Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003760

Physical Location & Seq

Genomic Coordinates Reverse (-)

57758290 .. 57758628

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG346300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGGGTAGTTGTTGCAAGGAATCTGGAAGGTAGGGGAATTAATTTACACCCAAGAACAAATCTGACAGAGTTGATAAAAACAGATGATGGCATAAAAGTTATCACAGATCGTGGTGAAGAGCTGATAGCGGATGTTGTATTGTTCACCACTGGTCGGGTTCCTAATACAAAGAGGTTGAATTTGGAAGTTGTAGGTGTGGAACTTGATCCAACAGGAGCTGTAAAGGTGGACGAGTATTCACGTACCAACATTCCTAGTATATGGGATGTTGGTGATGTTACAAATCGGGCTAACCTTACCCCTGTTGCTCTAATGGAGGGAACATGCTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042221 GO:0042579 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

112

Amino Acids

12.29

Weight (kDa)

5.1

Isoelectric Point (pI)

7.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	4 - 108	2.3e-23	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24170 AT3G24170 AT3G24170
fragaria_vesca	FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450
malus_domestica	MD04G1004900.v1.1
prunus_persica	Prupe.1G004800_v2.0.a1 Prupe.1G004800_v2.0.a1
pyrus_communis	pycom04g00490
rosa_chinensis	RchiOBHm_Chr4g0385881
rosa_laevigata	RLG00000010205 RLG00000012039
rosa_multiflora	Rmu_sc0008728.1_g000007
rosa_roxburghii	Rroxscaffold_1G00020680 Rroxscaffold_2G00103170 Rroxscaffold_5G00333480
rosa_rugosa	Rorug03G0301900 Rorug03G0302000 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug06G0225700
rosa_samantha	Rh4AG006900 Rh4BG004500 Rh4DG006500 Rh6BG346300 Rh6DG339100
rosa_wichuraiana	Rw4G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	181
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	2 cut(s)	124, 221
AluI	AGCT	2 cut(s)	124, 221
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	181
AseI	ATTAAT	1 cut(s)	42
AsuHPI	GGTGA	3 cut(s)	128, 139, 287
BccI	CCATC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	157
BseGI	GGATG	2 cut(s)	139, 274
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	109, 208
BspACI	CCGC	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	109, 208
Bst6I	CTCTTC	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	139, 274
BstKTI	GATC	2 cut(s)	112, 211
BstMBI	GATC	2 cut(s)	109, 208
BstNSI	RCATGY	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	139, 274
BtsIMutI	CAGTG	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	3 cut(s)	124, 221, 293
CviKI_1	RGCY	3 cut(s)	124, 221, 293
CviQI	GTAC	1 cut(s)	246
DpnI	GATC	2 cut(s)	111, 210
DpnII	GATC	2 cut(s)	109, 208
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
FaeI	CATG	1 cut(s)	330
FaiI	YATR	5 cut(s)	95, 263, 265, 328, 337
FatI	CATG	1 cut(s)	326
FokI	GGATG	2 cut(s)	146, 281
FspBI	CTAG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	330
HinfI	GANTC	1 cut(s)	22
HphI	GGTGA	3 cut(s)	128, 139, 287
Hpy166II	GTNNAC	2 cut(s)	147, 232
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	147, 232
HpyAV	CCTTC	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	17, 335
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	109, 208
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	4 cut(s)	11, 138, 201, 318
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	111, 210
MboI	GATC	2 cut(s)	109, 208
MboII	GAAGA	1 cut(s)	131
MluCI	AATT	3 cut(s)	39, 43, 181
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	168, 313
MseI	TTAA	1 cut(s)	42
NdeII	GATC	2 cut(s)	109, 208
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	109, 208
SetI	ASST	8 cut(s)	34, 126, 179, 199, 223, 231, 247, 300
Sse9I	AATT	3 cut(s)	39, 43, 181
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	247
TasI	AATT	3 cut(s)	39, 43, 181
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	157
TspRI	CASTG	1 cut(s)	157
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	330
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.