MD04G1004900.v1.1

Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
615106 .. 622548
7443 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1004900.v1.1.491

Sequence Viewer

Length: 1491 bp
ATGTCGAGGAAGATGCTAATTGATGGTGAGGTGAACCAACCTAATGAACAAGAGGCCCACTACGACTTCGACTTGTTTGTTATTGGGGCCGGAAGCGGTGGTGTCCGTGCCTCCAGATTTTCAGCTAATTTTGGAGCTAAGGTTGGGATATGCGAGCTTCCATTTCATCCTGTCAGCTCAGAAGTAATTGGAGGAGTGGGTGGAACATGTGTCATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTGTATGGAGCGTCTTTTGGTGGTGAAATTGAGGATGCCAGGAATTATGGCTGGGAAGTGAATGAGAAAGTTGATTTCAACTGGAAGAAACTTTTGCAGAAGAAGACGGATGAAATAGTTCGATTAAATGGAATATACAAGCGCCTATTGTCGAATTCTGGGGTTAAATTCTTTGAAGGAGAGGGCAAGATAGTTGGTCCTAATGATGTCGAGGTGACACAGTTGGATGGCACTAAATTGAGCTATTCTGCGAAACACATATTGATTGCAACTGGCAGCAGGGCTCAACGACCTGCTATTCCTGGTCAGGAATTGGGTATATCATCTGATGAAGCATTGAGTTTGGAGGAGTTACCTAAACGTGCTGTGGTGCTCGGGGGAGGGTACATTGCTGTTGAGTTTGCTTCAATATGGCGTGGGATGGGTGCTTCTGTGGATCTATTCTTCAGAAAGGAACTTCCATTGAGAGGTTTTGATGATGAATTGAGGGCAGTGGTTGCACGGAATCTGGAAGGAAGGGGTATTGATCTACACCCGCAGACAAATTTGACAGAGCTAGTAAAAACAGAGGATGGCATAAAAGTTCGCACAGATCATGGGGAAGAGCTGATAGCAGATGTTGTACTGTTTGCCACTGGTCGGTCTCCCAATACAAAGAGGTTGAATTTGGCAGCTGTAGGCGTGGAAGTTGATAAAACAGGAGCTATAAAGGTGGATGAGTATTCACGTACCAATGTACCTAGCATCTGGGCTGTTGGCGATGTTACAAACCGAGTAAACCTTACCCCTGTGGCTCTAATGGAGGGAACATGCTTCGCAAAAACAGTTTTTGGTGGGGAACCTAGCAAACCAGATTACCGCGATATACCCTGTGCAGTGTTTTGCATACCACCTCTTTCTGTTGTGGGCCTTACTGAAGAGCAGGCAATAGAACAAGCCAAGGGTGATATATTGGTTTTCACATCAACTTTCAACCCAATGAAGAACACTGTATCTGGACGACAAGAAAAGACAATTATGAAGCTTATTGTTGACGCTGAGACGGATAAAGTTATTGGGGCATCCATGTGTGGGCCAGATGCAGCTGAGATTATGCAGGGAATCGCTATTGCATTGAAGTGCGGAGCAACTAAGGCACAATTTGACAGTACGGTGGGAATTCACCCTTCCTCAGCAGAGGAGTTTGTGACAATGCGTTCAGCGACAAGGCGTATTGCTGCAGGTACCAAACCAAAGACAAATCTGTAG

Protein Analysis

497

Amino Acids

53.52

Weight (kDa)

5.88

Isoelectric Point (pI)

