Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003760

Physical Location & Seq

Genomic Coordinates Reverse (-)

31879983 .. 31880964

Gene Structure 982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0301900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGGTTGAAAATAAACAAGTTATTGAGCAAATTGCACATATTTGGGTTGTTGCGCAAGATGGGTCGGGAGAATTCACTACGATTATGGATGCCATCAACGCTGCCCCAGATTATAGCCCCACTCGCTCCACGATCAAGATCAAAACTGGAGTATATGACGAGATACTGACTATCGGCAAAGAAAAGTGGAATCTCACTTTTCTCGGTGAGGGAGTCAACAAAACCATAATCACCGGCAACCGAAGTAATATTGGAGAATTTCGCACATCCGAAAGTGCAACACTAGCAATTGAAGGGGACAGATTCTTGGTGCAAGACATCACATTCCAAAATACCGCTGGGCCAGAAGTAAGGCAAGCTGTGGCAGTCCGAAGCAGTTCCGACTACTCTGTATTGTACAGATGTAGAATCATAGGGTTCCAAGACACTCTTTATACACAACTCGGTATTCAGTTCTTCAGAGATTGCAAAATCTATGGTATAGTAGATTTTATTTTTGGTCATGCTAAAGTAGTTCTACATAATTGTTATATATTTGGTAGACAACCACAAGAAGGTCAGCCCATCACAATAACTGCACAAAACCGAGACCCAATAAACATTAGTGCCATAGTTATTGACAACTGCATTATTACTGCAAGCACAGAACTTCGTAACTCAAAGTTCCCAGTAAAAGTGTATCTAGGAAGACCATGGTCAAATTATTCTAGTATAGTCGTTATGCAGAGTTTTCTAGATACTTTCATAGACCCAAAAGGTTGGTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042221 GO:0042579 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

257

Amino Acids

28.89

Weight (kDa)

5.48

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	17 - 256	3.2e-94	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24170 AT3G24170 AT3G24170
fragaria_vesca	FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450
malus_domestica	MD04G1004900.v1.1
prunus_persica	Prupe.1G004800_v2.0.a1 Prupe.1G004800_v2.0.a1
pyrus_communis	pycom04g00490
rosa_chinensis	RchiOBHm_Chr4g0385881
rosa_laevigata	RLG00000010205 RLG00000012039
rosa_multiflora	Rmu_sc0008728.1_g000007
rosa_roxburghii	Rroxscaffold_1G00020680 Rroxscaffold_2G00103170 Rroxscaffold_5G00333480
rosa_rugosa	Rorug03G0301900 Rorug03G0302000 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug06G0225700
rosa_samantha	Rh4AG006900 Rh4BG004500 Rh4DG006500 Rh6BG346300 Rh6DG339100
rosa_wichuraiana	Rw4G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	544
AciI	CCGC	1 cut(s)	339
AcsI	RAATTY	2 cut(s)	74, 260
AcuI	CTGAAG	1 cut(s)	445
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	11, 296
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	585
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	74, 260
Asp700I	GAANNNNTTC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	221, 226
BbsI	GAAGAC	1 cut(s)	697
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	3 cut(s)	56, 104, 575
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	4 cut(s)	287, 686, 711, 737
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	665
BoxI	GACNNNNGTC	1 cut(s)	697
BpiI	GAAGAC	1 cut(s)	697
BpmI	CTGGAG	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	154, 671
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	2 cut(s)	97, 269
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseNI	ACTGG	2 cut(s)	154, 671
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	585
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	346
Bso31I	GGTCTC	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	135, 141
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	585
BsrFI	RCCGGY	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	154, 671
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	2 cut(s)	135, 141
BssT1I	CCWWGG	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	360, 643
BstDSI	CCRYGG	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	97, 269
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	138, 144
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	2 cut(s)	135, 141
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 126, 287
BstPAI	GACNNNNGTC	1 cut(s)	697
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	697
BstXI	CCANNNNNNTGG	1 cut(s)	762
BsuRI	GGCC	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	2 cut(s)	97, 269
Cac8I	GCNNGC	2 cut(s)	360, 643
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	2 cut(s)	506, 696
CviJI	RGCY	4 cut(s)	120, 346, 362, 565
CviKI_1	RGCY	4 cut(s)	120, 346, 362, 565
CviQI	GTAC	1 cut(s)	400
DpnI	GATC	2 cut(s)	137, 143
DpnII	GATC	2 cut(s)	135, 141
Eco130I	CCWWGG	1 cut(s)	695
Eco31I	GGTCTC	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	2 cut(s)	509, 699
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	2 cut(s)	505, 695
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	104, 256
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	4 cut(s)	287, 686, 711, 737
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	509, 699
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	193, 216, 306, 411
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	221, 226
Hpy166II	GTNNAC	2 cut(s)	220, 545
Hpy188I	TCNGA	4 cut(s)	274, 374, 385, 464
Hpy188III	TCNNGA	3 cut(s)	69, 139, 737
Hpy8I	GTNNAC	2 cut(s)	220, 545
HpyAV	CCTTC	2 cut(s)	290, 551
HpyCH4V	TGCA	8 cut(s)	38, 281, 316, 471, 581, 630, 641, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 126, 287
Hsp92II	CATG	2 cut(s)	509, 699
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	135, 141
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	6 cut(s)	123, 135, 250, 327, 360, 684
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	4 cut(s)	287, 686, 711, 737
MaeIII	GTNAC	1 cut(s)	656
MalI	GATC	2 cut(s)	137, 143
MboI	GATC	2 cut(s)	135, 141
MboII	GAAGA	2 cut(s)	451, 702
MfeI	CAATTG	1 cut(s)	291
MluCI	AATT	6 cut(s)	33, 74, 260, 291, 526, 703
MlyI	GAGTC	1 cut(s)	225
MmeI	TCCRAC	2 cut(s)	408, 747
MnlI	CCTC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	379
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	101, 126, 287
NcoI	CCATGG	1 cut(s)	695
NdeII	GATC	2 cut(s)	135, 141
NlaIII	CATG	2 cut(s)	509, 699
NlaIV	GGNNCC	1 cut(s)	422
NsbI	TGCGCA	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	193, 306, 411
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PshAI	GACNNNNGTC	1 cut(s)	697
PspFI	CCCAGC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	135, 141
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	225
SetI	ASST	4 cut(s)	9, 364, 562, 763
SfaNI	GCATC	1 cut(s)	82
Sse9I	AATT	6 cut(s)	33, 74, 260, 291, 526, 703
SsiI	CCGC	1 cut(s)	339
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	4 cut(s)	287, 686, 711, 737
StyI	CCWWGG	1 cut(s)	695
TasI	AATT	6 cut(s)	33, 74, 260, 291, 526, 703
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	3 cut(s)	193, 306, 411
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	736
XapI	RAATTY	2 cut(s)	74, 260
XbaI	TCTAGA	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	4 cut(s)	287, 686, 711, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.