Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003760

Physical Location & Seq

Genomic Coordinates Reverse (-)

31888942 .. 31889704

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTGGAGAAGATAGGGATGGATATAATGGTAAGGATGGCAAACAGGAAAGTGGCAGCTCAAAGATGGAGTGACATGGTTGGTCCAAGGATTAGGAAGATATTAGAGAAGGTGGCAGAAATGACCAGCTGTTATAGAGCTTATCACTCTGGTGAATTTGAGTTCCAAATAATTGGAGGGGGAGATAATGGCAGCAAGCATGTAGTGGATCTAAGGCTTCACATTTGCACATTTAAGAGGTGGCAGCTTAGTGGAATACCTTGCGTCCATGCCATTTGTGCCATCAGAAGCAAAAAGGCAGAGCCTGCTGTTTTTTGTGATGATTACTTGATGCCAAGTACTTATATGGAATCCTATAATCCCATTATTCATCCTATTGCTGGTGAGGATGATTGGGACCAAGTGGACTACCCTATAGCACCTCCCCCATATAAGAAGCAAGCAGCTGGCAGACCAAAAATGAAGAGAATCAAGGAGTCGGATGAGAAGAAGCAGCCTGTACCTGCCCCAATTGATAAATCAAAGATGCCAAGAACATACACCAAGATGACATGCCAAGTCTGCTTCAAAAAAGGCCATAACATGTTGAGTTGCACAATCACAAAGGCCAAAAAAGTAGCAGCTGCACAACAAGGAGGGGAAGGGAGTTCCAATGCACCCCAGCAAACTAAGAAGCATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042221 GO:0042579 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

227

Amino Acids

25.57

Weight (kDa)

