FvH4_4g00450

Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
427898 .. 437210
9313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00450.t1

Sequence Viewer

Length: 1491 bp
ATGGCCAGGAAGATGCTAATTGATGGTGAGCTGAGCAAACCAAATGAAGAGGAGGCCCACTATGACTTCGACTTGTTTGTTATTGGGGCTGGAAGTGGTGGTGTTCGTGCCGCCAGATTCTCGGCTAATATGGGAGCTAAGGTTGCCATATGTGAGCTTCCATTTCATCCTATCAGTTCTGAAGTGATTGGAGGAGTTGGTGGAACATGTGTCATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTGTATGGAGCATCTTTTGGCAGTGAAATTCAGGATGCTAAGAATTATGGCTGGGAAGTGAATGACAAAGTTGATTTCAACTGGAAGAAGCTTTTGCAGAAAAAGACAGATGAAATAGTTCGATTAAATGGCATATACAAGCGTTTATTGTCGAACGCTGGGGTTAAATTATTTGAAGGAGAGGGTAAGCTAGTTGGTCCCAATGAAGTTGAGGTGACACAGTTGGATGGCACTAAATTGAGCTATTCAGCAAAGCACATATTGATTGCAACTGGCGGTAGGGCTCAGCGACCTGGTATTCCTGGTGAGGAACTGGGTATAACATCGGATGAAGCATTGAGTTTGGAGGAGTTGCCTAAACGCGCTGTAGTGCTTGGGGGAGGATACATTGCGGTCGAGTTTGCCTCAATTTGGCGTGGGATGGGCGCTTCTGTGGATCTTTTCTTCAGAAGGGAACTTCCATTGAGAGGTTTTGATGATGAAATGAGGGCAGTTGCTGCAAGGAATCTTGAAGCTAGGGGAATTGATTTACACCCAAGAACAAATTTGACAGAGTTGATTAAAACGGAGGATGGCATAAAAGTTATCACAGATCATGGTGAAGAGCTGATAGCGGATGTTGTACTGTTCGCCACTGGTCGGGTTCCCAATTCAAAGAGGTTGAACTTGGAAGCTGTGGGTGTGGAACTTGATCCAAAAGGAGCTGTGAAGGTGGATGAGTATTCCCGTACCAACATTCCTAGTATATGGGCTGTTGGTGATGTTACAAACCGGGTTAACCTTACACCTGTTGCTCTAATGGAGGGAACATGTTTTGCAAAAACAGTTTTTGGTGGGGAACCTAGCAAACCGGATTACAGAGATATACCTTGTGCAGTTTTTTGCATACCACCTCTATCCGTGGTGGGGCTTAGTGAAGAACAGGCAGTGGAGCAAGCCAATGGGGATCTATTAGTTTTCACATCAAGCTTCAATCCAATGAAGAACACTGTATCCGGACGGCAAGAGAAGTCGGTTATGAAGCTTGTTGTTGATGCTGAGACGGATAAAGTTCTAGGAGCGTCAATGTGCGGGCCAGATTCTCCTGAGATCATGCAGGGGATTGCTATTGCACTGAAATGTGGAGCAACTAAAGCGCAATTTGACAGTACAGTCGGAATACACCCTTCTGCAGCGGAGGAATTTGTGACCATGCGTTCAGTGACTAGGCGTGTTTCTGCAAGTGGCAAACCAAAAACAACTCTATAA

Protein Analysis

497

Amino Acids

53.44

Weight (kDa)