27.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 23 - 350 2.2e-68 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 155 - 334 1.8e-13 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 202 - 277 2.1e-18 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim PF02852 370 - 479 1.9e-32 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 544, 1454
Acc65I GGTACC 1 cut(s) 1466
AccB1I GGYRCC 1 cut(s) 1466
AccII CGCG 1 cut(s) 1104
AciI CCGC 4 cut(s) 96, 779, 1102, 1365
AclWI GGATC 1 cut(s) 687
AcsI RAATTY 5 cut(s) 397, 410, 787, 907, 1401
AcuI CTGAAG 2 cut(s) 673, 1179
AfaI GTAC 6 cut(s) 629, 867, 973, 981, 1393, 1468
AfiI CCNNNNNNNGG 3 cut(s) 710, 882, 1314
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 6 cut(s) 322, 419, 651, 907, 1216, 1360
AjnI CCWGG 2 cut(s) 281, 544
Alw21I GWGCWC 1 cut(s) 618
Alw26I GTCTC 2 cut(s) 891, 1277
AlwI GGATC 1 cut(s) 687
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 4 cut(s) 54, 87, 1150, 1316
ApeKI GCWGC 4 cut(s) 519, 914, 1325, 1460
ApoI RAATTY 5 cut(s) 397, 410, 787, 907, 1401
Asp700I GAANNNNTTC 1 cut(s) 360
Asp718I GGTACC 1 cut(s) 1466
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 5 cut(s) 55, 87, 440, 1150, 1316
AsuHPI GGTGA 6 cut(s) 38, 43, 278, 469, 1199, 1397
AvaI CYCGRG 1 cut(s) 617
AvaII GGWCC 1 cut(s) 440
BaeI ACNNNNGTAYC 2 cut(s) 963, 996
BanI GGYRCC 1 cut(s) 1466
BanII GRGCYC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 618
BbvCI CCTCAGC 1 cut(s) 1414
BbvI GCAGC 4 cut(s) 531, 926, 1337, 1447
BccI CCATC 4 cut(s) 17, 464, 658, 809
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 283, 546
BcoDI GTCTC 2 cut(s) 891, 1277
BfaI CTAG 3 cut(s) 800, 984, 1086
BfmI CTRYAG 3 cut(s) 918, 1461, 1487
BfoI RGCGCY 1 cut(s) 388
BfuAI ACCTGC 2 cut(s) 544, 1454
BisI GCNGC 4 cut(s) 520, 915, 1326, 1461
BlsI GCNGC 4 cut(s) 521, 916, 1327, 1462
Bme1390I CCNGG 2 cut(s) 283, 546
Bme18I GGWCC 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 5 cut(s) 55, 87, 440, 1150, 1316
BmiI GGNNCC 3 cut(s) 88, 1083, 1468
BmrFI CCNGG 2 cut(s) 283, 546
BmsI GCATC 5 cut(s) 3, 268, 996, 1312, 1313
BpiI GAAGAC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 97
Bpu10I CCTNAGC 2 cut(s) 138, 1414
BsaAI YACGTR 1 cut(s) 971
BsaI GGTCTC 1 cut(s) 891
BsaJI CCNNGG 1 cut(s) 1182
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 710, 882, 1314
Bse1I ACTGG 3 cut(s) 329, 520, 883
Bse3DI GCAATG 1 cut(s) 630
BseBI CCWGG 2 cut(s) 283, 546
BseDI CCNNGG 1 cut(s) 1182
BseGI GGATG 8 cut(s) 166, 283, 358, 475, 669, 820, 964, 1304