9.44

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24170 AT3G24170 AT3G24170
fragaria_vesca	FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450
malus_domestica	MD04G1004900.v1.1
prunus_persica	Prupe.1G004800_v2.0.a1 Prupe.1G004800_v2.0.a1
pyrus_communis	pycom04g00490
rosa_chinensis	RchiOBHm_Chr4g0385881
rosa_laevigata	RLG00000010205 RLG00000012039
rosa_multiflora	Rmu_sc0008728.1_g000007
rosa_roxburghii	Rroxscaffold_1G00020680 Rroxscaffold_2G00103170 Rroxscaffold_5G00333480
rosa_rugosa	Rorug03G0301900 Rorug03G0302000 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug06G0225700
rosa_samantha	Rh4AG006900 Rh4BG004500 Rh4DG006500 Rh6BG346300 Rh6DG339100
rosa_wichuraiana	Rw4G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	511
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	155
AfaI	GTAC	2 cut(s)	340, 501
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	1 cut(s)	568
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	6 cut(s)	59, 129, 140, 247, 446, 623
AluI	AGCT	6 cut(s)	59, 129, 140, 247, 446, 623
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	574, 606
ApeKI	GCWGC	7 cut(s)	56, 192, 244, 443, 493, 620, 623
ApoI	RAATTY	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	83, 397
AsuHPI	GGTGA	2 cut(s)	164, 395
AvaII	GGWCC	2 cut(s)	83, 397
BbvI	GCAGC	7 cut(s)	68, 204, 256, 455, 505, 610, 632
BccI	CCATC	4 cut(s)	13, 31, 60, 290
BfmI	CTRYAG	1 cut(s)	414
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	7 cut(s)	57, 193, 245, 444, 494, 621, 624
BlsI	GCNGC	7 cut(s)	58, 194, 246, 445, 495, 622, 625
BmcAI	AGTACT	1 cut(s)	340
Bme18I	GGWCC	2 cut(s)	83, 397
BmgT120I	GGNCC	2 cut(s)	83, 397
BmiI	GGNNCC	1 cut(s)	398
BmsI	GCATC	2 cut(s)	321, 516
BsaJI	CCNNGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	5 cut(s)	24, 42, 370, 394, 487
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseXI	GCAGC	7 cut(s)	68, 204, 256, 455, 505, 610, 632
BseYI	CCCAGC	1 cut(s)	660
BsgI	GTGCAG	1 cut(s)	609
BshFI	GGCC	2 cut(s)	576, 608
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	576, 608
Bsp143I	GATC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	576, 608
BspLI	GGNNCC	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	4 cut(s)	197, 306, 441, 448
BstDEI	CTNAG	3 cut(s)	212, 248, 669
BstF5I	GGATG	5 cut(s)	24, 42, 370, 394, 487
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 305, 561
BstNSI	RCATGY	3 cut(s)	203, 555, 586
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	7 cut(s)	68, 204, 256, 455, 505, 610, 632
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	576, 608
BtsCI	GGATG	5 cut(s)	24, 42, 370, 394, 487
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	4 cut(s)	197, 306, 441, 448
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	83, 397
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	339, 500
CviAII	CATG	5 cut(s)	76, 200, 269, 552, 583
CviQI	GTAC	2 cut(s)	339, 500
DdeI	CTNAG	3 cut(s)	212, 248, 669
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	83, 397
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	5 cut(s)	79, 203, 272, 555, 586
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	5 cut(s)	75, 199, 268, 551, 582
Fnu4HI	GCNGC	7 cut(s)	57, 193, 245, 444, 494, 621, 624
FokI	GGATG	5 cut(s)	31, 49, 357, 401, 494
Fsp4HI	GCNGC	7 cut(s)	57, 193, 245, 444, 494, 621, 624
GluI	GCNGC	7 cut(s)	57, 193, 245, 444, 494, 621, 624
GsaI	CCCAGC	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	576, 608
HgaI	GACGC	1 cut(s)	253
Hin1II	CATG	5 cut(s)	79, 203, 272, 555, 586
HinfI	GANTC	3 cut(s)	350, 468, 476
HphI	GGTGA	2 cut(s)	164, 395
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	287, 481
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	103, 635
HpyCH4V	TGCA	4 cut(s)	228, 594, 626, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 305, 561
HpyF3I	CTNAG	3 cut(s)	212, 248, 669
Hsp92II	CATG	5 cut(s)	79, 203, 272, 555, 586
Kzo9I	GATC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	31, 135, 139, 318, 366, 432, 510, 516, 674
Lsp1109I	GCAGC	7 cut(s)	68, 204, 256, 455, 505, 610, 632
LweI	GCATC	2 cut(s)	321, 516
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	4 cut(s)	22, 109, 475, 499
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	3 cut(s)	155, 171, 510
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	5 cut(s)	170, 231, 379, 432, 629
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	2 cut(s)	150, 545
MspA1I	CMGCKG	3 cut(s)	129, 446, 623
MunI	CAATTG	1 cut(s)	510
MwoI	GCNNNNNNNGC	3 cut(s)	278, 305, 561
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	5 cut(s)	79, 203, 272, 555, 586
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	3 cut(s)	203, 555, 586
OliI	CACNNNNGTG	1 cut(s)	150
PciI	ACATGT	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	350, 468
PkrI	GCNGC	7 cut(s)	58, 194, 246, 445, 495, 622, 625
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	2 cut(s)	83, 397
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	3 cut(s)	129, 446, 623
RsaI	GTAC	2 cut(s)	340, 501
RsaNI	GTAC	2 cut(s)	339, 500
RseI	CAYNNNNRTG	2 cut(s)	150, 545
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	7 cut(s)	57, 193, 245, 444, 494, 621, 624
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	83, 397
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	1 cut(s)	485
SfaNI	GCATC	2 cut(s)	321, 516
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	2 cut(s)	83, 397
SmiMI	CAYNNNNRTG	2 cut(s)	150, 545
Sse9I	AATT	3 cut(s)	155, 171, 510
StyI	CCWWGG	1 cut(s)	86
TasI	AATT	3 cut(s)	155, 171, 510
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	350, 468
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	7 cut(s)	56, 192, 244, 443, 493, 620, 623
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	359, 476
VpaK11BI	GGWCC	2 cut(s)	83, 397
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	3 cut(s)	203, 555, 586
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.