5.65

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 23 - 350 8.8e-71 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 155 - 334 2.7e-11 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 202 - 276 4.1e-18 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim PF02852 370 - 479 3.6e-30 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1394
AccII CGCG 1 cut(s) 606
AccIII TCCGGA 1 cut(s) 1238
AciI CCGC 6 cut(s) 111, 519, 635, 857, 1314, 1418
AclWI GGATC 3 cut(s) 687, 929, 1197
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 270, 787, 1424
AcuI CTGAAG 2 cut(s) 201, 673
AfaI GTAC 3 cut(s) 867, 973, 1393
AfiI CCNNNNNNNGG 4 cut(s) 654, 710, 882, 1149
AflIII ACRYGT 2 cut(s) 206, 1052
AgsI TTSAA 6 cut(s) 322, 419, 755, 897, 907, 1216
AjnI CCWGG 3 cut(s) 5, 535, 544
AloI GAACNNNNNNTCC 2 cut(s) 1220, 1252
Alw26I GTCTC 1 cut(s) 1277
AlwI GGATC 3 cut(s) 687, 929, 1197
AlwNI CAGNNNCTG 1 cut(s) 740
Aor13HI TCCGGA 1 cut(s) 1238
AoxI GGCC 3 cut(s) 3, 54, 1316
ApeKI GCWGC 2 cut(s) 740, 1415
ApoI RAATTY 3 cut(s) 270, 787, 1424
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 3 cut(s) 608, 671, 1381
AspS9I GGNCC 3 cut(s) 55, 440, 1316
AsuC2I CCSGG 1 cut(s) 1016
AsuHPI GGTGA 5 cut(s) 38, 469, 560, 854, 1013
AvaII GGWCC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 529
BbvI GCAGC 2 cut(s) 727, 1427
BccI CCATC 4 cut(s) 17, 464, 658, 809
BceAI ACGGC 1 cut(s) 1259
BciT130I CCWGG 3 cut(s) 7, 537, 546
BciVI GTATCC 2 cut(s) 620, 1246
BcnI CCSGG 1 cut(s) 1016
BcoDI GTCTC 1 cut(s) 1277
BfaI CTAG 6 cut(s) 434, 759, 984, 1086, 1298, 1449
BfmI CTRYAG 2 cut(s) 609, 1413
BfoI RGCGCY 1 cut(s) 672
BfuI GTATCC 2 cut(s) 620, 1246
BisI GCNGC 3 cut(s) 111, 741, 1416
BlpI GCTNAGC 2 cut(s) 32, 528
BlsI GCNGC 3 cut(s) 112, 742, 1417
Bme1390I CCNGG 4 cut(s) 7, 537, 546, 1016
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 3 cut(s) 55, 440, 1316
BmiI GGNNCC 3 cut(s) 442, 888, 1083
BmrFI CCNGG 4 cut(s) 7, 537, 546, 1016
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 4 cut(s) 3, 263, 268, 1267
BmuI ACTGGG 1 cut(s) 566
BplI GAGNNNNNCTC 2 cut(s) 632, 664
Bpu10I CCTNAGC 1 cut(s) 138
Bpu1102I GCTNAGC 2 cut(s) 32, 528
BpuMI CCSGG 1 cut(s) 1016
BsaJI CCNNGG 1 cut(s) 1143
BsaWI WCCGGW 2 cut(s) 1093, 1238
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 4 cut(s) 654, 710, 882, 1149
Bse1I ACTGG 4 cut(s) 329, 520, 561, 883
Bse3DI GCAATG 1 cut(s) 630
BseAI TCCGGA 1 cut(s) 1238
BseBI CCWGG 3 cut(s) 7, 537, 546
BseDI CCNNGG 1 cut(s) 1143
BseGI GGATG 8 cut(s) 166, 283, 475, 577, 669, 820, 865, 964
BseLI CCNNNNNNNGG 4 cut(s) 654, 710, 882, 1149
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 4 cut(s) 23, 542, 1272, 1320