BseLI CCNNNNNNNGG 3 cut(s) 710, 882, 1314
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 4 cut(s) 192, 1272, 1320, 1428
BseNI ACTGG 3 cut(s) 329, 520, 883
BseRI GAGGAG 3 cut(s) 207, 605, 1436
BseXI GCAGC 4 cut(s) 531, 926, 1337, 1447
BseYI CCCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 1 cut(s) 1104
BshFI GGCC 4 cut(s) 56, 89, 1152, 1318
BshNI GGYRCC 1 cut(s) 1466
BsiHKAI GWGCWC 1 cut(s) 618
BsiHKCI CYCGRG 1 cut(s) 617
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 3 cut(s) 710, 882, 1314
BsmAI GTCTC 2 cut(s) 891, 1277
BsmBI CGTCTC 1 cut(s) 1277
BsnI GGCC 4 cut(s) 56, 89, 1152, 1318
Bso31I GGTCTC 1 cut(s) 891
BsoBI CYCGRG 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 529, 618
Bsp143I GATC 3 cut(s) 679, 769, 835
BspACI CCGC 4 cut(s) 96, 779, 1102, 1365
BspANI GGCC 4 cut(s) 56, 89, 1152, 1318
BspCNI CTCAG 4 cut(s) 191, 1273, 1321, 1427
BspFNI CGCG 1 cut(s) 1104
BspLI GGNNCC 3 cut(s) 88, 1083, 1468
BspMAI CTGCAG 1 cut(s) 1465
BspMI ACCTGC 2 cut(s) 544, 1454
BspPI GGATC 1 cut(s) 687
BspQI GCTCTTC 2 cut(s) 840, 1155
BspT107I GGYRCC 1 cut(s) 1466
BspTNI GGTCTC 1 cut(s) 891
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 3 cut(s) 329, 520, 883
BssECI CCNNGG 1 cut(s) 1182
BssMI GATC 3 cut(s) 679, 769, 835
BssT1I CCWWGG 1 cut(s) 1182
Bst2UI CCWGG 2 cut(s) 283, 546
Bst4CI ACNGT 6 cut(s) 465, 870, 1069, 1234, 1391, 1396
Bst6I CTCTTC 2 cut(s) 840, 1155
BstAPI GCANNNNNTGC 1 cut(s) 740
BstBAI YACGTR 1 cut(s) 971
BstC8I GCNNGC 2 cut(s) 155, 1167
BstDEI CTNAG 6 cut(s) 138, 178, 1281, 1329, 1374, 1414
BstF5I GGATG 8 cut(s) 166, 283, 358, 475, 669, 820, 964, 1304
BstFNI CGCG 1 cut(s) 1104
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 3 cut(s) 682, 772, 838
BstMAI GTCTC 2 cut(s) 891, 1277
BstMBI GATC 3 cut(s) 679, 769, 835
BstMWI GCNNNNNNNGC 2 cut(s) 740, 1376
BstNI CCWGG 2 cut(s) 283, 546
BstNSI RCATGY 2 cut(s) 210, 1056
BstSCI CCNGG 2 cut(s) 281, 544
BstSFI CTRYAG 3 cut(s) 918, 1461, 1487
BstUI CGCG 1 cut(s) 1104
BstV1I GCAGC 4 cut(s) 531, 926, 1337, 1447
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 4 cut(s) 56, 89, 1152, 1318
BtgZI GCGATG 1 cut(s) 1017
BtsCI GGATG 8 cut(s) 166, 283, 358, 475, 669, 820, 964, 1304
BtsI GCAGTG 2 cut(s) 741, 1125
BtsIMutI CAGTG 4 cut(s) 741, 876, 1125, 1230
BveI ACCTGC 2 cut(s) 544, 1454
Cac8I GCNNGC 2 cut(s) 155, 1167
CfoI GCGC 1 cut(s) 387
Cfr13I GGNCC 5 cut(s) 55, 87, 440, 1150, 1316
CseI GACGC 2 cut(s) 243, 1286
Csp6I GTAC 6 cut(s) 628, 866, 972, 980, 1392, 1467
