1II	CATG	3 cut(s)	210, 842, 1312
HindIII	AAGCTT	1 cut(s)	1265
HinfI	GANTC	1 cut(s)	748
HpaII	CCGG	1 cut(s)	1094
HphI	GGTGA	9 cut(s)	38, 43, 278, 469, 854, 1013, 1088, 1091, 1199
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	3 cut(s)	181, 571, 692
Hpy188III	TCNNGA	3 cut(s)	114, 752, 1239
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	6 cut(s)	413, 749, 753, 946, 1222, 1419
HpyCH4III	ACNGT	6 cut(s)	870, 1069, 1234, 1383, 1391, 1396
HpyCH4IV	ACGT	2 cut(s)	604, 970
HpyF10VI	GCNNNNNNNGC	2 cut(s)	740, 1376
HpyF3I	CTNAG	5 cut(s)	138, 178, 1154, 1281, 1329
HpySE526I	ACGT	2 cut(s)	604, 970
Hsp92II	CATG	3 cut(s)	210, 842, 1312
Kzo9I	GATC	5 cut(s)	237, 679, 769, 835, 1096
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	4 cut(s)	134, 251, 892, 944
Lsp1109I	GCAGC	3 cut(s)	746, 1427, 1447
LweI	GCATC	6 cut(s)	3, 263, 268, 1267, 1312, 1313
MaeI	CTAG	3 cut(s)	467, 984, 1086
MaeII	ACGT	2 cut(s)	604, 970
MaeIII	GTNAC	6 cut(s)	457, 594, 1006, 1076, 1429, 1444
MalI	GATC	5 cut(s)	239, 681, 771, 837, 1098
MboI	GATC	5 cut(s)	237, 679, 769, 835, 1096
MboII	GAAGA	8 cut(s)	22, 340, 358, 442, 679, 857, 1172, 1237
MflI	RGATCY	2 cut(s)	237, 679
MhlI	GDGCHC	2 cut(s)	529, 889
MmeI	TCCRAC	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	3 cut(s)	368, 408, 1040
MslI	CAYNNNNRTG	3 cut(s)	1220, 1309, 1360
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	1094
MspR9I	CCNGG	2 cut(s)	283, 546
Mva1269I	GAATGC	2 cut(s)	403, 1128
MvaI	CCWGG	2 cut(s)	283, 546
MvnI	CGCG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	2 cut(s)	740, 1376
NdeI	CATATG	1 cut(s)	989
NdeII	GATC	5 cut(s)	237, 679, 769, 835, 1096
NlaIII	CATG	3 cut(s)	210, 842, 1312
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	4 cut(s)	457, 1076, 1429, 1444
NspI	RCATGY	1 cut(s)	210
OliI	CACNNNNGTG	1 cut(s)	1360
PciI	ACATGT	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 529
PctI	GAATGC	2 cut(s)	403, 1128
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	748
PkrI	GCNGC	4 cut(s)	98, 736, 1417, 1462
Ppu21I	YACGTR	1 cut(s)	971
PscI	ACATGT	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	889
Psp6I	CCWGG	2 cut(s)	281, 544
PspEI	GGTNACC	1 cut(s)	1076
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	2 cut(s)	281, 544
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	4 cut(s)	55, 440, 1150, 1316
PstI	CTGCAG	2 cut(s)	1417, 1465
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	2 cut(s)	237, 679
RsaI	GTAC	4 cut(s)	629, 867, 973, 1393
RsaNI	GTAC	4 cut(s)	628, 866, 972, 1392
RseI	CAYNNNNRTG	3 cut(s)	1220, 1309, 1360
SacI	GAGCTC	1 cut(s)	889
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	368, 408, 1040
SatI	GCNGC	4 cut(s)	97, 735, 1416, 1461
Sau3AI	GATC	5 cut(s)	237, 679, 769, 835, 1096
Sau96I	GGNCC	4 cut(s)	55, 440, 1150, 1316
ScrFI	CCNGG	2 cut(s)	283, 546
SduI	GDGCHC	2 cut(s)	529, 889
SfaNI	GCATC	6 cut(s)	3, 263, 268, 1267, 1312, 1313
SfcI	CTRYAG	2 cut(s)	1413, 1461
SinI	GGWCC	2 cut(s)	55, 440
SmiMI	CAYNNNNRTG	3 cut(s)	1220, 1309, 1360
SsiI	CCGC	6 cut(s)	96, 99, 123, 621, 737, 1102
SspMI	CTAG	3 cut(s)	467, 984, 1086
SstI	GAGCTC	1 cut(s)	889
StyD4I	CCNGG	2 cut(s)	281, 544
StyI	CCWWGG	1 cut(s)	1374
TaaI	ACNGT	6 cut(s)	870, 1069, 1234, 1383, 1391, 1396
TaiI	ACGT	2 cut(s)	607, 973
TaqI	TCGA	6 cut(s)	5, 69, 273, 364, 395, 883
TatI	WGTACW	1 cut(s)	865
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	748
Tru1I	TTAA	3 cut(s)	368, 408, 1040
Tru9I	TTAA	3 cut(s)	368, 408, 1040
TscAI	CASTG	6 cut(s)	681, 883, 1125, 1237, 1362, 1449
TseFI	GTSAC	4 cut(s)	457, 1076, 1429, 1444
TseI	GCWGC	3 cut(s)	734, 1415, 1460
Tsp45I	GTSAC	4 cut(s)	457, 1076, 1429, 1444
TspDTI	ATGAA	5 cut(s)	155, 588, 738, 1238, 1277
TspGWI	ACGGA	3 cut(s)	95, 760, 848
TspRI	CASTG	6 cut(s)	681, 883, 1125, 1237, 1362, 1449
VpaK11BI	GGWCC	2 cut(s)	55, 440
XagI	CCTNNNNNAGG	1 cut(s)	45
XapI	RAATTY	4 cut(s)	127, 787, 907, 1424
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	3 cut(s)	467, 984, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.