BseNI ACTGG 4 cut(s) 329, 520, 561, 883
BseRI GAGGAG 3 cut(s) 65, 207, 605
BseXI GCAGC 2 cut(s) 727, 1427
BseYI CCCAGC 2 cut(s) 294, 401
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 1 cut(s) 606
Bsh1285I CGRYCG 1 cut(s) 639
BshFI GGCC 3 cut(s) 5, 56, 1318
BsiEI CGRYCG 1 cut(s) 639
BsiSI CCGG 3 cut(s) 1015, 1094, 1239
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 4 cut(s) 654, 710, 882, 1149
BsmAI GTCTC 1 cut(s) 1277
BsmBI CGTCTC 1 cut(s) 1277
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 3 cut(s) 5, 56, 1318
Bsp1286I GDGCHC 1 cut(s) 529
Bsp13I TCCGGA 1 cut(s) 1238
Bsp143I GATC 5 cut(s) 679, 835, 934, 1189, 1332
Bsp1720I GCTNAGC 2 cut(s) 32, 528
BspACI CCGC 6 cut(s) 111, 519, 635, 857, 1314, 1418
BspANI GGCC 3 cut(s) 5, 56, 1318
BspCNI CTCAG 4 cut(s) 24, 541, 1273, 1321
BspEI TCCGGA 1 cut(s) 1238
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 3 cut(s) 442, 888, 1083
BspMAI CTGCAG 1 cut(s) 1417
BspPI GGATC 3 cut(s) 687, 929, 1197
BspQI GCTCTTC 1 cut(s) 840
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 4 cut(s) 329, 520, 561, 883
BssECI CCNNGG 1 cut(s) 1143
BssMI GATC 5 cut(s) 679, 835, 934, 1189, 1332
Bst2UI CCWGG 3 cut(s) 7, 537, 546
Bst4CI ACNGT 6 cut(s) 465, 870, 1069, 1234, 1391, 1396
Bst6I CTCTTC 2 cut(s) 42, 840
BstAPI GCANNNNNTGC 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 1179, 1316
BstDEI CTNAG 7 cut(s) 32, 138, 282, 528, 1154, 1281, 1329
BstDSI CCRYGG 1 cut(s) 1143
BstF5I GGATG 8 cut(s) 166, 283, 475, 577, 669, 820, 865, 964
BstFNI CGCG 1 cut(s) 606
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 3 cut(s) 608, 671, 1381
BstKTI GATC 5 cut(s) 682, 838, 937, 1192, 1335
BstMAI GTCTC 1 cut(s) 1277
BstMBI GATC 5 cut(s) 679, 835, 934, 1189, 1332
BstMCI CGRYCG 1 cut(s) 639
BstMWI GCNNNNNNNGC 3 cut(s) 143, 740, 1376
BstNI CCWGG 3 cut(s) 7, 537, 546
BstNSI RCATGY 2 cut(s) 210, 1056
BstSCI CCNGG 4 cut(s) 5, 535, 544, 1014
BstSFI CTRYAG 2 cut(s) 609, 1413
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 2 cut(s) 727, 1427
BstX2I RGATCY 2 cut(s) 679, 1189
BstYI RGATCY 2 cut(s) 679, 1189
BsuI GTATCC 2 cut(s) 620, 1246
BsuRI GGCC 3 cut(s) 5, 56, 1318
BtgI CCRYGG 1 cut(s) 1143
BtsCI GGATG 8 cut(s) 166, 283, 475, 577, 669, 820, 865, 964
BtsI GCAGTG 2 cut(s) 271, 1176
BtsIMutI CAGTG 6 cut(s) 271, 876, 1176, 1230, 1355, 1449
Cac8I GCNNGC 2 cut(s) 1179, 1316
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 3 cut(s) 608, 671, 1381
Cfr13I GGNCC 3 cut(s) 55, 440, 1316
CseI GACGC 1 cut(s) 1293
CsiI ACCWGGT 1 cut(s) 535
Csp6I GTAC 3 cut(s) 866, 972, 1392
CviAII CATG 5 cut(s) 207, 839, 1053, 1336, 1435
CviQI GTAC 3 cut(s) 866, 972, 1392