CviAII CATG 4 cut(s) 207, 839, 1053, 1309
CviQI GTAC 6 cut(s) 628, 866, 972, 980, 1392, 1467
DdeI CTNAG 6 cut(s) 138, 178, 1281, 1329, 1374, 1414
DpnI GATC 3 cut(s) 681, 771, 837
DpnII GATC 3 cut(s) 679, 769, 835
Eam1104I CTCTTC 2 cut(s) 840, 1155
EarI CTCTTC 2 cut(s) 840, 1155
Eco130I CCWWGG 1 cut(s) 1182
Eco24I GRGCYC 1 cut(s) 529
Eco31I GGTCTC 1 cut(s) 891
Eco47I GGWCC 1 cut(s) 440
Eco57I CTGAAG 2 cut(s) 673, 1179
Eco88I CYCGRG 1 cut(s) 617
EcoRI GAATTC 2 cut(s) 397, 1401
EcoRII CCWGG 2 cut(s) 281, 544
EcoT14I CCWWGG 1 cut(s) 1182
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 1182
Esp3I CGTCTC 1 cut(s) 1277
FaeI CATG 4 cut(s) 210, 842, 1056, 1312
FatI CATG 4 cut(s) 206, 838, 1052, 1308
FauI CCCGC 1 cut(s) 786
Fnu4HI GCNGC 4 cut(s) 520, 915, 1326, 1461
FokI GGATG 8 cut(s) 153, 290, 365, 482, 676, 827, 971, 1291
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 4 cut(s) 520, 915, 1326, 1461
FspBI CTAG 3 cut(s) 800, 984, 1086
GlaI GCGC 1 cut(s) 386
GluI GCNGC 4 cut(s) 520, 915, 1326, 1461
GsaI CCCAGC 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 4 cut(s) 56, 89, 1152, 1318
HapII CCGG 1 cut(s) 90
HgaI GACGC 2 cut(s) 243, 1286
HhaI GCGC 1 cut(s) 387
Hin1II CATG 4 cut(s) 210, 842, 1056, 1312
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HincII GTYRAC 1 cut(s) 1276
HindII GTYRAC 1 cut(s) 1276
HindIII AAGCTT 1 cut(s) 1265
HinfI GANTC 2 cut(s) 748, 1344
HpaII CCGG 1 cut(s) 90
HphI GGTGA 6 cut(s) 38, 43, 278, 469, 1199, 1397
Hpy166II GTNNAC 3 cut(s) 34, 1021, 1276
Hpy188I TCNGA 3 cut(s) 181, 571, 692
Hpy188III TCNNGA 4 cut(s) 114, 551, 752, 1239
Hpy8I GTNNAC 3 cut(s) 34, 1021, 1276
HpyAV CCTTC 4 cut(s) 413, 749, 753, 1419
HpyCH4III ACNGT 6 cut(s) 465, 870, 1069, 1234, 1391, 1396
HpyCH4IV ACGT 2 cut(s) 604, 970
HpyCH4V TGCA 9 cut(s) 340, 512, 743, 1118, 1128, 1325, 1339, 1355, 1463
HpyF10VI GCNNNNNNNGC 2 cut(s) 740, 1376
HpyF3I CTNAG 6 cut(s) 138, 178, 1281, 1329, 1374, 1414
HpySE526I ACGT 2 cut(s) 604, 970
Hsp92II CATG 4 cut(s) 210, 842, 1056, 1312
HspAI GCGC 1 cut(s) 385
KpnI GGTACC 1 cut(s) 1470
Kzo9I GATC 3 cut(s) 679, 769, 835
LguI GCTCTTC 2 cut(s) 840, 1155
LmnI GCTCC 4 cut(s) 134, 251, 944, 1367
Lsp1109I GCAGC 4 cut(s) 531, 926, 1337, 1447
LweI GCATC 5 cut(s) 3, 268, 996, 1312, 1313
MaeI CTAG 3 cut(s) 800, 984, 1086
MaeII ACGT 2 cut(s) 604, 970
MaeIII GTNAC 4 cut(s) 457, 594, 1006, 1429
MalI GATC 3 cut(s) 681, 771, 837
MboI GATC 3 cut(s) 679, 769, 835
MboII GAAGA 8 cut(s) 22, 340, 355, 358, 679, 857, 1172, 1237