DdeI CTNAG 7 cut(s) 32, 138, 282, 528, 1154, 1281, 1329
DpnI GATC 5 cut(s) 681, 837, 936, 1191, 1334
DpnII GATC 5 cut(s) 679, 835, 934, 1189, 1332
DrdI GACNNNNNNGTC 1 cut(s) 1394
DseDI GACNNNNNNGTC 1 cut(s) 1394
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 42, 840
EarI CTCTTC 2 cut(s) 42, 840
Eco24I GRGCYC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 440
Eco57I CTGAAG 2 cut(s) 201, 673
EcoRII CCWGG 3 cut(s) 5, 535, 544
EcoT38I GRGCYC 1 cut(s) 529
Esp3I CGTCTC 1 cut(s) 1277
FaeI CATG 5 cut(s) 210, 842, 1056, 1339, 1438
FaqI GGGAC 1 cut(s) 426
FatI CATG 5 cut(s) 206, 838, 1052, 1335, 1434
FauI CCCGC 1 cut(s) 1307
FauNDI CATATG 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 111, 741, 1416
FokI GGATG 8 cut(s) 153, 290, 482, 584, 676, 827, 872, 971
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 3 cut(s) 111, 741, 1416
FspBI CTAG 6 cut(s) 434, 759, 984, 1086, 1298, 1449
GlaI GCGC 3 cut(s) 607, 670, 1380
GluI GCNGC 3 cut(s) 111, 741, 1416
GsaI CCCAGC 2 cut(s) 298, 405
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 3 cut(s) 5, 56, 1318
HapII CCGG 3 cut(s) 1015, 1094, 1239
HgaI GACGC 1 cut(s) 1293
HhaI GCGC 3 cut(s) 608, 671, 1381
Hin1II CATG 5 cut(s) 210, 842, 1056, 1339, 1438
Hin6I GCGC 3 cut(s) 606, 669, 1379
HinP1I GCGC 3 cut(s) 606, 669, 1379
HincII GTYRAC 1 cut(s) 1021
HindII GTYRAC 1 cut(s) 1021
HindIII AAGCTT 3 cut(s) 332, 1210, 1265
HinfI GANTC 3 cut(s) 117, 748, 1322
HpaI GTTAAC 1 cut(s) 1021
HpaII CCGG 3 cut(s) 1015, 1094, 1239
HphI GGTGA 5 cut(s) 38, 469, 560, 854, 1013
Hpy166II GTNNAC 1 cut(s) 1021
Hpy188I TCNGA 4 cut(s) 181, 571, 692, 1400
Hpy188III TCNNGA 4 cut(s) 275, 752, 1239, 1328
Hpy8I GTNNAC 1 cut(s) 1021
HpyAV CCTTC 4 cut(s) 413, 687, 946, 1419
HpyCH4III ACNGT 6 cut(s) 465, 870, 1069, 1234, 1391, 1396
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 740, 1376
HpyF3I CTNAG 7 cut(s) 32, 138, 282, 528, 1154, 1281, 1329
Hsp92II CATG 5 cut(s) 210, 842, 1056, 1339, 1438
HspAI GCGC 3 cut(s) 606, 669, 1379
Kpn2I TCCGGA 1 cut(s) 1238
KspAI GTTAAC 1 cut(s) 1021
Kzo9I GATC 5 cut(s) 679, 835, 934, 1189, 1332
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 6 cut(s) 134, 251, 944, 1174, 1301, 1367
Lsp1109I GCAGC 2 cut(s) 727, 1427
LweI GCATC 4 cut(s) 3, 263, 268, 1267
MabI ACCWGGT 1 cut(s) 535
MaeI CTAG 6 cut(s) 434, 759, 984, 1086, 1298, 1449
MaeIII GTNAC 4 cut(s) 457, 1006, 1429, 1444
MalI GATC 5 cut(s) 681, 837, 936, 1191, 1334
MboI GATC 5 cut(s) 679, 835, 934, 1189, 1332
MboII GAAGA 7 cut(s) 22, 59, 340, 679, 857, 1172, 1237
MflI RGATCY 2 cut(s) 679, 1189
MhlI GDGCHC 1 cut(s) 529
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 447, 1378
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 1238
MroXI GAANNNNTTC 1 cut(s) 360
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 368, 408, 804, 1020
MslI CAYNNNNRTG 1 cut(s) 1360
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1418
MspI CCGG 3 cut(s) 1015, 1094, 1239
MspR9I CCNGG 4 cut(s) 7, 537, 546, 1016
MvaI CCWGG 3 cut(s) 7, 537, 546
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 3 cut(s) 143, 740, 1376
NciI CCSGG 1 cut(s) 1016
NdeI CATATG 1 cut(s) 149
NdeII GATC 5 cut(s) 679, 835, 934, 1189, 1332
NlaIII CATG 5 cut(s) 210, 842, 1056, 1339, 1438
NlaIV GGNNCC 3 cut(s) 442, 888, 1083
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 3 cut(s) 457, 1429, 1444
NspI RCATGY 2 cut(s) 210, 1056
PciI ACATGT 2 cut(s) 206, 1052
PciSI GCTCTTC 1 cut(s) 840
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 3 cut(s) 117, 748, 1322
PkrI GCNGC 3 cut(s) 112, 742, 1417
PscI ACATGT 2 cut(s) 206, 1052
Psp6I CCWGG 3 cut(s) 5, 535, 544
PspFI CCCAGC 2 cut(s) 294, 401
PspGI CCWGG 3 cut(s) 5, 535, 544
PspN4I GGNNCC 3 cut(s) 442, 888, 1083
PspPI GGNCC 3 cut(s) 55, 440, 1316
PstI CTGCAG 1 cut(s) 1417
PstNI CAGNNNCTG 1 cut(s) 740
PsuI RGATCY 2 cut(s) 679, 1189
RsaI GTAC 3 cut(s) 867, 973, 1393
RsaNI GTAC 3 cut(s) 866, 972, 1392
RseI CAYNNNNRTG 1 cut(s) 1360
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 4 cut(s) 368, 408, 804, 1020
SatI GCNGC 3 cut(s) 111, 741, 1416
Sau3AI GATC 5 cut(s) 679, 835, 934, 1189, 1332
Sau96I GGNCC 3 cut(s) 55, 440, 1316
ScrFI CCNGG 4 cut(s) 7, 537, 546, 1016
SduI GDGCHC 1 cut(s) 529
SexAI ACCWGGT 1 cut(s) 535
SfaNI GCATC 4 cut(s) 3, 263, 268, 1267
SfcI CTRYAG 2 cut(s) 609, 1413
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 1360
SsiI CCGC 6 cut(s) 111, 519, 635, 857, 1314, 1418
SspMI CTAG 6 cut(s) 434, 759, 984, 1086, 1298, 1449
StyD4I CCNGG 4 cut(s) 5, 535, 544, 1014
TaaI ACNGT 6 cut(s) 465, 870, 1069, 1234, 1391, 1396
TaqI TCGA 4 cut(s) 69, 364, 395, 639
TatI WGTACW 2 cut(s) 865, 1391
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 117, 748, 1322
Tru1I TTAA 4 cut(s) 368, 408, 804, 1020
Tru9I TTAA 4 cut(s) 368, 408, 804, 1020
TscAI CASTG 6 cut(s) 271, 883, 1176, 1237, 1362, 1449
TseFI GTSAC 3 cut(s) 457, 1429, 1444
TseI GCWGC 2 cut(s) 740, 1415
Tsp45I GTSAC 3 cut(s) 457, 1429, 1444
TspDTI ATGAA 8 cut(s) 60, 155, 369, 462, 588, 738, 1238, 1277
TspGWI ACGGA 3 cut(s) 824, 1132, 1301
TspRI CASTG 6 cut(s) 271, 883, 1176, 1237, 1362, 1449
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 3 cut(s) 270, 787, 1424
XceI RCATGY 2 cut(s) 210, 1056
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 6 cut(s) 434, 759, 984, 1086, 1298, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.