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 2 cut(s) 529, 618
MmeI TCCRAC 1 cut(s) 447
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 2 cut(s) 368, 408
MslI CAYNNNNRTG 2 cut(s) 1309, 1360
MspA1I CMGCKG 2 cut(s) 917, 1328
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 2 cut(s) 283, 546
MvaI CCWGG 2 cut(s) 283, 546
MvnI CGCG 1 cut(s) 1104
MwoI GCNNNNNNNGC 2 cut(s) 740, 1376
NdeII GATC 3 cut(s) 679, 769, 835
NlaIII CATG 4 cut(s) 210, 842, 1056, 1312
NlaIV GGNNCC 3 cut(s) 88, 1083, 1468
NmuCI GTSAC 2 cut(s) 457, 1429
NspI RCATGY 2 cut(s) 210, 1056
PciI ACATGT 1 cut(s) 206
PciSI GCTCTTC 2 cut(s) 840, 1155
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 748, 1344
PkrI GCNGC 4 cut(s) 521, 916, 1327, 1462
Ppu21I YACGTR 1 cut(s) 971
PscI ACATGT 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 281, 544
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 2 cut(s) 281, 544
PspN4I GGNNCC 3 cut(s) 88, 1083, 1468
PspPI GGNCC 5 cut(s) 55, 87, 440, 1150, 1316
PstI CTGCAG 1 cut(s) 1465
PsuI RGATCY 1 cut(s) 679
PvuII CAGCTG 2 cut(s) 917, 1328
RsaI GTAC 6 cut(s) 629, 867, 973, 981, 1393, 1468
RsaNI GTAC 6 cut(s) 628, 866, 972, 980, 1392, 1467
RseI CAYNNNNRTG 2 cut(s) 1309, 1360
SapI GCTCTTC 2 cut(s) 840, 1155
SaqAI TTAA 2 cut(s) 368, 408
SatI GCNGC 4 cut(s) 520, 915, 1326, 1461
Sau3AI GATC 3 cut(s) 679, 769, 835
Sau96I GGNCC 5 cut(s) 55, 87, 440, 1150, 1316
ScrFI CCNGG 2 cut(s) 283, 546
SduI GDGCHC 2 cut(s) 529, 618
SfaNI GCATC 5 cut(s) 3, 268, 996, 1312, 1313
SfcI CTRYAG 3 cut(s) 918, 1461, 1487
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 2 cut(s) 1309, 1360
SsiI CCGC 4 cut(s) 96, 779, 1102, 1365
SspMI CTAG 3 cut(s) 800, 984, 1086
StyD4I CCNGG 2 cut(s) 281, 544
StyI CCWWGG 1 cut(s) 1182
TaaI ACNGT 6 cut(s) 465, 870, 1069, 1234, 1391, 1396
TaiI ACGT 2 cut(s) 607, 973
TaqI TCGA 5 cut(s) 5, 69, 364, 395, 453
TaqII GACCGA 1 cut(s) 873
TatI WGTACW 1 cut(s) 865
TfiI GAWTC 2 cut(s) 748, 1344
Tru1I TTAA 2 cut(s) 368, 408
Tru9I TTAA 2 cut(s) 368, 408
TscAI CASTG 4 cut(s) 741, 883, 1125, 1237
TseFI GTSAC 2 cut(s) 457, 1429
TseI GCWGC 4 cut(s) 519, 914, 1325, 1460
Tsp45I GTSAC 2 cut(s) 457, 1429
TspDTI ATGAA 7 cut(s) 60, 155, 369, 588, 738, 1238, 1277
TspGWI ACGGA 4 cut(s) 95, 365, 760, 1301
TspRI CASTG 4 cut(s) 741, 883, 1125, 1237
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 5 cut(s) 397, 410, 787, 907, 1401
XceI RCATGY 2 cut(s) 210, 1056
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 3 cut(s) 800, 984, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.